| Detailed Information for Phage Shawty | |
| Discovery Information | |
| Isolation Host | Streptomyces platensis MJ1A1 |
| Found By | Sharon Tran |
| Year Found | 2015 |
| Location Found | La Jolla, CA USA |
| Finding Institution | University of California, San Diego |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 32.879232, -117.237747 Map |
| Naming Notes | Very short tail (relative to other phages studied in the Fall 2015 group) |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Feb 16, 2016 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 2197 |
| Genome length (bp) | 40733 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CCCGGCCCCA |
| GC Content | 63.2% |
| Sequencing Notes | at position 11731 bp approximately 29% of reads have a G rather than consensus A, at position 11926 bp approximately 31% of reads have an A rather than consensus C, at position 12235 bp approximately 24% of reads have a G rather than consensus A |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | BB |
| Subcluster | BB1 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members | |
| Annotating Institution | University of California, San Diego |
| Annotation Status | In GenBank |
| Plaque Notes | Plaques are about 5.0 to 5.2 mm in diameter Appear as bulls-eye plaques |
| Morphotype | Siphoviridae |
| Number of Genes | 56 |
| Number of tRNAs | 2 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewShawty_1 Shawty_2 Shawty_3 Shawty_4 Shawty_5 Shawty_6 Shawty_7 Shawty_8 Shawty_9 Shawty_10 Shawty_11 Shawty_12 Shawty_13 Shawty_14 Shawty_15 Shawty_16 Shawty_17 Shawty_18 Shawty_19 Shawty_20 Shawty_21 Shawty_22 Shawty_23 Shawty_24 Shawty_25 Shawty_26 Shawty_27 Shawty_28 Shawty_29 Shawty_30 Shawty_31 Shawty_32 Shawty_33 Shawty_34 Shawty_35 Shawty_36 Shawty_37 Shawty_38 Shawty_39 Shawty_40 Shawty_41 Shawty_42 Shawty_43 Shawty_44 Shawty_45 Shawty_46 Shawty_47 Shawty_48 Shawty_49 Shawty_50 Shawty_51 Shawty_52 Shawty_53 Shawty_54 Shawty_55 — tRNA Shawty_56 — tRNA Shawty_57 Shawty_58 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MK433266 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Not in Pitt Archives |
| Available Files | |
| GenBank File for Phamerator | Download |