Gordonia phage Vordorf


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Detailed Information for Phage Vordorf | |
Discovery Information | |
Isolation Host | Gordonia rubripertincta NRRL B-16540 |
Found By | Jit Mukerji, Justin Brewer |
Year Found | 2021 |
Location Found | Charlestown, IN United States |
Finding Institution | Indiana University-Southeast |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 26°C |
GPS Coordinates | 38.46438 N, 85.667301 W Map |
Discovery Notes | Soil was acquired from backyard in Charlestown, IN. Soil was dark and moist and was clumpy. |
Naming Notes | We named it by combining the names of two different instruments that we used throughout our project. Our full name came from a vortex and a centrifuge called eppendorf. So combined it was vortex eppendorf but we shortened it to Vordorf. |
Sequencing Information | |
Sequencing Complete? | Yes |
Date Sequencing Completed | Apr 26, 2023 |
Sequencing Facility | NC State Genomic Sciences Laboratory |
Shotgun Sequencing Method | Illumina |
Sequencer Used | Illumina MiSeq |
Read Type | Single-end reads |
Read Length | 150 bp |
Approximate Shotgun Coverage | 4391 |
Genome length (bp) | 41646 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 9 bases |
Overhang Sequence | CGCGGGGGA |
GC Content | 67.7% |
Fasta file available? | Yes: Download fasta file |
Characterization | |
Cluster | DT |
Subcluster | -- |
Cluster Life Cycle | Unknown |
Other Cluster Members | |
Annotating Institution | Indiana University-Southeast |
Annotation Status | Being Annotated (Expected completion by 8/31/2025) |
Plaque Notes | Fairly round and cloudy. Size was consistent throughout.0.5 to 1 mm in size. |
Morphotype | Siphoviridae |
Number of Genes | 58 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List | |
Publication Info | |
Uploaded to GenBank? | No |
GenBank Accession | None yet |
Refseq Number | None yet |
Archiving Info | |
Archiving status | Archived |
Pitt Freezer Box# | 139 |
Pitt Freezer Box Grid# | F4 |