| Detailed Information for Phage Troy | |
| Discovery Information | |
| Isolation Host | Corynebacterium xerosis ATCC 373 |
| Found By | Shriya Meesala and Adam Aldaher |
| Year Found | 2017 |
| Location Found | Birmingham, AL USA |
| Finding Institution | University of Alabama at Birmingham |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 30°C |
| GPS Coordinates | 33.543682 N, 86.779633 W Map |
| Discovery Notes | Enriched sewage influent sample |
| Naming Notes | Originally it was presumed by some uninformed parties that Troy was dedicated to the city of the Trojans, but they were mistaken. In reality, it is consecrated after the lead basketball player/high school theater actor from the most icon Disney Channel Original Movie ever. A tribute to this outstanding, sensational trilogy, Troy is named after the male lead in High School Musical. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Apr 19, 2018 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 1137 |
| Genome length (bp) | 44609 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 17 bases |
| Overhang Sequence | CCCCAGCGCCTCGGGTA |
| GC Content | 68.1% |
| Sequencing Notes | Oddly, this genome seemed to have a buildup of reads that indicated a 19-base overhang rather than the 17-base overhang, whereas SamW clearly had buildups that indicated a 17-base overhang. But since Troy was in a MiSeq run where several other phages had lengthened overhangs, we assumed it was part of an oddity of the run, and so made this overhang match SamW's. |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | EP |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members | |
| Annotating Institution | University of Alabama at Birmingham |
| Annotation Status | In GenBank |
| Plaque Notes | Clear, distinct plaques of approximately 1mm in size. |
| Morphotype | Siphoviridae |
| Number of Genes | 60 |
| Number of tRNAs | 1 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewTroy_1 Troy_2 Troy_3 Troy_4 Troy_5 Troy_6 Troy_7 Troy_8 Troy_9 Troy_10 Troy_11 Troy_12 Troy_13 Troy_14 Troy_15 Troy_16 Troy_17 Troy_18 Troy_19 Troy_20 Troy_21 Troy_22 Troy_23 Troy_24 Troy_25 Troy_26 Troy_27 Troy_28 Troy_29 Troy_30 Troy_31 Troy_32 Troy_33 Troy_34 Troy_35 Troy_36 Troy_37 Troy_38 Troy_39 Troy_40 Troy_41 Troy_42 Troy_43 Troy_44 Troy_45 Troy_46 Troy_47 Troy_48 Troy_49 Troy_50 Troy_51 Troy_52 Troy_53 Troy_54 Troy_55 Troy_56 Troy_57 Troy_58 Troy_59 Troy_60 — tRNA Troy_61 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MH926061 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 59 |
| Pitt Freezer Box Grid# | E7 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |