Mycobacterium phage Madruga
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Detailed Information for Phage Madruga
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Former namesE
Found ByJames Daltro Lima Jr
Year Found2011
Location FoundSao Paulo, Brazil
Finding InstitutionUniversidade Federal de Sao Paulo
ProgramUnavailable
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates23.651246 S, 46.620748 W Map
Discovery Notesisolated from a compost production cell in the Sao Paulo Zoo (Fundação Parque Zoológico de São Paulo)
Naming Notesthe set of characters of the Mexican television sitcom "El Chavo del ocho" that has been broadcast by a Brazilian TV Network since 1984
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedApr 22, 2014
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage40
Genome length (bp)69377
Character of genome endsCircularly Permuted
GC Content50.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterU
Subcluster--
Cluster Life CycleLytic
Other Cluster Members

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Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes106
Number of tRNAs1
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Madruga_1

Madruga_2

Madruga_3

Madruga_4
(capsid accessory protein)

Madruga_5
(terminase large subunit)

Madruga_6
(portal protein)

Madruga_7

Madruga_8

Madruga_9

Madruga_10

Madruga_11

Madruga_12

Madruga_13

Madruga_14

Madruga_15

Madruga_16

Madruga_17
(head maturation protease)

Madruga_18
(MuF-like protein)

Madruga_19

Madruga_20
(minor capsid protein)

Madruga_21
(capsid protein)

Madruga_22

Madruga_23

Madruga_24

Madruga_25

Madruga_26

Madruga_27

Madruga_28

Madruga_29
(major tail protein)

Madruga_30
(tail assembly chaperone)

Madruga_31
(tail assembly chaperone)

Madruga_32
(tapemeasure)

Madruga_33
(minor tail protein)

Madruga_34
(minor tail protein)

Madruga_35
(minor tail protein)

Madruga_36
(minor tail protein)

Madruga_37

Madruga_38

Madruga_39
(lysin A)

Madruga_40
(lysin B)

Madruga_41

Madruga_42

Madruga_43

Madruga_44

Madruga_45

Madruga_46

Madruga_47

Madruga_48

Madruga_49

Madruga_50

Madruga_51

Madruga_52

Madruga_53

Madruga_54

Madruga_55

Madruga_56

Madruga_57

Madruga_58

Madruga_59

Madruga_60

Madruga_61

Madruga_62

Madruga_63

Madruga_64

Madruga_65

Madruga_66

Madruga_67

Madruga_68

Madruga_69

Madruga_70

Madruga_71

Madruga_72

Madruga_73

Madruga_74
(helicase)

Madruga_75

Madruga_76

Madruga_77

Madruga_78

Madruga_79
(helicase/nuclease domain protein)

Madruga_80

Madruga_81

Madruga_82

Madruga_83
(RecA)

Madruga_84

Madruga_85 — tRNA

Madruga_86

Madruga_87

Madruga_88

Madruga_89
(DNA polymerase III)

Madruga_90

Madruga_91
(RuvC)

Madruga_92

Madruga_93

Madruga_94

Madruga_95

Madruga_96

Madruga_97

Madruga_98

Madruga_99

Madruga_100

Madruga_101
(MazG-like protein)

Madruga_102

Madruga_103

Madruga_104

Madruga_105

Madruga_106
(DNA primase/polymerase)

Madruga_107

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKR997933
Refseq NumberNone yet
Archiving Info
Archiving status Ignore