The Actinobacteriophage Database

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Detailed Information for Phage Quantum
Discovery Information
Isolation Host	Streptomyces lividans JI 1326
Found By	Rohan Krishnamoorthi and Paul Kwon
Year Found	2023
Location Found	St. Louis, MO United States of America
Finding Institution	Washington University in St. Louis
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	No
Isolation Temperature	26°C
GPS Coordinates	38.64015 N, 90.26999 W Map
Discovery Notes	The soil sample was taken from a 3-4 cm hole and was very dry. The soil was packed, with some bark, branches, twigs, and small rocks present. Tall vegetation was also present near the site, with the collection site being secluded and shaded. The collection time was 4:05 pm on 8/31/2023, with the ambient air temperature being 79 degrees Fahrenheit or 26.1111 degrees Celsius. The GPS coordinates of the site are 38.64015 degrees North, 90.26999 degrees West.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Jul 23, 2024
Sequencing Facility	The McDonnell Genome Institute at Washington University
Shotgun Sequencing Method	Illumina Sequencing
Approximate Shotgun Coverage	124
Genome length (bp)	186377
Character of genome ends	Direct Terminal Repeat
Direct Terminal Repeat Length	1053 bp
GC Content	66.7%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	BM
Subcluster	--
Cluster Life Cycle	Lytic
Other Cluster Members	Click to View EhyElimayoE Frankenweenie JustBecause Kela Kradal Nirvana Quantum Satis
Annotating Institution	Washington University in St. Louis
Annotation Status	In GenBank
Morphotype	Siphoviridae
Number of Genes	323
Number of tRNAs	12
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View Quantum_1 Quantum_2 Quantum_3 Quantum_4 Quantum_5 Quantum_6 (ThyX-like thymidylate synthase) Quantum_7 (DNA methyltransferase) Quantum_8 Quantum_9 (metalloprotease) Quantum_10 Quantum_11 (PnuC-like Nicotinamide riboside transporter) Quantum_12 (DNA binding protein) Quantum_13 Quantum_14 (O-methyltransferase) Quantum_15 Quantum_16 Quantum_17 Quantum_18 Quantum_19 Quantum_20 Quantum_21 Quantum_22 (terminase) Quantum_23 Quantum_24 Quantum_25 (portal protein) Quantum_26 (capsid maturation protease) Quantum_27 Quantum_28 (major capsid protein) Quantum_29 Quantum_30 Quantum_31 Quantum_32 Quantum_33 Quantum_34 Quantum_35 Quantum_36 Quantum_37 Quantum_38 Quantum_39 Quantum_40 Quantum_41 (nucleotidyl transferase) Quantum_42 Quantum_43 Quantum_44 Quantum_45 Quantum_46 Quantum_47 Quantum_48 Quantum_49 Quantum_50 Quantum_51 Quantum_52 (glycosyltransferase) Quantum_53 (glycosyltransferase) Quantum_54 Quantum_55 Quantum_56 (major tail protein) Quantum_57 (tail assembly chaperone) Quantum_58 Quantum_59 (tape measure protein) Quantum_60 (minor tail protein) Quantum_61 (minor tail protein) Quantum_62 Quantum_63 Quantum_64 Quantum_65 (RuvC-like resolvase) Quantum_66 (DNA polymerase I) Quantum_67 Quantum_68 (DNA primase/helicase) Quantum_69 Quantum_70 Quantum_71 (Cas4 exonuclease) Quantum_72 (glycosyltransferase) Quantum_73 Quantum_74 Quantum_75 Quantum_76 Quantum_77 (DnaE-like DNA polymerase III (alpha)) Quantum_78 Quantum_79 Quantum_80 Quantum_81 Quantum_82 (DNA helicase) Quantum_83 (helix-turn-helix DNA binding domain) Quantum_84 Quantum_85 Quantum_86 (helix-turn-helix DNA binding domain) Quantum_87 Quantum_88 Quantum_89 Quantum_90 Quantum_91 Quantum_92 Quantum_93 Quantum_94 Quantum_95 (peptidase) Quantum_96 (glycosyltransferase) Quantum_97 Quantum_98 Quantum_99 Quantum_100 (helix-turn-helix DNA binding domain) Quantum_101 Quantum_102 Quantum_103 Quantum_104 Quantum_105 Quantum_106 Quantum_107 Quantum_108 Quantum_109 Quantum_110 Quantum_111 (hydrolase) Quantum_112 (DprA-like DNA processing chain A) Quantum_113 Quantum_114 Quantum_115 Quantum_116 Quantum_117 (endolysin) Quantum_118 Quantum_119 