Gordonia phage Bantam
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Detailed Information for Phage Bantam
Discovery Information
Isolation HostGordonia terrae 3612
Found ByMax Wetzel and Marissa Leopold
Year Found2015
Location FoundRiver Falls, WI USA
Finding InstitutionUniversity of Wisconsin-River Falls
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates44.979117 N, 92.759906 W Map
Discovery NotesSoil from east bank of St Croix River, near kayak launch site, next to small stream running from the river to a walking path
Naming NotesWe weren't sure what to name it, so I, Max, went onto www.dictionary.reference.com and looked for a synonym for something that is small, but fierce. Bantam came up as a suggestion and I stuck with that one.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 5, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1829
Genome length (bp)92580
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGCAGCACTC
GC Content64.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDL
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque NotesOur plaque morphology were small and clear.
MorphotypeSiphoviridae
Number of Genes168
Number of tRNAs2
Has been Phamerated?Yes
Gene List

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Bantam_1

Bantam_2
(ThyA-like thymidylate synthase)

Bantam_3
(phosphoribosyltransferase)

Bantam_4
(nicotinate ribosyltransferase)

Bantam_5

Bantam_6

Bantam_7

Bantam_8
(HNH endonuclease)

Bantam_10

Bantam_11

Bantam_12
(terminase)

Bantam_13
(portal protein)

Bantam_14
(MuF-like minor capsid protein)

Bantam_15

Bantam_16
(capsid decoration protein)

Bantam_17
(major capsid protein)

Bantam_18

Bantam_19

Bantam_20

Bantam_21

Bantam_22

Bantam_23
(endonuclease VII)

Bantam_24
(major tail protein)

Bantam_25

Bantam_26
(tail assembly chaperone)

Bantam_27
(tail assembly chaperone)

Bantam_28
(tape measure protein)

Bantam_29
(minor tail protein)

Bantam_30
(minor tail protein)

Bantam_31
(lysin A, protease C39 domain)

Bantam_32
(lysin A, L-Ala-D-Glu peptidase domain)

Bantam_33

Bantam_34

Bantam_35

Bantam_36
(minor tail protein)

Bantam_37
(minor tail protein)

Bantam_38

Bantam_39

Bantam_40
(minor tail protein)

Bantam_41

Bantam_42
(Lsr2-like DNA bridging protein)

Bantam_43

Bantam_44

Bantam_45

Bantam_46

Bantam_47

Bantam_48

Bantam_49

Bantam_50

Bantam_51

Bantam_52

Bantam_53

Bantam_54

Bantam_55
(DprA-like DNA processing chain A)

Bantam_56

Bantam_57

Bantam_58

Bantam_59

Bantam_60

Bantam_61

Bantam_63

Bantam_64
(tyrosine integrase)

Bantam_65

Bantam_66
(immunity repressor)

Bantam_67

Bantam_68

Bantam_69

Bantam_70

Bantam_71

Bantam_72

Bantam_73

Bantam_74

Bantam_75

Bantam_76

Bantam_77
(WhiB family transcription factor)

Bantam_78

Bantam_79

Bantam_80

Bantam_81

Bantam_82

Bantam_83

Bantam_84
(ssDNA binding protein)

Bantam_85
(NrdH-like glutaredoxin)

Bantam_86
(DNA primase/helicase)

Bantam_87

Bantam_88

Bantam_89
(antirepressor)

Bantam_90

Bantam_91

Bantam_92

Bantam_93
(excise)

Bantam_94
(ssDNA binding protein)

Bantam_95
(RecE-like exonuclease)

Bantam_96

Bantam_97
(helix-turn-helix DNA binding protein)

Bantam_98

Bantam_99
(tRNA nucleotidyltransferase)

Bantam_100

Bantam_101
(RNA ligase)

Bantam_102
(HNH endonuclease)

Bantam_103

Bantam_104

Bantam_105

Bantam_106

Bantam_107

Bantam_108

Bantam_109
(HNH endonuclease)

Bantam_110

Bantam_111

Bantam_112

Bantam_113
(polynucleotide kinase)

Bantam_114

Bantam_115

Bantam_116

Bantam_117
(5' nucleotidase)

Bantam_118

Bantam_119

Bantam_120

Bantam_121

Bantam_122

Bantam_123

Bantam_124

Bantam_125

Bantam_126

Bantam_127

Bantam_128

Bantam_129

Bantam_130

Bantam_131
(lysin B)

Bantam_132

Bantam_133

Bantam_134
(toxin)

Bantam_135
(antitoxin)

Bantam_136

Bantam_137

Bantam_138

Bantam_139

Bantam_140

Bantam_141

Bantam_142

Bantam_143

Bantam_144

Bantam_145

Bantam_146

Bantam_147

Bantam_148

Bantam_149

Bantam_150

Bantam_151

Bantam_152

Bantam_153

Bantam_154

Bantam_155

Bantam_156

Bantam_157

Bantam_158

Bantam_159

Bantam_160

Bantam_161

Bantam_162

Bantam_163

Bantam_164

Bantam_165
(ArdA-like antirestriction protein)

Bantam_166

Bantam_167

Bantam_168

Bantam_169

Bantam_170

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKX557272
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 1.3*10^7 PFU/mL
Date of SEA Lysate Titering Oct 14, 2015
Pitt Freezer Box# 24
Pitt Freezer Box Grid# B4
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload