Gordonia phage VanLee
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| Detailed Information for Phage VanLee | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Vanessa Franco and Kaylee Barnhill |
| Year Found | 2020 |
| Location Found | Tampa, FL United States of America |
| Finding Institution | University of South Florida |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 31°C |
| GPS Coordinates | 28.063333 N, 82.411389 W Map |
| Discovery Notes | Isolated from a moist soil sample from Tampa, Florida (28.063333N, 82.411389W. VanLee has host range and can infect Gordonia terrae with the same efficiency as G. rubripertincta |
| Naming Notes | Naming is based on the two students who found and characterized the phage VANessa and kayLEE. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Dec 18, 2020 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 1488 |
| Genome length (bp) | 84560 |
| Character of genome ends | Circularly Permuted |
| GC Content | 67.8% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | Singleton |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members | |
| Annotating Institution | University of South Florida |
| Annotation Status | In GenBank |
| Morphotype | Siphoviridae |
| Number of Genes | 164 |
| Number of tRNAs | 1 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List | |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MZ028627 |
| Refseq Number | None yet |
| Published in Paper | Franco et al 2021, Microbiology Resource Announcements: Genome Sequence of VanLee, a Singleton Actinobacteriophage That Infects Multiple Gordonia Strains |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 118 |
| Pitt Freezer Box Grid# | F1 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
