Gordonia phage DelRio
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage DelRio
Discovery Information
Isolation HostGordonia terrae 3612
Found ByHaley Davis and Emme Edmondson
Year Found2017
Location FoundArkadelphia, AR United States
Finding InstitutionOuachita Baptist University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates34.1768 N, 93.0714 W Map
Discovery NotesWe found the phage near the bank of the Caddo River.
Naming NotesWe gathered the soil with the phage near a river, so we named the phage Rio, which is river in Spanish.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 6, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Genome length (bp)50961
Character of genome endsUnknown
Overhang Length10 bases
Overhang SequenceTGCCGCGGTA
GC Content67.0%
Sequencing NotesWas sequenced as a deliberately mixed sample along with SketchMex.
Fasta file available?Yes: Download fasta file
Characterization
ClusterDI
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesThe phage forms slightly cloudy plaques that measure 4 mm in diameter.
Has been Phamerated?Yes
Gene List

Click to View

DelRio_1
(HNH endonuclease)

DelRio_2

DelRio_3

DelRio_4

DelRio_5
(terminase small subunit)

DelRio_6
(terminase large subunit)

DelRio_7
(portal protein)

DelRio_8
(capsid maturation protease)

DelRio_9
(scaffolding protein)

DelRio_10
(major capsid protein)

DelRio_11

DelRio_12

DelRio_13
(head-to-tail connector complex protein)

DelRio_14
(head-to-tail connector complex protein)

DelRio_15
(head-to-tail connector complex protein)

DelRio_16

DelRio_17
(major tail protein)

DelRio_18

DelRio_19
(tail assembly chaperone)

DelRio_20
(tail assembly chaperone)

DelRio_21
(tape measure protein)

DelRio_22
(minor tail protein)

DelRio_23
(minor tail protein)

DelRio_24
(minor tail protein)

DelRio_25
(minor tail protein)

DelRio_26
(minor tail protein)

DelRio_27

DelRio_28

DelRio_29

DelRio_30
(lysin A, L-Ala-D-Glu peptidase domain)

DelRio_31
(lysin A, glycosyl hydrolase domain)

DelRio_32
(holin)

DelRio_33
(membrane protein)

DelRio_34

DelRio_35

DelRio_36

DelRio_37

DelRio_38

DelRio_39

DelRio_40
(integrase)

DelRio_41
(immunity repressor)

DelRio_42
(helix-turn-helix DNA binding domain protein)

DelRio_43
(helix-turn-helix DNA binding domain protein)

DelRio_44

DelRio_45

DelRio_46

DelRio_47

DelRio_48
(exonuclease)

DelRio_49

DelRio_50

DelRio_51

DelRio_52

DelRio_53

DelRio_54

DelRio_55

DelRio_56

DelRio_57

DelRio_58

DelRio_59

DelRio_60

DelRio_61

DelRio_62

DelRio_63

DelRio_64
(metallophosphoesterase)

DelRio_65

DelRio_66
(hydrolase)

DelRio_67
(methyltransferase)

DelRio_68

DelRio_69

DelRio_70
(DNA primase)

DelRio_71
(endonuclease VII)

DelRio_72

DelRio_73
(helix-turn-helix DNA binding domain protein)

DelRio_74
(HNH endonuclease)

DelRio_75

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH509446
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 4.5x10^8 pfu/mL
Pitt Freezer Box# 48
Pitt Freezer Box Grid# E11
Available Files
EM PictureDownload
GenBank File for PhameratorDownload