Gordonia phage Vordorf
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| Detailed Information for Phage Vordorf | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Jit Mukerji, Justin Brewer |
| Year Found | 2021 |
| Location Found | Charlestown, IN United States |
| Finding Institution | Indiana University-Southeast |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 26°C |
| GPS Coordinates | 38.46438 N, 85.667301 W Map |
| Discovery Notes | Soil was acquired from backyard in Charlestown, IN. Soil was dark and moist and was clumpy. |
| Naming Notes | We named it by combining the names of two different instruments that we used throughout our project. Our full name came from a vortex and a centrifuge called eppendorf. So combined it was vortex eppendorf but we shortened it to Vordorf. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Apr 26, 2023 |
| Sequencing Facility | NC State Genomic Sciences Laboratory |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 4391 |
| Genome length (bp) | 41646 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 9 bases |
| Overhang Sequence | CGCGGGGGA |
| GC Content | 67.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | DT |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members | |
| Annotating Institution | Indiana University-Southeast |
| Annotation Status | Being Annotated (Expected completion by 8/31/2025) |
| Plaque Notes | Fairly round and cloudy. Size was consistent throughout.0.5 to 1 mm in size. |
| Morphotype | Siphoviridae |
| Number of Genes | 58 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewVordorf_1 Vordorf_2 Vordorf_3 Vordorf_4 Vordorf_5 Vordorf_6 Vordorf_7 Vordorf_8 Vordorf_9 Vordorf_10 Vordorf_11 Vordorf_12 Vordorf_13 Vordorf_14 Vordorf_15 Vordorf_16 Vordorf_17 Vordorf_18 Vordorf_19 Vordorf_20 Vordorf_21 Vordorf_22 Vordorf_23 Vordorf_24 Vordorf_25 Vordorf_26 Vordorf_27 Vordorf_28 Vordorf_29 Vordorf_30 Vordorf_31 Vordorf_32 Vordorf_33 Vordorf_34 Vordorf_35 Vordorf_36 Vordorf_37 Vordorf_38 Vordorf_39 Vordorf_40 Vordorf_41 Vordorf_42 Vordorf_43 Vordorf_44 Vordorf_45 Vordorf_46 Vordorf_47 Vordorf_48 Vordorf_49 Vordorf_50 Vordorf_51 Vordorf_52 Vordorf_53 Vordorf_54 Vordorf_55 Vordorf_56 Vordorf_57 Vordorf_58 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 139 |
| Pitt Freezer Box Grid# | F4 |