Quantum_120 Quantum_121 Quantum_122 (ppGpp synthesis/degradation protein, SpoT-like) Quantum_123 (DNA helicase) Quantum_124 Quantum_125 Quantum_126 Quantum_127 Quantum_128 Quantum_129 Quantum_130 Quantum_131 Quantum_132 Quantum_133 Quantum_134 Quantum_135 (Ro-like RNA binding protein) Quantum_136 Quantum_137 Quantum_138 Quantum_139 Quantum_140 — tRNA (tRNA-His(gtg)) Quantum_141 — tRNA (tRNA-Ile(gat)) Quantum_142 (FtsK-like DNA translocase) Quantum_143 Quantum_144 Quantum_145 (DNA binding, HU-like domain) Quantum_146 Quantum_147 Quantum_148 Quantum_149 Quantum_150 Quantum_151 (helix-turn-helix DNA binding domain) Quantum_152 Quantum_153 Quantum_154 Quantum_155 Quantum_156 Quantum_157 Quantum_158 Quantum_159 Quantum_160 Quantum_161 Quantum_162 Quantum_163 Quantum_164 Quantum_165 Quantum_166 Quantum_167 (histidine triad nucleotide binding protein) Quantum_168 Quantum_169 Quantum_170 Quantum_171 (MutT-like nucleotide pyrophosphohydrolase) Quantum_172 (helix-turn-helix DNA binding domain) Quantum_173 Quantum_174 Quantum_175 (toxin in toxin/antitoxin system, RelE-like) Quantum_176 Quantum_177 Quantum_178 Quantum_179 Quantum_180 Quantum_181 Quantum_182 (DnaB-like dsDNA helicase) Quantum_183 Quantum_184 Quantum_185 Quantum_186 (DNA primase) Quantum_187 Quantum_188 Quantum_189 Quantum_190 Quantum_191 Quantum_192 Quantum_193 — tRNA (tRNA-Trp(cca)) Quantum_194 — tRNA (tRNA-Pro(cgg)) Quantum_195 — tRNA (tRNA-Thr(cgt)) Quantum_196 — tRNA (tRNA-Met(cat)) Quantum_197 — tRNA (tRNA-Lys(ctt)) Quantum_198 — tRNA (tRNA-Arg(acg)) Quantum_199 — tRNA (tRNA-Asp(gtc)) Quantum_200 — tRNA (tRNA-Phe(gaa)) Quantum_201 — tRNA (tRNA-Gln(ctg)) Quantum_202 — tRNA (tRNA-Asn(gtt)) Quantum_203 Quantum_204 Quantum_205 Quantum_206 Quantum_207 Quantum_208 Quantum_209 Quantum_210 Quantum_211 (deoxycytidylate deaminase) Quantum_212 Quantum_213 Quantum_214 Quantum_215 Quantum_216 Quantum_217 (helix-turn-helix DNA binding domain) Quantum_218 Quantum_219 Quantum_220 Quantum_221 Quantum_222 Quantum_223 Quantum_224 Quantum_225 Quantum_226 Quantum_227 (tellurium resistance protein D family) Quantum_228 Quantum_229 Quantum_230 Quantum_231 Quantum_232 Quantum_233 Quantum_234 Quantum_235 Quantum_236 Quantum_237 Quantum_238 Quantum_239 (helix-turn-helix DNA binding domain) Quantum_240 Quantum_241 Quantum_242 Quantum_243 (phosphatase) Quantum_244 Quantum_245 Quantum_246 Quantum_247 Quantum_248 Quantum_249 Quantum_250 Quantum_251 Quantum_252 Quantum_253 Quantum_254 Quantum_255 Quantum_256 Quantum_257 Quantum_258 Quantum_259 Quantum_260 Quantum_261 Quantum_262 Quantum_263 Quantum_264 (ADP-ribosyltransferase) Quantum_265 Quantum_266 Quantum_267 Quantum_268 Quantum_269 Quantum_270 Quantum_271 Quantum_272 Quantum_273 Quantum_274 Quantum_275 Quantum_276 Quantum_277 Quantum_278 Quantum_279 Quantum_280 Quantum_281 Quantum_282 Quantum_283 Quantum_284 Quantum_285 Quantum_286 Quantum_287 Quantum_288 Quantum_289 Quantum_290 Quantum_291 Quantum_292 Quantum_293 Quantum_294 Quantum_295 Quantum_296 Quantum_297 Quantum_298 Quantum_299 Quantum_300 Quantum_301 Quantum_302 Quantum_303 Quantum_304 Quantum_305 Quantum_306 Quantum_307 Quantum_308 Quantum_309 Quantum_310 Quantum_311 Quantum_312 Quantum_313 Quantum_314 Quantum_315 Quantum_316 Quantum_317 Quantum_318 Quantum_319 Quantum_320 Quantum_321 Quantum_322 Quantum_323 Quantum_324 Quantum_325 Quantum_326 Quantum_327 Quantum_328 Quantum_329 Quantum_330 Quantum_331 Quantum_332 Quantum_333 Quantum_334 Quantum_335
Submitted Minimal DNA Master File	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	PQ412544
Refseq Number	None yet
Archiving Info
Archiving status	Not in Pitt Archives
SEA Lysate Titer	1.33*10^9
Available Files
Plaque Picture	Download
Restriction Digest Picture	Download
EM Picture	Download
GenBank File for Phamerator	Download

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