Mycobacterium phage Yolo
Duplicate of Jovo
After sequencing, this phage had only 2 single nucleotide substitutions as differences from Jovo. Since both samples were collected at the same site, this phage is considered a duplicate isolate of Jovo.
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| Detailed Information for Phage Yolo | |
| Discovery Information | |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Former names | Phageaway |
| Found By | S. Won, C. To, P. Noe, Y. Kubota |
| Year Found | 2012 |
| Location Found | Los Angeles, CA USA |
| Finding Institution | University of California, Los Angeles |
| Program | Unavailable |
| From enriched soil sample? | Unknown |
| Isolation Temperature | Not entered |
| GPS Coordinates | 33.015373 N, 118.49964 W Map |
| Discovery Notes | Isolated and annotated by Team Phagealicious: Sohui Taylor Won, Cynthia To, Paul No, and Yuzu Kubota. Courses: MIMG 103AL (spring 2012) and MIMG 103BL (fall 2012) Instructor: Erin Sanders TAs: Shannon Beaty (AL) and Will Villella (BL) Curators of genome data: Khristina Ipapo (199-W13) |
| Naming Notes | Originally named Phageaway by discovery team. Renamed Yolo by Shannon Cooper and Khristina Ipapo in Feb. 2013. |
| Sequencing Information | |
| Sequencing Complete? | No |
| Sequencing Facility | The UCLA Genotyping and Sequencing Core |
| Shotgun Sequencing Method | 454 Pyrosequencing |
| Genome length (bp) | Unknown |
| Character of genome ends | Unknown |
| Fasta file available? | No |
| Characterization | |
| Cluster | A |
| Subcluster | A5 |
| Cluster Life Cycle | Temperate |
| Lysogeny Notes | Phage is lytic based on plaque morphology and presence of peptidase, terminase, and phosphoesterase genes. |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | Not sequenced |
| Plaque Notes | Clear plaques with an average diameter of 2.9mm. |
| Morphotype | Siphoviridae |
| Number of Genes | 83 |
| Number of tRNAs | 1 |
| Has been Phamerated? | No |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Designator | 2012UCLAphageawayPN |
| SEA Lysate Titer | 2.03x10^10 |
| Date of SEA Lysate Titering | May 24, 2012 |
| Pitt Freezer Box# | 3 |
| Pitt Freezer Box Grid# | E12 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| Final DNAMaster File | Download |
