| Detailed Information for Phage HH92 | |
| Discovery Information | |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Former names | HumnaHumna92 |
| Found By | Amanda Y. Chandler |
| Year Found | 2011 |
| Location Found | Machias , ME USA |
| Finding Institution | University of Maine, Machias |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Unknown |
| Isolation Temperature | Not entered |
| GPS Coordinates | 44.708381 N, 67.458035 W Map |
| Discovery Notes | From compost pile behind Torrey Hall on The University of Maine at Machias campus. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 25, 2013 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Ion Torrent |
| Approximate Shotgun Coverage | 750 |
| Sanger Finishing Reactions | 9 |
| Genome length (bp) | 53746 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 14 bases |
| Overhang Sequence | TAAGCCGCGCGGTA |
| GC Content | 67.4% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | Q |
| Subcluster | -- |
| Cluster Life Cycle | Temperate |
| Other Cluster Members | |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | The plaques are small with no halos. |
| Morphotype | Siphoviridae |
| Number of Genes | 84 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewHH92_1 HH92_2 HH92_3 HH92_4 HH92_5 HH92_6 HH92_7 HH92_8 HH92_9 HH92_10 HH92_11 HH92_12 HH92_13 HH92_14 HH92_15 HH92_16 HH92_17 HH92_18 HH92_19 HH92_20 HH92_21 HH92_22 HH92_23 HH92_24 HH92_25 HH92_26 HH92_27 HH92_28 HH92_29 HH92_30 HH92_31 HH92_32 HH92_33 HH92_34 HH92_35 HH92_36 HH92_37 HH92_38 HH92_39 HH92_40 HH92_41 HH92_42 HH92_43 HH92_44 HH92_45 HH92_46 HH92_47 HH92_48 HH92_49 HH92_50 HH92_51 HH92_52 HH92_53 HH92_54 HH92_55 HH92_56 HH92_57 HH92_58 HH92_59 HH92_60 HH92_61 HH92_62 HH92_63 HH92_64 HH92_65 HH92_66 HH92_67 HH92_68 HH92_69 HH92_70 HH92_71 HH92_72 HH92_73 HH92_74 HH92_75 HH92_76 HH92_77 HH92_78 HH92_79 HH92_80 HH92_81 HH92_82 HH92_83 HH92_84 |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | KJ538722 |
| Refseq Number | None yet |
| Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
| Archiving Info | |
| Archiving status | Archived |
| SEA Designator | 2011MEMAhumnahumna92AYC |
| Pitt Freezer Box# | 25 |
| Pitt Freezer Box Grid# | 73 |
| Available Files | |
| EM Picture | Download |