Mycobacterium phage MalagasyRose
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Detailed Information for Phage MalagasyRose
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByDeborah Jacobs-Sera
Year Found2018
Location FoundAnsirabe, Madagascar
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates19.8633 S, 47.034005 E Map
Discovery NotesEnriched, isolated, purified, and amplified at room temperature.
Naming NotesThe sample was taken from the dirt around a Rosebush. Malagasy was added to the name as coming from "Madagascar".
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJul 19, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage51
Genome length (bp)54301
Character of genome ends3' Sticky Overhang
End Determination NotesThe left end is quite clear from sequencing read buildup, but the right end is not. As of now, therefore, the exact length of the 3' overhang is not known.
GC Content65.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterSingleton
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members
Annotation StatusBeing Annotated (Expected completion by 1/20/2019)
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
EM PictureDownload