Microbacterium phage SBlackberry
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Detailed Information for Phage SBlackberry
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found ByMelissa Acevedo
Year Found2020
Location FoundEastvale, CA United States
Finding InstitutionLa Sierra University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature7°C
GPS Coordinates33.969167 N, 117.574444 W Map
Discovery NotesLarge pot in my backyard with a medium-sized citrus tree and compost.
Naming NotesSomeone special to me let me name their car and I named it after that car.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 14, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage463
Genome length (bp)42048
Character of genome endsCircularly Permuted
GC Content66.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterEJ
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members
Annotating InstitutionLa Sierra University
Annotation StatusIn GenBank
Plaque NotesMedium, circular, clear
MorphotypeSiphoviridae
Number of Genes58
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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SBlackberry_1
(terminase small subunit)

SBlackberry_2

SBlackberry_3
(terminase large subunit)

SBlackberry_4
(portal protein)

SBlackberry_5
(minor capsid protein)

SBlackberry_6

SBlackberry_7

SBlackberry_8

SBlackberry_9
(scaffolding protein)

SBlackberry_10
(major capsid protein)

SBlackberry_11

SBlackberry_12
(head-to-tail adaptor)

SBlackberry_13
(head-to-tail stopper)

SBlackberry_14

SBlackberry_15
(tail terminator)

SBlackberry_16
(major tail protein)

SBlackberry_17
(tail assembly chaperone)

SBlackberry_18
(tail assembly chaperone)

SBlackberry_19
(tape measure protein)

SBlackberry_20
(minor tail protein)

SBlackberry_21
(minor tail protein)

SBlackberry_22

SBlackberry_23
(minor tail protein)

SBlackberry_24
(minor tail protein)

SBlackberry_25

SBlackberry_26

SBlackberry_27
(lysin A)

SBlackberry_28

SBlackberry_29
(lysin B)

SBlackberry_30
(holin)

SBlackberry_31
(helix-turn-helix DNA binding domain protein)

SBlackberry_32

SBlackberry_33
(DNA helicase)

SBlackberry_34

SBlackberry_35

SBlackberry_36

SBlackberry_37

SBlackberry_38

SBlackberry_39

SBlackberry_40
(holliday junction resolvase)

SBlackberry_41

SBlackberry_42
(Cas4 family exonuclease)

SBlackberry_43

SBlackberry_44

SBlackberry_45

SBlackberry_46
(RecA-like DNA recombinase)

SBlackberry_47

SBlackberry_48
(DNA primase/polymerase)

SBlackberry_49
(DNA polymerase I)

SBlackberry_50

SBlackberry_51
(PurA-like adenylosuccinate synthetase)

SBlackberry_52

SBlackberry_53

SBlackberry_54

SBlackberry_55

SBlackberry_56
(deoxyuridine triphosphatase)

SBlackberry_57

SBlackberry_58

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMZ747515
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 120
Pitt Freezer Box Grid# B11
Available Files
GenBank File for PhameratorDownload