Detailed Information for Phage Vordorf | |
Discovery Information | |
Isolation Host | Gordonia rubripertincta NRRL B-16540 |
Found By | Jit Mukerji, Justin Brewer |
Year Found | 2021 |
Location Found | Charlestown, IN United States |
Finding Institution | Indiana University-Southeast |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 26°C |
GPS Coordinates | 38.46438 N, 85.667301 W Map |
Discovery Notes | Soil was acquired from backyard in Charlestown, IN. Soil was dark and moist and was clumpy. |
Naming Notes | We named it by combining the names of two different instruments that we used throughout our project. Our full name came from a vortex and a centrifuge called eppendorf. So combined it was vortex eppendorf but we shortened it to Vordorf. |
Sequencing Information | |
Sequencing Complete? | Yes |
Date Sequencing Completed | Apr 26, 2023 |
Sequencing Facility | NC State Genomic Sciences Laboratory |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 4391 |
Genome length (bp) | 41646 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 9 bases |
Overhang Sequence | CGCGGGGGA |
GC Content | 67.7% |
Fasta file available? | Yes: Download fasta file |
Characterization | |
Cluster | DT |
Subcluster | -- |
Cluster Life Cycle | Unknown |
Other Cluster Members | |
Annotating Institution | Indiana University-Southeast |
Annotation Status | Being Annotated (Expected completion by 10/26/2024) |
Plaque Notes | Fairly round and cloudy. Size was consistent throughout.0.5 to 1 mm in size. |
Morphotype | Siphoviridae |
Has been Phamerated? | Yes |
Gene List |
Click to ViewVordorf_Draft_1 Vordorf_Draft_2 Vordorf_Draft_3 Vordorf_Draft_4 Vordorf_Draft_5 Vordorf_Draft_6 Vordorf_Draft_7 Vordorf_Draft_8 Vordorf_Draft_9 Vordorf_Draft_10 Vordorf_Draft_11 Vordorf_Draft_12 Vordorf_Draft_13 Vordorf_Draft_14 Vordorf_Draft_15 Vordorf_Draft_16 Vordorf_Draft_17 Vordorf_Draft_18 Vordorf_Draft_19 Vordorf_Draft_20 Vordorf_Draft_21 Vordorf_Draft_22 Vordorf_Draft_23 Vordorf_Draft_24 Vordorf_Draft_25 Vordorf_Draft_26 Vordorf_Draft_27 Vordorf_Draft_28 Vordorf_Draft_29 Vordorf_Draft_30 Vordorf_Draft_31 Vordorf_Draft_32 Vordorf_Draft_33 Vordorf_Draft_34 Vordorf_Draft_35 Vordorf_Draft_36 Vordorf_Draft_37 Vordorf_Draft_38 Vordorf_Draft_39 Vordorf_Draft_40 Vordorf_Draft_41 Vordorf_Draft_42 Vordorf_Draft_43 Vordorf_Draft_44 Vordorf_Draft_45 Vordorf_Draft_46 Vordorf_Draft_47 Vordorf_Draft_48 Vordorf_Draft_49 Vordorf_Draft_50 Vordorf_Draft_51 Vordorf_Draft_52 Vordorf_Draft_53 Vordorf_Draft_54 Vordorf_Draft_55 Vordorf_Draft_56 Vordorf_Draft_57 Vordorf_Draft_58 |
Publication Info | |
Uploaded to GenBank? | No |
GenBank Accession | None yet |
Refseq Number | None yet |
Archiving Info | |
Archiving status | Archived |
Pitt Freezer Box# | 139 |
Pitt Freezer Box Grid# | F4 |