| Detailed Information for Phage Shagrat |
| Discovery Information |
| Isolation Host | Rhodococcus equi NRRL B-16538 |
| Duplicates of this Phage | Skitt |
| Found By | Anna Howland |
| Year Found | 2022 |
| Location Found | Grand Rapids, MI United States of America |
| Finding Institution | Calvin University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 30°C |
| GPS Coordinates | 42.56 N, 85.34 W Map |
| Discovery Notes | Plaques take about 4 days to appear instead of the normal 2. |
| Naming Notes | The name is the name of an orc from Lord of the Rings. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Mar 14, 2023 |
| Sequencing Facility | NC State Genomic Sciences Laboratory |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 3419 |
| Genome length (bp) | 62204 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 5 bases |
| Overhang Sequence | CCACT |
| GC Content | 63.9% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | CF |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
|
| Annotating Institution | Calvin University |
| Annotation Status | In GenBank |
| Plaque Notes | The plaques are cloudy and varied in size. |
| Morphotype | Siphoviridae |
| Number of Genes | 114 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Minimal DNA Master File | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | OQ938576 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
162 |
| Pitt Freezer Box Grid# |
F8 |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
