BLAST and GeneMark available upon entering GPS coordinates
| Detailed Information for Phage Typher | |
| Discovery Information | |
| Isolation Host | Microbacterium foliorum NRRL B-24224 |
| Former names | Paguette |
| Found By | Jhonny Rivera and Kayla Pimentel |
| Year Found | 2020 |
| Location Found | Amherst, MA USA |
| Finding Institution | University of Massachusetts Amherst |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Unknown |
| Isolation Temperature | 30°C |
| GPS Coordinates | Unavailable |
| Discovery Notes | After trying many times to get plaques from collecting dirt, we continued to get nothing after 22 plates. We proceeded to adopt a phage from a lab staff member in the lab department. She collected this phage from the dirt surrounding our nearby campus pond. It appears she had better luck than we did because we also tried to collect dirt from the campus pond and still got nothing. |
| Naming Notes | Paguette was our attempt to combine baguette and phage in a unique way. We then named our phage Typher after some debate. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 8, 2021 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 3345 |
| Genome length (bp) | 41864 |
| Character of genome ends | Circularly Permuted |
| GC Content | 67.0% |
| Fasta file available? | Available upon entering GPS coordinates |
| Characterization | |
| Cluster | EJ |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
Click to View |
| Annotating Institution | University of Massachusetts Amherst |
| Annotation Status | Being Annotated (Expected completion by 5/1/2021) |
| Plaque Notes | The plaques are cloudy and appear to have a ring in the center of them. Consistent morphologies throughout the whole plate. |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewTypher_Draft_1 Typher_Draft_2 Typher_Draft_3 Typher_Draft_4 Typher_Draft_5 Typher_Draft_6 Typher_Draft_7 Typher_Draft_8 Typher_Draft_9 Typher_Draft_10 Typher_Draft_11 Typher_Draft_12 Typher_Draft_13 Typher_Draft_14 Typher_Draft_15 Typher_Draft_16 Typher_Draft_17 Typher_Draft_18 Typher_Draft_19 Typher_Draft_20 Typher_Draft_21 Typher_Draft_22 Typher_Draft_23 Typher_Draft_24 Typher_Draft_25 Typher_Draft_26 Typher_Draft_27 Typher_Draft_28 Typher_Draft_29 Typher_Draft_30 Typher_Draft_31 Typher_Draft_32 Typher_Draft_33 Typher_Draft_34 Typher_Draft_35 Typher_Draft_36 Typher_Draft_37 Typher_Draft_38 Typher_Draft_39 Typher_Draft_40 Typher_Draft_41 Typher_Draft_42 Typher_Draft_43 Typher_Draft_44 Typher_Draft_45 Typher_Draft_46 Typher_Draft_47 Typher_Draft_48 Typher_Draft_49 Typher_Draft_50 Typher_Draft_51 Typher_Draft_52 Typher_Draft_53 Typher_Draft_54 Typher_Draft_55 Typher_Draft_56 Typher_Draft_57 Typher_Draft_58 Typher_Draft_59 Typher_Draft_60 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Not in Pitt Archives |