Gordonia phage Catfish
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Detailed Information for Phage Catfish
Discovery Information
Isolation HostGordonia terrae 3612
Found ByLauren Nguyen
Year Found2017
Location FoundTyler, TX USA
Finding InstitutionUniversity of Louisiana at Monroe
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates32.2529 N, 95.3152 W Map
Discovery NotesIn a ball park's dirt parking lot.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 26, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage164
Genome length (bp)46888
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceAGTCCGCCGGT
GC Content65.0%
Sequencing NotesOriginal sample was mixed with Dogfish, sample was purified using PCR to verify.
Fasta file available?Yes: Download fasta file
Characterization
ClusterSingleton
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members
Annotation StatusIn GenBank
Has been Phamerated?Yes
Gene List

Click to View

Catfish_1

Catfish_2
(esterase)

Catfish_3

Catfish_4
(lysin B)

Catfish_5
(terminase small subunit)

Catfish_6
(terminase large subunit)

Catfish_7
(portal protein)

Catfish_8
(capsid maturation protease)

Catfish_9
(major capsid protein)

Catfish_10

Catfish_11
(head-to-tail connector complex protein)

Catfish_12
(head-to-tail connector complex protein)

Catfish_13

Catfish_14

Catfish_15
(head-to-tail connector complex protein)

Catfish_16
(major tail protein)

Catfish_17
(tail fiber protein)

Catfish_18
(tail assembly chaperone)

Catfish_19
(tail assembly chaperone)

Catfish_20
(tape measure protein)

Catfish_21
(minor tail protein)

Catfish_22
(minor tail protein)

Catfish_23
(lysin A)

Catfish_24

Catfish_25

Catfish_26
(minor tail protein)

Catfish_27
(minor tail protein)

Catfish_28

Catfish_29

Catfish_31
(helix-turn-helix DNA binding domain protein)

Catfish_32
(helix-turn-helix DNA binding domain protein)

Catfish_33
(membrane protein)

Catfish_34

Catfish_35

Catfish_36

Catfish_37
(integrase)

Catfish_38
(membrane protein)

Catfish_39
(immunity repressor)

Catfish_40
(helix-turn-helix DNA binding domain protein)

Catfish_41

Catfish_42

Catfish_43

Catfish_44
(exonuclease)

Catfish_45

Catfish_46
(ERF family ssDNA binding protein)

Catfish_47

Catfish_48

Catfish_49
(HNH endonuclease)

Catfish_50

Catfish_51
(DnaB-like dsDNA helicase)

Catfish_52
(ssDNA-binding protein)

Catfish_53

Catfish_54

Catfish_55

Catfish_56

Catfish_57
(RusA-like resolvase)

Catfish_58

Catfish_59

Catfish_60

Catfish_61
(helix-turn-helix DNA binding domain protein)

Catfish_62

Catfish_63
(NrdH-like glutaredoxin)

Catfish_64
(HNH endonuclease)

Catfish_65

Catfish_66
(MRE11 double-strand break endo/exonuclease)

Catfish_67

Catfish_68

Catfish_69

Catfish_70
(ribbon-helix-helix DNA binding domain protein)

Catfish_71

Catfish_72

Catfish_73

Catfish_74

Catfish_75

Catfish_76

Catfish_77

Catfish_78

Catfish_79

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH697580
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 59
Pitt Freezer Box Grid# C4
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload