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Arthrobacter phage Mendel
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Detailed Information for Phage Mendel
Discovery Information
Isolation HostArthrobacter globiformis B-2979
Found ByPatrick Rimple
Year Found2017
Location FoundBuffalo, NY USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates42.93382 N, 78.64562 W Map
Discovery NotesCame from a dirt pile used in landscaping
Naming NotesAs I was out of names Mendel being a famous scientist seemed reasonable
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 11, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2177
Genome length (bp)19428
Character of genome endsUnknown
End Determination NotesThough not yet experimentally verified, we believe that it's likely that this phage's genome ends are covalently bound to a Terminal Protein when in the capsid. The evidence for this is the similarity of several genes to genes in phi29, a well-studied example of terminal-protein bound genomes. The genome size is also similar to phi29, and no sequencing reads continued past the genome ends, which is unusual in the case of a genome with 3' or 5' genome extensions.
GC Content59.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterFD
Subcluster--
Cluster Life CycleLytic
Lysogeny NotesMakes mesas- did not do further testing yet
Other Cluster Members

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Annotation StatusIn GenBank
Plaque Notes1 mm or less, clear
Has been Phamerated?Yes
Gene List
Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK016500
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 6
Pitt Freezer Box Grid# C7
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload