Phage List
Detailed Phage Information
Access detailed information about all phages, or about a particular phage (given its name).
GET /api/phages/?format=api&page=26
{ "count": 28923, "next": "https://phagesdb.org/api/phages/?format=api&page=27", "previous": "https://phagesdb.org/api/phages/?format=api&page=25", "results": [ { "phage_name": "Jordan02", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after founder", "finder_name": "Jordan Cibellis", "found_city": "Midlothian", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "37.48156 N", "found_GPS_long": "77.6594 W", "found_year": 2021, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": true, "discovery_notes": "- found from soil in plant bed\r\n- it had rained the night before, and it was collected the next morning in about 70 degrees F", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "- very small, clear plaques\r\n- varied sizes", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "sp.", "strain_name": "ISAT203", "strain_species": { "id": 85, "genus": "Microbacterium", "species_name": "sp.", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 85, "genus": "Microbacterium", "species_name": "sp.", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jordan02_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-26T13:25:49-04:00", "date_modified": "2024-02-25T15:28:17-05:00" }, { "phage_name": "Jordan1", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Christine V. Mayer", "found_city": "Raleigh", "found_state": "NC", "found_country": "USA", "found_GPS_lat": "35.782089 N", "found_GPS_long": "78.676939 W", "found_year": 2009, "p_institution": { "institution_code": "NCSU", "institution_name": "North Carolina State University", "institution_logo": "https://phagesdb.org/media/institutions/ncstate-logo.png", "institution_url": "http://www.ncsu.edu/", "institution_city": "Raleigh", "institution_state": "NC", "institution_country": "USA", "institution_latitude": "35.784920", "institution_longitude": "-78.68212" }, "enriched_sample": true, "discovery_notes": "Moist soil, found in close proximity to a large tree base, in a wooded area between to buildings", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Approx. 2 mm/ clear perfectly round plaques with defined edges/24 hours/37°C", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jordan1_Plague.jpg", "em_file": "https://phagesdb.org/media/emPics/Jordan1_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Jordan1_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jordan1_Plague_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Jordan1_EMPic_Thumb.png", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2020-06-30T16:51:41-04:00" }, { "phage_name": "Jordandy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of the phage was created from a fusing of my and my fiance's name, Andy. Jordan + Andy = Jordandy", "finder_name": "Jordan Jansen", "found_city": "Pound Ridge", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "NYAK", "institution_name": "Alliance University (formerly Nyack College)", "institution_logo": "https://phagesdb.org/media/institutions/AllianceUniversity.png", "institution_url": "https://allianceu.edu/", "institution_city": "New York", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Rhodococcus erythropolis NRRL\r\n\r\nDr. Washington collected the soil sample PR3E", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques have a bulls eye appearance, with a clear, small center circle surrounded by a larger, cloudier circle. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Rhodococcus", "species": "erythropolis", "strain_name": "Rery29", "strain_species": { "id": 9, "genus": "Rhodococcus", "species_name": "erythropolis", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 9, "genus": "Rhodococcus", "species_name": "erythropolis", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-12-16T20:34:16-05:00", "date_modified": "2020-09-17T14:09:27-04:00" }, { "phage_name": "JordanFarm", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name JordanFarm was chosen to commemorate the family and the farm-like qualities of the yard in which the phage was collected from.", "finder_name": "Jennifer Jordan", "found_city": "Tampa", "found_state": "FL", "found_country": "United States of America", "found_GPS_lat": "27.96334 N", "found_GPS_long": "82.42826 W", "found_year": 2020, "p_institution": { "institution_code": "HLSB", "institution_name": "Hillsborough Community College", "institution_logo": "https://phagesdb.org/media/institutions/HLSB.png", "institution_url": "https://www.hccfl.edu/", "institution_city": "Tampa", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "JordanFarm was found in the backyard of a home in Ybor city. The phage was collected from the dirt underneath a banana tree, where domestic chicken often scratch and feed from.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "EK", "temperate": null }, "psubcluster": { "subcluster": "EK2" }, "morphotype": "PODO", "plaque_notes": "The phage is 1mm in diameter, clear, and round. The phage appears either as small plaques that grow or as medium phages.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-12-18", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 316, "finishing_reactions": 0, "genome_length": 54520, "gcpercent": "60.1", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 57, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JordanFarm_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2024-02-18T22:14:40-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/JordanFarm.gbf", "qced_genbank_file_date": "2024-02-18T22:14:40-05:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PP405136", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JordanFarm_Plaque_rZOhpI3.JPG", "em_file": "https://phagesdb.org/media/emPics/JordanFarm_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/JordanFarm_Digest_V2J8sfC.JPG", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/JordanFarm.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JordanFarm_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/JordanFarm_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2020-11-18T13:56:31-05:00", "date_modified": "2025-09-13T06:41:37-04:00" }, { "phage_name": "Jordankenza", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name was derived from the two founders.", "finder_name": "Jordan Isaacs, Kenza Mdarhri-Alaoui", "found_city": "Northampton", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "SMTH", "institution_name": "Smith College", "institution_logo": "https://phagesdb.org/media/institutions/smith_logo200x122.jpg", "institution_url": "http://www.smith.edu/", "institution_city": "Northampton", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.318362", "institution_longitude": "-72.63729" }, "enriched_sample": null, "discovery_notes": "Found in a shaded area and taken from next to the side of a brick building. It was an area with a lot of roots present, and semi-damp soil.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-12-09T08:19:08-05:00", "date_modified": "2020-09-17T14:06:35-04:00" }, { "phage_name": "Jordennis", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This is my sister's nickname for me when I am not being as nice as I should be. ", "finder_name": "JorDonna Frazier", "found_city": "Upper Marlboro", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "38.818964", "found_GPS_long": "-76.750010", "found_year": 2015, "p_institution": { "institution_code": "LINC", "institution_name": "Lincoln University", "institution_logo": "https://phagesdb.org/media/institutions/LincolnLogo.jpg", "institution_url": "http://homepage.lincoln.edu/", "institution_city": "Lincoln University", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "39.808339", "institution_longitude": "-75.92744" }, "enriched_sample": null, "discovery_notes": "The soil was collected September 7, 2015. The soil was light and dry. It was top soil. It had not rained for a few days. It was 83 degrees Fahrenheit. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A6" }, "morphotype": "SIPHO", "plaque_notes": "The plaque is polymorphic. The plaques varies between large and small. They resemble a bulls-eye,meaning clear in the center and cloudy around the center.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-01-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2238, "finishing_reactions": 0, "genome_length": 52234, "gcpercent": "61.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTCGGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 96, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Jordennis_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Jordennis_Minimal_Final_Tgd0Qyi.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Jordennis_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Jordennis_CoverSheet.pdf", "submitted_annotation_date": "2019-02-03T19:04:59-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Jordennis_final_flat.txt", "qced_genbank_file_date": "2019-02-03T19:04:59-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK494090", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jordennis_Plaque.JPG", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Jordennis_Digest.PNG", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Jordennis.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jordennis_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2015-12-01T16:39:39-05:00", "date_modified": "2025-09-13T06:41:37-04:00" }, { "phage_name": "Jordi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Jordi is a dear friend we wanted to dedicate the phage to in honor of our friendship and appreciation for his hardwork and big heart.", "finder_name": "Maggie Larson, Jackson Ferber", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.66663 N", "found_GPS_long": "117.4 W", "found_year": 2022, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "This phage was found in moist soil in a partly shady grassy flat area. It was a sunny day on 8/30/22. We took some soil from the surface as well as digging into the soil where it was more moist and collected a few blades of grass and other organic material within the soil.", "isolation_temperature": 22, "growth_notes": "", "pcluster": { "cluster": "EK", "temperate": null }, "psubcluster": null, "morphotype": "", "plaque_notes": "Our plaques average diameter is 2.1 mm with a faint halo around the edges. They appear to be very circular plaques with clear edges.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jordi_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jordi_Plaque_Thumb.jpeg", "em_thumb_file": "https://phagesdb.org/media/emPics/Jordi_TEM_thumb.png", "dnam_file": null, "date_added": "2022-11-09T08:55:22-05:00", "date_modified": "2024-02-25T15:28:09-05:00" }, { "phage_name": "JordiJ", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "JordiJ is named after Darragh Graham's son.", "finder_name": "Mika Nevo", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.00939 N", "found_GPS_long": "105.270509 W", "found_year": 2021, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "The bacteria was isolated near the bike path by the rec center, near the pine trees by potted plants. It was collected at 4pm on February 1st, 2021.", "isolation_temperature": 7, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques were clear, meaning they were lytic phages. The high titer lysate is 1.07*10^8 pfu/ml.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JordiJ_Plaque.pdf", "em_file": "https://phagesdb.org/media/emPics/JordiJ_EMPic.pdf", "digest_file": "https://phagesdb.org/media/digestPics/JordiJ_Digest.jpeg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-04-28T11:10:41-04:00", "date_modified": "2022-03-16T11:02:21-04:00" }, { "phage_name": "JordimusV", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jordahn Edwards", "found_city": "atlanta", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "33.74722 N", "found_GPS_long": "84.41472 W", "found_year": 2017, "p_institution": { "institution_code": "MORE", "institution_name": "Morehouse College", "institution_logo": "https://phagesdb.org/media/institutions/Morehouse_Logo.jpg", "institution_url": "http://www.morehouse.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.746175", "institution_longitude": "-84.41438" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-12T21:00:07-05:00", "date_modified": "2020-09-17T14:08:01-04:00" }, { "phage_name": "Jordina", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name originated from the two people who found and isolated this phage. It was a combination of both their names, Jordan and Gina. Thus Jordina the phage was born.", "finder_name": "", "found_city": "fort collins", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.008899 N", "found_GPS_long": "105.269539 W", "found_year": 2022, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "Found outside in a flower bed. Soil was muddy and mixed with mulch.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jordina_Plaque_F6di8aF.jpg", "em_file": "https://phagesdb.org/media/emPics/Jordina_EMPic_WJLPE5i.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Jordina_Digest_nPcyRTt.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-14T08:39:22-05:00", "date_modified": "2024-02-25T15:27:58-05:00" }, { "phage_name": "JordyBoss", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Nickname for a group member's dog.", "finder_name": "Fia Jastrzebska Sam Song Rossy Qui Ramatou Alawiya", "found_city": "Amherst", "found_state": "MA", "found_country": "United States of America", "found_GPS_lat": "42.391246 N", "found_GPS_long": "72.523595 W", "found_year": 2025, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "The sample was collected from a patch of moist dirt next to a sidewalk.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Turbid, 1mm in size.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-04-02T09:28:29-04:00", "date_modified": "2025-04-07T13:13:16-04:00" }, { "phage_name": "Jordyn1999", "old_names": "JordynBritton", "program": null, "naming_notes": "", "finder_name": "Jordyn Britton", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.9177 N", "found_GPS_long": "77.012 W", "found_year": 2017, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-01T16:26:38-04:00", "date_modified": "2020-09-17T14:08:21-04:00" }, { "phage_name": "JoreskiHCFM", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the man who instilled a passion for biology in me and an antonym sure to make him mad. C'mon Eric.\r\nHumans\r\nCame\r\nFrom\r\nMonkeys", "finder_name": "Brendan Radel", "found_city": "Oxford", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "39.512778 N", "found_GPS_long": "84.73 W", "found_year": 2012, "p_institution": { "institution_code": "MUOH", "institution_name": "Miami University", "institution_logo": "https://phagesdb.org/media/institutions/miami-university-logo.gif", "institution_url": "http://www.miami.muohio.edu/", "institution_city": "Oxford", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "39.510802", "institution_longitude": "-84.73085" }, "enriched_sample": false, "discovery_notes": "third time seems to be the charm. found in a shaded area on 9/10/12. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "clear plaques approximately 2mm in diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JoreskiHCFM_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/JoreskiHCFM_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JoreskiHCFM_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/JoreskiHCFM_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2012-10-31T08:44:30-04:00", "date_modified": "2020-06-30T16:47:41-04:00" }, { "phage_name": "Jorey", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Means \"God will uplift\"", "finder_name": "Jeannette C. Myrick", "found_city": "Tampa", "found_state": "FL", "found_country": "USA", "found_GPS_lat": "28.061389 N", "found_GPS_long": "82.4075 W", "found_year": 2017, "p_institution": { "institution_code": "USFL", "institution_name": "University of South Florida", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofSouthFlorida.jpg", "institution_url": "http://www.usf.edu/", "institution_city": "Tampa", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "28.058438", "institution_longitude": "-82.41395" }, "enriched_sample": false, "discovery_notes": "The soil containing the phage was collected from a cavity in the bole of a tree. The sapwood was contained a foul mass of fungi and bacteria. The tree was near the C.W. Bill Young Hall building on the University of South Florida campus. \r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Large, circular, clear plaques. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jorey_Plaque_wIDXFm8.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jorey_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-01T08:25:03-04:00", "date_modified": "2020-09-17T14:08:05-04:00" }, { "phage_name": "Jorge", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Hannah Tegtmeyer", "found_city": "Holland", "found_state": "MI", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2018, "p_institution": { "institution_code": "HOPE", "institution_name": "Hope College", "institution_logo": "https://phagesdb.org/media/institutions/Hope.jpg", "institution_url": "http://www.hope.edu/", "institution_city": "Holland", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.788980", "institution_longitude": "-86.10404" }, "enriched_sample": true, "discovery_notes": "Garden soil", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "clear, defined edges and centers", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jorge_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Jorge_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jorge_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-30T20:49:14-05:00", "date_modified": "2023-03-05T22:36:52-05:00" }, { "phage_name": "JorgeGarces", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The man who inspired me to pursue science.", "finder_name": "Alejandro Garces", "found_city": "Ellicott City", "found_state": "MD", "found_country": "", "found_GPS_lat": "39.2542 N", "found_GPS_long": "76.8431 W", "found_year": 2017, "p_institution": { "institution_code": "CAMU", "institution_name": "Carnegie Mellon University", "institution_logo": "https://phagesdb.org/media/institutions/Burgundy_CMU_JPG_Logo.jpg", "institution_url": "http://www.cmu.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.442741", "institution_longitude": "-79.94255" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 25, "growth_notes": "", "pcluster": { "cluster": "AK", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Creates large sized, clear plaques across host-enriched agar lawn.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JorgeGarces_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/JorgeGarces_EMPic.pptx", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JorgeGarces_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Jorgegarces_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-10-13T22:05:37-04:00", "date_modified": "2020-09-17T14:08:13-04:00" }, { "phage_name": "Jorgensen", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Dan Williams", "found_city": "Conway", "found_state": "SC", "found_country": "USA", "found_GPS_lat": "33.797828 N", "found_GPS_long": "79.012733 W", "found_year": 2019, "p_institution": { "institution_code": "COCA", "institution_name": "Coastal Carolina University", "institution_logo": "https://phagesdb.org/media/institutions/CoastalCarolinaUniversity.png", "institution_url": "http://www.coastal.edu/", "institution_city": "Conway", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "33.795617", "institution_longitude": "-79.01207" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-01-13", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 586, "finishing_reactions": 0, "genome_length": 53771, "gcpercent": "63.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGATGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 102, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Jorgensen_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2020-07-08T14:26:14-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Jorgensen_flat.txt", "qced_genbank_file_date": "2020-07-08T14:26:14-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MT771340", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Jorgensen.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-21T13:14:10-05:00", "date_modified": "2025-09-13T06:41:37-04:00" }, { "phage_name": "Jorianna", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named for the two students who found and isolated the phage.", "finder_name": "Gianna Gaeta and Jordan Lavoie", "found_city": "North Andover", "found_state": "MA", "found_country": "United States of America", "found_GPS_lat": "42.66778 N", "found_GPS_long": "71.12162 W", "found_year": 2023, "p_institution": { "institution_code": "MERI", "institution_name": "Merrimack College", "institution_logo": "https://phagesdb.org/media/institutions/14169_mc_centered_rgb.png", "institution_url": "http://www.merrimack.edu/", "institution_city": "North Andover", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.667953", "institution_longitude": "-71.12257" }, "enriched_sample": true, "discovery_notes": "The sample was properly collected at gps coordinates 42.66778°N, 71.12162°W. Initially, the area above the sampling point was excavated by a person using a glove in hopes of avoiding contamination. After digging about four inches below ground level, the sample was collected and stored in a sterile tube, which was then sealed inside a plastic ziploc bag. In order to ensure\r\nproper and accurate results, initials JL and GG were written on the bag, along with the date and time in which the sample was collected, which was 9/18/23 at around 3pm. On this date, the\r\ntemperature was mid 60s, with consistent precipitation throughout the whole day. Additionally, the soil was extremely damp at the time of collection due to the environmental conditions. The\r\ndew point averaged 62.4 degrees fahrenheit, and the max wind speed was 8mph. Although the dew point doesn’t directly affect the soil itself, it promotes environmental conditions in which various fungus and other microbiological processes are able to thrive.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "After the preparation of generation two plaque assays were completed, the results were analyzed. In this generation there was a total of the plaques present, as the 10-3 plate yielded three plaques and the 10-1 and 10-5 plaques yielded zero plaques. The largest plaque, which was around 0.3cm\r\nin diameter, was used for observation. Although the plates were not completely heterogenous, the plaques showed more similarities in this generation than they did in generation one. All of\r\nthe plaques were similar in size, and they all had a cloudy appearance with cloudy edges. These results were somewhat surprising, as the plaques were only present in the 10-3 dilution. On the other hand, the increasing similarities between the plaques were expected and desirable.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jorianna_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-14T15:21:45-05:00", "date_modified": "2024-02-25T15:28:30-05:00" }, { "phage_name": "Joric", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Daniel Mintz", "found_city": "", "found_state": "", "found_country": "", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2021, "p_institution": { "institution_code": "MORE", "institution_name": "Morehouse College", "institution_logo": "https://phagesdb.org/media/institutions/Morehouse_Logo.jpg", "institution_url": "http://www.morehouse.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.746175", "institution_longitude": "-84.41438" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-12-14T09:42:25-05:00", "date_modified": "2021-12-14T09:42:25-05:00" }, { "phage_name": "Joric32", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jordan Long", "found_city": "Snellville", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "41.2 N", "found_GPS_long": "9.05 W", "found_year": 2013, "p_institution": { "institution_code": "GGWC", "institution_name": "Georgia Gwinnett College", "institution_logo": "https://phagesdb.org/media/institutions/GAGW_BRAND_01.jpg", "institution_url": "http://www.ggc.edu/", "institution_city": "Lawrenceville", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.980655", "institution_longitude": "-84.00226" }, "enriched_sample": true, "discovery_notes": "Found under a tree in a shaded area that gets al ittle sunglight. A sandy area that has a mixture of dirt as well. Obtained dirt sample on 8/26/13 on a 63 degree morning. 3 inches down in mixture.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "3 mm Lysogenic plaques with about 200 plaques on each plate.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-12-11T15:01:06-05:00", "date_modified": "2020-09-17T14:05:23-04:00" }, { "phage_name": "JorisIII7", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "named it after my last name. the III was because I am a junior and its like my kid and the 7 was the day I was born in may", "finder_name": "Chris Joris", "found_city": "Grayson", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2014, "p_institution": { "institution_code": "GGWC", "institution_name": "Georgia Gwinnett College", "institution_logo": "https://phagesdb.org/media/institutions/GAGW_BRAND_01.jpg", "institution_url": "http://www.ggc.edu/", "institution_city": "Lawrenceville", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.980655", "institution_longitude": "-84.00226" }, "enriched_sample": true, "discovery_notes": "found outside my house by the walk way next to my garage. it was about a half a foot deep and was partly cloudy and was 25 degrees", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "was clear and was 1 mm", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JorisIII7_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JorisIII7_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2014-05-06T14:59:15-04:00", "date_modified": "2020-09-17T14:05:39-04:00" }, { "phage_name": "Jorma", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Hannah Marie Berry", "found_city": "Raleigh", "found_state": "NC", "found_country": "USA", "found_GPS_lat": "35.782158 N", "found_GPS_long": "78.666163 W", "found_year": 2010, "p_institution": { "institution_code": "NCSU", "institution_name": "North Carolina State University", "institution_logo": "https://phagesdb.org/media/institutions/ncstate-logo.png", "institution_url": "http://www.ncsu.edu/", "institution_city": "Raleigh", "institution_state": "NC", "institution_country": "USA", "institution_latitude": "35.784920", "institution_longitude": "-78.68212" }, "enriched_sample": true, "discovery_notes": "High clay content, some sand. Collected about 3 inches below the surface under a thick layer of mulch next to a compost pile. Outside temperature was about 65°F, low humidity, slight breeze, no rain previous to the collection. The soil was slightly moist.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques range in size from 2cm to 4cm in diameter, on average 3cm. All plaques are very clear and are consistent in size. The plaques indicate a turbid life cycle of the phage.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jorma_Plaque.bmp", "em_file": "https://phagesdb.org/media/emPics/Jorma_EM.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jorma_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Jorma_EM_Thumb.jpg", "dnam_file": null, "date_added": "2010-11-08T19:00:00-05:00", "date_modified": "2017-09-22T12:31:44-04:00" }, { "phage_name": "Jormungandr", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "In Norse mythology, Jörmungandr is a sea serpent, the middle child of the giantess Angrboða and Loki. The serpent grew so large that it was able to surround the earth and grasp its own tail. When it releases its tail, Ragnarök will begin. ", "finder_name": "Connor Haszto", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.44 N", "found_GPS_long": "79.95 W", "found_year": 2016, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "The sample was collected on the Cathedral of Learning lawn. The surrounding area supported grass and plant growth but the sample was collected in a dry patch of dirt. The dirt was very dry and compact. \r\n\r\n", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "CS", "temperate": false }, "psubcluster": { "subcluster": "CS3" }, "morphotype": "SIPHO", "plaque_notes": "The plaques are very small but numerous.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-02-09", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 311, "finishing_reactions": 0, "genome_length": 73380, "gcpercent": "58.9", "end_type": "TREP", "repeat_length": 184, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 91, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Jormungandr_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-01-31T09:36:10-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Jormungandr_flat.txt", "qced_genbank_file_date": "2019-01-31T09:36:10-05:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK494106", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jormungandr_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Jormungandr_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Jormungandr_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Jormungandr.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jormungandr_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Jormungandr_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-10-06T11:34:50-04:00", "date_modified": "2025-09-13T06:41:37-04:00" }, { "phage_name": "JorRay", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jordan Ray", "found_city": "Atlanta", "found_state": "GA", "found_country": "United States", "found_GPS_lat": "33.75 N", "found_GPS_long": "84.41 W", "found_year": 2019, "p_institution": { "institution_code": "MORE", "institution_name": "Morehouse College", "institution_logo": "https://phagesdb.org/media/institutions/Morehouse_Logo.jpg", "institution_url": "http://www.morehouse.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.746175", "institution_longitude": "-84.41438" }, "enriched_sample": true, "discovery_notes": "Soil sample collected on east side of Trevor Arnett Hall at the promenade on the south end of the Clark Atlanta University campus.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "G", "temperate": true }, "psubcluster": { "subcluster": "G1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-02-24", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 43, "finishing_reactions": 0, "genome_length": 41901, "gcpercent": "66.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CCCCATGGCAT", "sequencing_notes": "This phage was sequenced as part of a DOGEMS sample.", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 64, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JorRay_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JorRay_Minimal_Final_vPEQYFI.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/JorRay_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/JorRay_CoverSheet.docx", "submitted_annotation_date": "2022-05-24T21:07:30-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/JorRay_flat_4cxfA4v.txt", "qced_genbank_file_date": "2022-05-24T21:07:30-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "ON637765", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/JorRay.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-12-18T15:44:08-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Jose", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name \"Jose\" was chosen because\r\neveryone else was choosing a strange and unique name and so I decided to give it a normal name to counteract this movement.", "finder_name": "Zulfiqar Ali", "found_city": "Hanover Park", "found_state": "IL", "found_country": "United States", "found_GPS_lat": "41.973708 N", "found_GPS_long": "88.153144 W", "found_year": 2023, "p_institution": { "institution_code": "BENU", "institution_name": "Benedictine University", "institution_logo": "https://phagesdb.org/media/institutions/PrimaryPNG-red-bl.png", "institution_url": "http://www.ben.edu/", "institution_city": "Lisle", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Soil was with some wood chips and near a growing tree in a park near my house. Weather was moist in the early morning after a rain with a cloudy sky. A large amount was gathered but a lot of it was full of wood chips which is unusable.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The phage \"Jose\" is Lysogenic with a cloudy center and edge. The diameter was approximately 0.5mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "atrocyaneus", "strain_name": "NRRL B-2883", "strain_species": { "id": 61, "genus": "Arthrobacter", "species_name": "atrocyaneus", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 61, "genus": "Arthrobacter", "species_name": "atrocyaneus", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jose_Plaque.pdf", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-28T09:02:54-05:00", "date_modified": "2025-07-11T12:34:15-04:00" }, { "phage_name": "Joselito", "old_names": "MEJI36", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ray Arno", "found_city": "Orangeburg", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "41.0528 N", "found_GPS_long": "73.9501 W", "found_year": 2016, "p_institution": { "institution_code": "DCBL", "institution_name": "Dominican University New York", "institution_logo": "https://phagesdb.org/media/institutions/CV_DU_stacked_2022.png", "institution_url": "https://www.duny.edu/", "institution_city": "Orangeburg", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.039643", "institution_longitude": "-73.94976" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A11" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-02-20", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 92, "finishing_reactions": 0, "genome_length": 52347, "gcpercent": "63.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTCGGTTA", "sequencing_notes": "This genome was sequenced as part of a DOGEMS sample.", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 97, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Joselito_CompleteNotes_UaSTnHZ.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Joselito_Minimal_Final_Jv87AAg.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Joselito_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Joselito_CoverSheet.pdf", "submitted_annotation_date": "2018-05-10T14:49:23-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Joselito.gbf", "qced_genbank_file_date": "2018-05-10T14:49:23-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH338237", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Joselito_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Joselito_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Joselito.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Joselito_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Joselito_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-10-24T18:07:56-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Josem24", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of the phage is given by abbreviation of the name of the person who discovered it. It also presents the number in wich said person has his birthday.", "finder_name": "Josefina Micheloni", "found_city": "Rosario,Santa Fe", "found_state": "", "found_country": "Argentina", "found_GPS_lat": "32.926996 N", "found_GPS_long": "60.658233 W", "found_year": 2022, "p_institution": { "institution_code": "UNDR", "institution_name": "Universidad Nacional de Rosario", "institution_logo": "https://phagesdb.org/media/institutions/UNR-escudo-1.jpg", "institution_url": "http://www.unr.edu.ar/english/", "institution_city": "Rosario", "institution_state": "", "institution_country": "Argentina", "institution_latitude": "32.950301 S", "institution_longitude": "60.635893 W" }, "enriched_sample": true, "discovery_notes": "The sample was obtained in the vicinity of a building. This sample was of soil with remains of grass and leaves. This sample is characterized by coming from humiferous soil, that is, it was rich in organic matter.", "isolation_temperature": 18, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The lysis plaque is characterized by having a mediun size (approx 2mm). It does not present consistent morphology, which is an intrinsic characteristic of the phage. It is characterized by being a turbid plaque of lysis and by presenting a halo.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Josem24_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Josem24_EMPic.jpeg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-01-04T09:43:36-05:00", "date_modified": "2023-01-04T09:43:36-05:00" }, { "phage_name": "Joseph", "old_names": "Joe", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Maya Hutson", "found_city": "Radnor", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.054806 N", "found_GPS_long": "75.375653 W", "found_year": 2009, "p_institution": { "institution_code": "CABR", "institution_name": "Cabrini University", "institution_logo": "https://phagesdb.org/media/institutions/Cabrini-01.jpg", "institution_url": "http://www.cabrini.edu/", "institution_city": "Radnor", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.055648", "institution_longitude": "-75.37448" }, "enriched_sample": false, "discovery_notes": "Soil near the base of an oak tree", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Medium sized clear lytic plaques that grow at 37 degrees Celsius for 24 hours", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Joseph_Plague.jpg", "em_file": "https://phagesdb.org/media/emPics/Joseph_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Joseph_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Joseph_Plague_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Joseph_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2017-09-22T12:31:44-04:00" }, { "phage_name": "Josephina", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Angelina Natalie", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "79.954961 N", "found_GPS_long": "40.444531 W", "found_year": 2018, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-11T10:52:23-04:00", "date_modified": "2020-09-17T14:10:32-04:00" }, { "phage_name": "Josephine", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after Napoleon Bonaparte's second wife Josephine. I also isolated a phage named NapoleonDz! ", "finder_name": "Adrienne Dzurick ", "found_city": "Bethlehem ", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.615037 N", "found_GPS_long": "75.366219 E", "found_year": 2016, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": true, "discovery_notes": "Found at the bottom of a staircase at the Steel Stacks in Bethlehem, PA. This is the site of the historical Bethlehem Steel. ", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B1" }, "morphotype": "SIPHO", "plaque_notes": "Pinpoint plaques- 1mm- turbid show after 24 hour incubation at 37 degrees. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Josephine_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Josephine_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Josephine_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Josephine_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-06-17T13:32:57-04:00", "date_modified": "2020-09-17T14:08:14-04:00" }, { "phage_name": "JosephJoestar", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ian Collamer", "found_city": "Oxford", "found_state": "OH", "found_country": "United States", "found_GPS_lat": "39.51565 N", "found_GPS_long": "84.7318 W", "found_year": 2022, "p_institution": { "institution_code": "MUOH", "institution_name": "Miami University", "institution_logo": "https://phagesdb.org/media/institutions/miami-university-logo.gif", "institution_url": "http://www.miami.muohio.edu/", "institution_city": "Oxford", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "39.510802", "institution_longitude": "-84.73085" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "E", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JosephJoestar_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-10-31T12:23:28-04:00", "date_modified": "2024-02-25T15:28:03-05:00" }, { "phage_name": "Josephus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named it after myself Joseph.", "finder_name": "Joseph Kitsutkin", "found_city": "Oak Brook", "found_state": "IL", "found_country": "United States of America", "found_GPS_lat": "41.836067 N", "found_GPS_long": "87.990294 W", "found_year": 2024, "p_institution": { "institution_code": "BENU", "institution_name": "Benedictine University", "institution_logo": "https://phagesdb.org/media/institutions/PrimaryPNG-red-bl.png", "institution_url": "http://www.ben.edu/", "institution_city": "Lisle", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "I extracted my soil sample from about 2 or 3 inches under the top layer of the initial soil and took maybe a pound or so of soil. The soil was very dusty, almost like sand, but it was still dirt. The soil sample contained a couple of small rocks, some roots, and some wood chips/twigs/bark.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The size ranges from 0.7mm to 0.8mm and it is a lytic phage with a clear edge and clear center. The PFU/mL was 5.5 x 10⁹.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-06T13:53:41-05:00", "date_modified": "2025-07-11T12:34:16-04:00" }, { "phage_name": "JoseRizal", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of the soil is Jose Rizal. Jose Rizal is a National Hero came from Philippines. Jose is a Spanish term of \"Mercado\" which means is market in English and Rizal from the word \"Racial\" in Spanish means a field where wheat, cut while still green, sprouts again.", "finder_name": "jean mesadieu/Ramadhan Nsengiyumva", "found_city": "Roanoke", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2018, "p_institution": { "institution_code": "VAWE", "institution_name": "Virginia Western Community College", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaWesternCommunityCollege.png", "institution_url": "http://www.virginiawestern.edu/", "institution_city": "W. Roanoke", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.246257", "institution_longitude": "-79.97377" }, "enriched_sample": true, "discovery_notes": "the soil was collected in the Franklin Building of Virginia Western Community College. It was a peaty like soil", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-10T15:37:15-04:00", "date_modified": "2020-09-17T14:10:00-04:00" }, { "phage_name": "JosetteG5", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Josette Guthrie", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2014, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-11-28T16:35:10-05:00", "date_modified": "2015-04-29T14:32:33-04:00" }, { "phage_name": "Josh", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name Josh comes from the best TV show in the world: Drake&Josh", "finder_name": "Sophia Rubero and Caelin Lasley", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.732426 N", "found_GPS_long": "117.166494 W", "found_year": 2019, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "The soil sample was collected on February 20, 2019 776 m above sea level. The soil was dug around 13 cm deep on a 22 degree Celsius day and the sample was crumbly yet moist with decomposing leaves dispersed throughout.", "isolation_temperature": 32, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are very small but covers the entire the entire plate and with clear edges when isolated. The plaques tend to grow into each other, creating larger and uneven plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Josh_Plaque_DByM45K.JPG", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Josh_Digest_zMxKP6H.JPG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Josh_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-04-08T09:53:42-04:00", "date_modified": "2020-07-20T16:32:36-04:00" }, { "phage_name": "Josh12104", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Roommate", "finder_name": "Andrew Zhao", "found_city": "Hummelstown", "found_state": "PA", "found_country": "United States of America", "found_GPS_lat": "40.253574 N", "found_GPS_long": "76.676094 W", "found_year": 2022, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": false, "discovery_notes": "Sample was collected from a garden at around 70 degrees Fahrenheit", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Medium sized and clear plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-12-09T09:45:31-05:00", "date_modified": "2022-12-09T09:45:31-05:00" }, { "phage_name": "Josh15", "old_names": "JDR1063", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Josh - My first name\r\n15 - random number", "finder_name": "Joshua Reynolds", "found_city": "Manchester", "found_state": "NH", "found_country": "United States", "found_GPS_lat": "42.94774 N", "found_GPS_long": "71.384205 W", "found_year": 2019, "p_institution": { "institution_code": "UNHM", "institution_name": "University of New Hampshire at Manchester", "institution_logo": "https://phagesdb.org/media/institutions/unh_manchester.png", "institution_url": "", "institution_city": "Manchester", "institution_state": "NH", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Discovered in classmate’s garden by a tomato plant.", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "Clear center with a cloudy outer edge. Approxiamtely 3-4 millimeters in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Josh15_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Josh15_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Josh15_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-13T11:12:31-04:00", "date_modified": "2021-01-28T11:04:01-05:00" }, { "phage_name": "Joshby", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "As lab partners, we combined our names.", "finder_name": "Darby O'Brien and Josh Johnson", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.7252 N", "found_GPS_long": "117.163 E", "found_year": 2017, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "The phage was collected on February 22 2017. It was approximately 35 degrees F. The depth that the sample was collected from was approximately 1 inch, from very moist soil. There was low foot traffic from this site, near a basketball court, and near muddy puddles.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "approximately .5 mm. Clustered very close to each other. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-05-01T09:33:09-04:00", "date_modified": "2020-09-17T14:08:56-04:00" }, { "phage_name": "Joshi", "old_names": "Joshipoo", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after Josh Hutcherson, specifically the \"Whistle\" edit.", "finder_name": "Katie Suhm and Natalie Sievers", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.666387 N", "found_GPS_long": "117.404641 W", "found_year": 2024, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": -22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Joshi_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Joshi_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/IMG_5676.jpeg", "em_thumb_file": "https://phagesdb.org/media/emPics/IMG_5679.jpeg", "dnam_file": null, "date_added": "2024-03-12T10:07:12-04:00", "date_modified": "2025-08-01T10:53:35-04:00" }, { "phage_name": "Joshi10", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Parixit Bharat Joshi", "found_city": "Metairie", "found_state": "LA", "found_country": "USA", "found_GPS_lat": "30.00429 N", "found_GPS_long": "90.11083 W", "found_year": 2011, "p_institution": { "institution_code": "XAVU", "institution_name": "Xavier University of Louisiana", "institution_logo": "https://phagesdb.org/media/institutions/Xavier-University-of-Louisiana.jpg", "institution_url": "http://www.xula.edu/", "institution_city": "New Orleans", "institution_state": "LA", "institution_country": "USA", "institution_latitude": "29.964843", "institution_longitude": "-90.10674" }, "enriched_sample": true, "discovery_notes": "Dry Garden Soil\nAbout 3 cm deep\nHumid atmosphere,temperature around 30 degrees Celsius, urban area, moderate foot traffic. Time of collections: 6:00pm ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "turbid plaques, not completely clear,a temperate phage, showing a ratio of 2 big to 1 small plaque. Size is in between 0.5mm to 3mm in diameter. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2011-11-22T06:58:33-05:00", "date_modified": "2017-09-12T10:21:56-04:00" }, { "phage_name": "JoshiMcClain", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Neil Joshi and Caden McClain", "found_city": "Durham", "found_state": "NC", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2023, "p_institution": { "institution_code": "DTCC", "institution_name": "Durham Technical Community College", "institution_logo": "https://phagesdb.org/media/institutions/DurhamTechLogo.png", "institution_url": "http://www.durhamtech.edu/", "institution_city": "Durham", "institution_state": "NC", "institution_country": "United States", "institution_latitude": "35.975438", "institution_longitude": "-78.88074" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-20T13:59:51-05:00", "date_modified": "2024-02-25T15:28:22-05:00" }, { "phage_name": "JoshKayV", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "Named after 2 children, son Joshua and daughter Kayleigh", "finder_name": "Veneesha Thaver", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "29.0 S", "found_GPS_long": "30.0 E", "found_year": 2016, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A2" }, "morphotype": "SIPHO", "plaque_notes": "garden outside the Microbiology lab at University of Durban Westville", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-05-11", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2850, "finishing_reactions": 0, "genome_length": 53366, "gcpercent": "63.0", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTCGGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 97, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/JoshKayV.gbf", "qced_genbank_file_date": "2017-07-14T09:24:59-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MF472896", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/JoshKayV.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/JoshKayV.dnam5", "date_added": "2016-07-14T09:30:52-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "JoshKoshBgosh", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This whimsical name was suggested by my friend who combined my first name with the name of a large American clothing company founded in Oshkosh, Wisconsin.", "finder_name": "Josh Wang", "found_city": "Sainte-Anne-de-Bellevue", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.402947 N", "found_GPS_long": "73.939751 W", "found_year": 2024, "p_institution": { "institution_code": "MCGL", "institution_name": "McGill University", "institution_logo": "https://phagesdb.org/media/institutions/mcgill2.jpg", "institution_url": "https://www.mcgill.ca/", "institution_city": "Montreal", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "This phage was isolated from enriched river water. For enriched isolation, ~40 ml of water was collected from the St. Lawrence River, specifically Lake St. Louis. The river was greenish brown and had some moss and foam. On the day of sample collection, it was 20 C, sunny and windy with 62% humidity and a 4 on the UV index. The water sample itself contained a few small pieces of organic debris such as grass and twigs.", "isolation_temperature": 20, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "Plaques were small (1-2 mm in diameter), circular, and clear with well-defined margins.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JoshKoshBgosh_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/JoshKoshBgosh_EMPic.tiff", "digest_file": "https://phagesdb.org/media/digestPics/JoshKoshBgosh_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JoshKoshBgosh_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/JoshKoshBgosh_EMPic_Thumb.png", "dnam_file": null, "date_added": "2024-11-25T11:16:46-05:00", "date_modified": "2025-04-04T11:37:27-04:00" }, { "phage_name": "Joshliz", "old_names": "", "program": null, "naming_notes": "", "finder_name": "Joemark Narsico", "found_city": "Hualien", "found_state": "", "found_country": "Taiwan", "found_GPS_lat": "23.935278 N", "found_GPS_long": "121.510556 E", "found_year": 2022, "p_institution": { "institution_code": "SINI", "institution_name": "Academia Sinica", "institution_logo": "https://phagesdb.org/media/institutions/Academia_Sinica.png", "institution_url": "https://www.sinica.edu.tw/en", "institution_city": "Taipei", "institution_state": "", "institution_country": "Taiwan", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 25, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B4" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "BRCTaiwan", "facility_name": "Biodiversity Research Center at Academia Sinica, Taiwan", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Joshliz_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-04-24T11:05:40-04:00", "date_modified": "2024-04-24T11:05:40-04:00" }, { "phage_name": "JoshuaJC", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "JoshuaJC is named after a very special person names Joshua Cannon. He's a pretty awesome person just like this phage.", "finder_name": "Megan Ulbrich", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.444253 N", "found_GPS_long": "79.953229 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Soil was swampy algae.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are turbid and range in size from pinpoint to 1mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JoshuaJC_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/JoshuaJC_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JoshuaJC_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/JoshuaJC.jpg", "dnam_file": null, "date_added": "2017-06-30T19:42:26-04:00", "date_modified": "2019-09-10T16:34:28-04:00" }, { "phage_name": "Josiah", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Joe", "found_city": "Bethlehem", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2016, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-07-14T09:30:59-04:00", "date_modified": "2020-09-17T14:08:14-04:00" }, { "phage_name": "Josie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named it a girl name because the soil sample was taken next to a flower", "finder_name": "Tyler Pettigrew & Nish Eluri", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.958694 N", "found_GPS_long": "75.189889 W", "found_year": 2015, "p_institution": { "institution_code": "DRXL", "institution_name": "Drexel University", "institution_logo": "https://phagesdb.org/media/institutions/logo-drexel.jpg", "institution_url": "http://drexel.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Near flower\r\nMoist soil\r\nCollected at night(8:32PM)", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Moderate aggressiveness and growth rate\r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-01-05T10:52:57-05:00", "date_modified": "2020-09-17T14:06:42-04:00" }, { "phage_name": "Josie2020", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage was found in a compost pile that my dog named Josie likes to get into and eat.", "finder_name": "Olivia West", "found_city": "Lincoln", "found_state": "NE", "found_country": "United States of America", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2020, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": false, "discovery_notes": "The virus was found in a compost pile with store bought soil, food waste, and dog excrement.", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are small and clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, 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"Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-11-06T11:24:31-05:00", "date_modified": "2020-09-17T14:06:56-04:00" }, { "phage_name": "Jotunn", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the Giants of Norse Mythology", "finder_name": "Zachary Richardson", "found_city": "Saint Louis", "found_state": "MO", "found_country": "United States of America", "found_GPS_lat": "38.79881 N", "found_GPS_long": "90.34305 W", "found_year": 2023, "p_institution": { "institution_code": "WBST", "institution_name": "Webster University", "institution_logo": "https://phagesdb.org/media/institutions/WebsterU.jpg", "institution_url": "http://www.webster.edu/", "institution_city": "Webster Groves", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.589104", "institution_longitude": "-90.34342" }, "enriched_sample": true, "discovery_notes": "Soil was slightly moist", "isolation_temperature": 26, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Many connecting plaques, ranging from small to large", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-07-24T08:17:15-04:00", "date_modified": "2025-07-11T12:34:14-04:00" }, { "phage_name": "Journee", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Fenet G Demissie", "found_city": "Bethlehem", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.606753 N", "found_GPS_long": "75.382798 W", "found_year": 2021, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": true, "discovery_notes": "- Soil was damp from rain the day before collection\r\n- Contains organic matter, not sandy \r\n- collected ~1 inch below the surface\r\n- temperature outside was 3.9-degree celsius, felt like 1.1-degree celsius\r\n- stored inside at 17-degree celsius before enriched isolation", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Journee_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Journee_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Journee_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Journee_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2021-04-27T12:21:10-04:00", "date_modified": "2025-08-28T16:46:29-04:00" }, { "phage_name": "Journey", "old_names": "mok226@lehigh.edu", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage Journey because the journey that it took me to find my phage was meaningful, fun and the best part of everything I did.", "finder_name": "Mokhinur Kodirova", "found_city": "Bethleham", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.603027 N", "found_GPS_long": "75.80618 W", "found_year": 2023, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": true, "discovery_notes": "Soil comes from university dorm - House 89, it was collected at 3:16pm, and was collected approximately 5cm below the surface. Soil contained mostly organic matter, and a little bit of sand with small twigs in it.", "isolation_temperature": 3, "growth_notes": "", "pcluster": { "cluster": "N", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "My plaque has turbid lysis with a diameter of 1mm.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-01-23", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1762, "finishing_reactions": 0, "genome_length": 41986, "gcpercent": "66.4", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 13, "overhang_sequence": "CCCGCCGCAATGG", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 64, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Journey_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2024-06-25T23:35:01-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Journey_flat.txt", "qced_genbank_file_date": "2024-06-25T23:35:01-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PP978786", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Journey_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Journey_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Journey_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Journey.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Journey_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2023-05-05T08:00:09-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Journey13", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage is named after the Journey concert I went to in the summer of 2013, the greatest night of my life.", "finder_name": "Cole Tobin", "found_city": "Nyack", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "41.081163 N", "found_GPS_long": "73.926766 W", "found_year": 2014, "p_institution": { "institution_code": "NYAK", "institution_name": "Alliance University (formerly Nyack College)", "institution_logo": "https://phagesdb.org/media/institutions/AllianceUniversity.png", "institution_url": "https://allianceu.edu/", "institution_city": "New York", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Top soil was moist due to the rain the previous night. Sample was obtained 6 inches down below the surface.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A2" }, "morphotype": "SIPHO", "plaque_notes": "clear plaques\r\n\r\nsize after 24 hours: 4 mm\r\nsize after 48 hours: 8 mm", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2015-01-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 399, "finishing_reactions": 0, "genome_length": 48502, "gcpercent": "62.