Detailed Information for Phage ProfFrink | |
Discovery Information | |
Isolation Host | Arthrobacter globiformis B-2979 |
Found By | Megan Dennis |
Year Found | 2021 |
Location Found | Poughkeepsie, NY USA |
Finding Institution | Marist College |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | No |
Isolation Temperature | 30°C |
GPS Coordinates | 41.694711 N, 73.91285 W Map |
Discovery Notes | Damp soil from surface to approximately 1 inch below surface, soil is dense/full of clay, a few spruce needles were present in the direct isolation. Collected in early August one day after rain, air temperature approx 80F. |
Naming Notes | Named after Springfield's best mad scientist & nerdy professor. |
Sequencing Information | |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 11, 2023 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 1036 |
Genome length (bp) | 54478 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 9 bases |
Overhang Sequence | CGCCGACCT |
GC Content | 51.7% |
Fasta file available? | Yes: Download fasta file |
Characterization | |
Cluster | AW |
Subcluster | -- |
Cluster Life Cycle | Lytic |
Other Cluster Members |
Click to View |
Annotating Institution | Marist College |
Annotation Status | In GenBank |
Plaque Notes | Plaques are clear, approximately 1mm in diameter |
Morphotype | Siphoviridae |
Number of Genes | 87 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
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Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info | |
Uploaded to GenBank? | Yes |
GenBank Accession | PQ244014 |
Refseq Number | None yet |
Archiving Info | |
Archiving status | Archived |
SEA Lysate Titer | 1.7 x10^10 pfu/ml |
Pitt Freezer Box# | 134 |
Pitt Freezer Box Grid# | H7 |
Available Files | |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |
GenBank File for Phamerator | Download |