| Detailed Information for Phage Island3 | |
| Discovery Information | |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Ian Bayles |
| Year Found | 2008 |
| Location Found | Oakland, Pittsburgh, PA USA |
| Finding Institution | Carnegie Mellon University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 40.44218 N, 79.9429 W Map |
| Discovery Notes | From saturated dirt/mud/mulch, depth 1 cm, trees and mulch pit nearby, near the "fence," central campus Carnegie Mellon University. 18.88°C Isolated from same enrichment as 2008CAMUBPrimeIB |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Apr 27, 2010 |
| Sequencing Facility | Joint Genomics Institute |
| Shotgun Sequencing Method | Sanger |
| Sequencer Used | Sanger ABI 3730 |
| Read Type | Paired-end reads |
| Genome length (bp) | 47287 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 11 bases |
| GC Content | 66.8% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | I |
| Subcluster | I1 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members | |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | 4mm/Bulls-eye/24 hours/37C |
| Morphotype | Siphoviridae |
| Number of Genes | 76 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewIsland3_1 Island3_2 Island3_3 Island3_4 Island3_5 Island3_6 Island3_7 Island3_8 Island3_9 Island3_10 Island3_11 Island3_12 Island3_13 Island3_14 Island3_15 Island3_16 Island3_17 Island3_18 Island3_19 Island3_20 Island3_21 Island3_22 Island3_23 Island3_24 Island3_25 Island3_26 Island3_27 Island3_28 Island3_29 Island3_30 Island3_31 Island3_32 Island3_33 Island3_34 Island3_35 Island3_36 Island3_37 Island3_38 Island3_39 Island3_40 Island3_41 Island3_42 Island3_43 Island3_44 Island3_45 Island3_46 Island3_47 Island3_48 Island3_49 Island3_50 Island3_51 Island3_52 Island3_53 Island3_54 Island3_55 Island3_56 Island3_57 Island3_58 Island3_59 Island3_60 Island3_61 Island3_62 Island3_63 Island3_64 Island3_65 Island3_66 Island3_67 Island3_68 Island3_69 Island3_70 Island3_71 Island3_72 Island3_73 Island3_74 Island3_75 Island3_76 |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | HM152765 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Designator | 2008CAMUisland3IB |
| SEA Lysate Titer | 1.6e9 |
| Pitt Freezer Box# | 2 |
| Pitt Freezer Box Grid# | A9 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| Virtual Digest Picture | Download |
| EM Picture | Download |