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTCGGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 81, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Journey13_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Journey13_Minimal_Final.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Journey13_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Journey13_CoverSheet.docx", "submitted_annotation_date": "2015-06-09T17:01:22-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Journey13_flat_ePV3tZq.txt", "qced_genbank_file_date": "2017-03-17T18:14:28-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KY798216", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Journey13_Plaque.jpeg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Journey13_Digest.jpeg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Journey13.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Journey13_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Journey13_ToJHJ1U.dnam5", "date_added": "2014-11-19T21:13:35-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "JovanLove", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "From a very special person that wants to give up the world for their love, no matter how big or small.", "finder_name": "Jovan Tsang", "found_city": "Pullman", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "46.729037 N", "found_GPS_long": "117.163708 W", "found_year": 2022, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "From last attempt to get phage", "isolation_temperature": 18, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-04-29T12:21:17-04:00", "date_modified": "2022-04-29T12:21:33-04:00" }, { "phage_name": "Jovi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my girlfriend’s White German Shepherd, Jovi.", "finder_name": "Jack Storm", "found_city": "Hamden", "found_state": "CT", "found_country": "United States", "found_GPS_lat": "41.333829 N", "found_GPS_long": "72.94491 W", "found_year": 2020, "p_institution": { "institution_code": "SCSU", "institution_name": "Southern Connecticut State University", "institution_logo": "https://phagesdb.org/media/institutions/SCSUlogo.jpg", "institution_url": "http://www.southernct.edu/", "institution_city": "New Haven", "institution_state": "CT", "institution_country": "USA", "institution_latitude": "41.332498", "institution_longitude": "-72.94454" }, "enriched_sample": true, "discovery_notes": "Was next to a bench by the Remembrance Garden at SCSU. While collecting, I believe I may have disturbed an anthill, as ants swarmed the collection site shortly after the soil was collected.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Very tiny", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-11-16T17:22:26-05:00", "date_modified": "2021-05-25T13:14:24-04:00" }, { "phage_name": "Jovian", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This name came from Caro, Jovian meaning \"From Jupiter\".", "finder_name": "Caro De La Garza and Jordan Coyle", "found_city": "Denton", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "33.213437 N", "found_GPS_long": "97.148979 W", "found_year": 2019, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "A new sample was collected from Marquis Hall at UNT on 9/11/2019. It was in a grassy patch. The dirt was dry, sandy, and dark.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Many small, clear, round, and symmetric plaques across the plate.", "lysogeny_notes": "Negative for lysogeny test", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "sanglieri", "strain_name": "UNT16F27A", "strain_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jovian_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Jovian_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jovian_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-22T12:41:58-05:00", "date_modified": "2020-09-17T14:11:21-04:00" }, { "phage_name": "Jovie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jovares Vereen", "found_city": "Atlanta", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "33.756075 N", "found_GPS_long": "84.382387 W", "found_year": 2011, "p_institution": { "institution_code": "GASU", "institution_name": "Georgia State University", "institution_logo": "https://phagesdb.org/media/institutions/gsu-logo.jpg", "institution_url": "http://www.gsu.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.753331", "institution_longitude": "-84.38527" }, "enriched_sample": true, "discovery_notes": "Soil was a tan color about 1.5 inches deep", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "my phage was turbid and phage size varied it was around .3mm", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2012-01-04T04:32:16-05:00", "date_modified": "2017-09-12T10:21:56-04:00" }, { "phage_name": "Jovita", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I chose the name Jovita because the soil that I found was right near Lake Jovita", "finder_name": "Gabriella Fonseca", "found_city": "San Antonio", "found_state": "FL", "found_country": "USA", "found_GPS_lat": "28.339907 N", "found_GPS_long": "82.258753 W", "found_year": 2021, "p_institution": { "institution_code": "SLEO", "institution_name": "Saint Leo University", "institution_logo": "https://phagesdb.org/media/institutions/SLEO.png", "institution_url": "http://www.saintleo.edu/", "institution_city": "Saint Leo", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "found near a tree stump by the military resource room by lake Jovita at Saint Leo University. The sample was wet and damp. Dug around an inch in the ground to collect it.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "EB", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques were circular, clear and were 3 mm.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2022-01-24", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1689, "finishing_reactions": 0, "genome_length": 41147, "gcpercent": "67.0", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "TCTCCCGGCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 68, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Jovita_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Jovita_Minimal_Final_VUZ1Hb5.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Jovita_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Jovita_CoverSheet.pdf", "submitted_annotation_date": "2022-08-30T23:37:50-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Jovita_flat.txt", "qced_genbank_file_date": "2022-08-30T23:37:50-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OP434439", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Jovita.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-01-24T12:44:12-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Jovo", "old_names": "", "program": null, "naming_notes": "", "finder_name": "J. Hourany, C. Moreno, S. Kamble, S. Ta", "found_city": "Los Angeles", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "34.05 N", "found_GPS_long": "118.25 W", "found_year": 2012, "p_institution": { "institution_code": "UCLA", "institution_name": "University of California, Los Angeles", "institution_logo": "https://phagesdb.org/media/institutions/UCLA.jpg", "institution_url": "http://www.ucla.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Isolated by Paul Noe\r\nCharacterized and annotated by Team Phage Mastering Squad: Joseph Hourany, Christian Moreno, Seema Kamble, and Sandy Ta\r\nCourses: MIMG 103AL (spring 2012), MIMG 103BL (fall 2012)\r\nInstructor: Erin Sanders\r\nTAs: Jovo Vijanderan (AL) and Will Villella (BL)\r\nCurator of genome data: Tiffany Chow", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A5" }, "morphotype": "SIPHO", "plaque_notes": "Clear plaques with average diameter of 2.75 mm", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2013-04-22", "seq_facility": { "short_name": "UCLA", "facility_name": "The UCLA Genotyping and Sequencing Core", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genoseq.ucla.edu/" }, "seq_method": { "short_name": "454", "method_name": "454" }, "coverage": 105, "finishing_reactions": 0, "genome_length": 51319, "gcpercent": "60.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGGAGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 84, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KF493882", "refseq_accession": "NC_022984", "plaque_file": "https://phagesdb.org/media/plaquePics/Jovo_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Jovo_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Jovo_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Jovo.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jovo_Plaque_Thumbs", "em_thumb_file": "https://phagesdb.org/media/emPics/Jovo_EMPic_Thumbs.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Jovo_FP.dnam5", "date_added": "2013-02-06T12:56:30-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Jowt435", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Originally designated as WW02, this phage was later named Jowt435. The name was derived by combining each of our initials, and “435” represents our lab group 5 and section 43.", "finder_name": "Jaime Corral, Ollie Windels, Will Walsh, Tyrell Ti", "found_city": "Amherst", "found_state": "MA", "found_country": "United States of America", "found_GPS_lat": "42.38701 N", "found_GPS_long": "72.52341 W", "found_year": 2025, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Soil sample collected at a fence near the right side of the house. The sample was taken from slightly damp soil (likely due to recent rain) which provided a moist environment.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The selected plaques measured approximately 2.2 mm in diameter. They were clear and round with smooth edges, indicating distinct, uniform zones of bacterial lysis. There was no bullseye pattern but instead, the plaques appeared as solid circles.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-04-07T14:02:20-04:00", "date_modified": "2025-04-07T14:02:20-04:00" }, { "phage_name": "Joy99", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ho Yee Joyce Fung and Suchita Rastogi", "found_city": "St Louis", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "38.664567 N", "found_GPS_long": "90.3179 W", "found_year": 2008, "p_institution": { "institution_code": "WUSL", "institution_name": "Washington University in St. Louis", "institution_logo": "https://phagesdb.org/media/institutions/WashU2_.jpg", "institution_url": "http://www.wustl.