| Detailed Information for Phage Vibaki | |
| Discovery Information | |
| Isolation Host | Arthrobacter globiformis B-2979 |
| Found By | Helena Humphreys |
| Year Found | 2018 |
| Location Found | Kirksville, MO USA |
| Finding Institution | University of Wisconsin-River Falls |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 28°C |
| GPS Coordinates | 40.1943 N, 92.588 W Map |
| Discovery Notes | This soil sample was obtained at A.T. Still University in Kirksville, MO. I obtained this around 4:15 pm on September 9, 2018. The weather that day was approximately 65 degrees with a forecast of cloudy and humid. I found the location to collect the soil near a bush under some wood chips which I dug approximately 20 mm deep prior to collecting the sample. The soil was very moist and dark brown in color with a tarry, wet texture. My phage did not have a PCR cluster and it was only cut by HaeIII enzyme. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Feb 8, 2019 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 1979 |
| Genome length (bp) | 48201 |
| Character of genome ends | Circularly Permuted |
| GC Content | 66.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | FL |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members | |
| Annotating Institution | University of Wisconsin-River Falls |
| Annotation Status | In GenBank |
| Plaque Notes | My plaques were too small to measure, but they were clear in appearance and had an overall uniform and symmetric shape. They did not have a halo appearance. |
| Morphotype | Myoviridae |
| Number of Genes | 78 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewVibaki_1 Vibaki_2 Vibaki_3 Vibaki_4 Vibaki_5 Vibaki_6 Vibaki_7 Vibaki_8 Vibaki_9 Vibaki_10 Vibaki_11 Vibaki_12 Vibaki_13 Vibaki_14 Vibaki_15 Vibaki_16 Vibaki_17 Vibaki_18 Vibaki_19 Vibaki_20 Vibaki_21 Vibaki_22 Vibaki_23 Vibaki_24 Vibaki_25 Vibaki_26 Vibaki_27 Vibaki_28 Vibaki_29 Vibaki_30 Vibaki_31 Vibaki_32 Vibaki_33 Vibaki_34 Vibaki_35 Vibaki_36 Vibaki_37 Vibaki_38 Vibaki_39 Vibaki_40 Vibaki_41 Vibaki_42 Vibaki_43 Vibaki_44 Vibaki_45 Vibaki_46 Vibaki_47 Vibaki_48 Vibaki_49 Vibaki_50 Vibaki_51 Vibaki_52 Vibaki_53 Vibaki_54 Vibaki_55 Vibaki_56 Vibaki_57 Vibaki_58 Vibaki_59 Vibaki_60 Vibaki_61 Vibaki_62 Vibaki_63 Vibaki_64 Vibaki_65 Vibaki_66 Vibaki_67 Vibaki_68 Vibaki_69 Vibaki_70 Vibaki_71 Vibaki_72 Vibaki_73 Vibaki_74 Vibaki_75 Vibaki_76 Vibaki_77 Vibaki_78 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MN096362 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 88 |
| Pitt Freezer Box Grid# | B4 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