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.649087", "institution_longitude": "-90.31083" }, "enriched_sample": true, "discovery_notes": "Area that is used for a municipal mulch pile. Soil depth 1 cm at 70 degrees. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": { "subcluster": "K1" }, "morphotype": "SIPHO", "plaque_notes": "Three-ring morphology; clear center spot, heavy thin middle ring, clouded, turbid outer ring/incubation 24 hours at 37 degree Celsius", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2012-03-12", "seq_facility": null, "seq_method": null, "coverage": 157, "finishing_reactions": null, "genome_length": 59837, "gcpercent": "66.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CTCGTAGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 97, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Joy99_CompleteNotes_NL6QUag.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Joy99_Minimal_Final_iVIiXSA.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Joy99_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Joy99_CoverSheet.pdf", "submitted_annotation_date": "2018-06-21T14:04:49-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Joy99.flat.txt", "qced_genbank_file_date": "2018-06-21T14:04:49-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "MH536822", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Joy99_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Joy99_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Joy99.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Joy99_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Joy99_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Joyce", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Tosin Ajisebutu", "found_city": "DC", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2014, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-11-28T16:34:17-05:00", "date_modified": "2015-04-29T14:32:33-04:00" }, { "phage_name": "Joyce14", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage after my grandmother who has always supported me through my journey of education. ", "finder_name": "Lindsey", "found_city": "Harrisonburg ", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": true, "discovery_notes": "In Harrisonburg Virginia on the campus at James Madison Unversity. Behind bioscience building. From moist soil, sunny area. The area is around a rain run off stream. I dug under the first layer of dirt then took my sample. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques were larger, ciclular. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "aurum", "strain_name": "ATCC 23366", "strain_species": { "id": 36, "genus": "Mycobacterium", "species_name": "aurum", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Mycobacterium_aurum" }, "ATCC_ID": "23366", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 36, "genus": "Mycobacterium", "species_name": "aurum", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Mycobacterium_aurum" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-12-12T21:27:49-05:00", "date_modified": "2020-09-17T14:06:48-04:00" }, { "phage_name": "JoyCho", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Cho's dog is named Joy Cho.", "finder_name": "Yujeong Cho", "found_city": "Rochester Hills", "found_state": "MI", "found_country": "United States", "found_GPS_lat": "42.7 N", "found_GPS_long": "83.2 W", "found_year": 2024, "p_institution": { "institution_code": "UDTM", "institution_name": "University of Detroit Mercy", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofDetroitMercy.gif", "institution_url": "http://www.udmercy.edu/", "institution_city": "Detroit", "institution_state": "MI", "institution_country": "United States", "institution_latitude": "42.413880", "institution_longitude": "-83.13797" }, "enriched_sample": true, "discovery_notes": "Full sun, elevated garden soil bed in Rochester Hills, watered often", "isolation_temperature": 26, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JoyCho_Plaque.heic", "em_file": "https://phagesdb.org/media/emPics/JoyCho_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-03T08:31:36-05:00", "date_modified": "2025-07-11T12:34:14-04:00" }, { "phage_name": "Joyeuse", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the famous sword of Charlemagne. I was originally going to use Excalibur, but that name was already taken.", "finder_name": "Cianna Calia", "found_city": "La Jolla", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "32.874 N", "found_GPS_long": "117.2404 W", "found_year": 2017, "p_institution": { "institution_code": "UCSD", "institution_name": "University of California, San Diego", "institution_logo": "https://phagesdb.org/media/institutions/UCSD.png", "institution_url": "http://www.ucsd.edu/", "institution_city": "San Diego", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "32.880335", "institution_longitude": "-117.2340" }, "enriched_sample": null, "discovery_notes": "Soil sample collected October 9, 2017 at ~12:20pm roughly 1-2cm below the surface near the base of a small bush in Revelle College on the UCSD Campus. The soil was light brown, dry, and partially covered by rocks, sticks, and leaves.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques slightly cloudy, usually ~4mm in diameter. Sometimes appear to have a subtle resemblance to a bull's-eye.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "platensis", "strain_name": "MJ1A1", "strain_species": { "id": 41, "genus": "Streptomyces", "species_name": "platensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 41, "genus": "Streptomyces", "species_name": "platensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Joyeuse_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Joyeuse_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Joyeuse_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Joyeuse_EMPic_Thumb.png", "dnam_file": null, "date_added": "2017-12-11T08:45:01-05:00", "date_modified": "2020-07-29T15:36:00-04:00" }, { "phage_name": "JoyFul", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Emma Boyen", "found_city": "Dahlonega", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "34.55329 N", "found_GPS_long": "83.95798 W", "found_year": 2024, "p_institution": { "institution_code": "UNGA", "institution_name": "University of North Georgia", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfNorthGeorgia.jpg", "institution_url": "http://www.ung.edu/", "institution_city": "Dahlonega", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "34.527800", "institution_longitude": "-83.98442" }, "enriched_sample": true, "discovery_notes": "The soil was near water, it had some moss, and the dirt was a \r\nlittle damp.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaque is 1x1 millimeters in size. The plaques are round and \r\ncloudy but have clear and defined edges", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/JoyFul_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-11T11:45:39-05:00", "date_modified": "2024-11-11T11:45:39-05:00" }, { "phage_name": "JoyLin", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "Named after my mother, who is the reason I'm here today.\r\n\r\nAnnotated by T. Chiu.", "finder_name": "Theresa Chiu", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "", "found_GPS_lat": "40.442808 N", "found_GPS_long": "79.963726 W", "found_year": 2024, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Found in the soil under a tree next to Salk Hall & Pavilion", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "JA", "temperate": null }, "psubcluster": null, "morphotype": "", "plaque_notes": "Round, circular clear plaques. Some have faint trails.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-08-13", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 5742, "finishing_reactions": 0, "genome_length": 57226, "gcpercent": "59.4", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CGCCCAGCC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 85, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JoyLin_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2025-01-08T00:16:09-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/JoyLin.gbf", "qced_genbank_file_date": "2025-01-08T00:16:09-05:00", "isolation_host": { "genus": "Curtobacterium", "species": "flaccumfaciens", "strain_name": "NRRL B-729 SEA", "strain_species": { "id": 97, "genus": "Curtobacterium", "species_name": "flaccumfaciens", "species_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 97, "genus": "Curtobacterium", "species_name": "flaccumfaciens", "species_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PQ868962", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JoyLin_Plaque.tif", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/JoyLin_Digest.png", "vdigest_file": "https://phagesdb.org/media/vDigestPics/JoyLin_VirtualDigest.png", "fasta_file": "https://phagesdb.org/media/fastas/JoyLin.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-05-29T08:30:30-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "JoyMa", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage after 2 very special people in my life. The first part, Joy, is named after my God Daughter, Joy. She is so very special to me. Even though she is too little to understand what a phage is, I want to be able to give her something special in her name that will help people and the science community down the road. The second part, Ma, is a tribute to my great grandma, Ma, who made one of the biggest impacts on my life. She was my role model and who I aspire to be like, so I wanted to add her name. It's the idea that I aspire to be like Ma, and I want Joy to aspire to be like me.", "finder_name": "Emma Miller", "found_city": "Grand Rapids", "found_state": "MI", "found_country": "United States", "found_GPS_lat": "42.92774 N", "found_GPS_long": "85.58916 W", "found_year": 2024, "p_institution": { "institution_code": "CALV", "institution_name": "Calvin University", "institution_logo": "https://phagesdb.org/media/institutions/CalvinLogo.png", "institution_url": "http://www.calvin.edu/", "institution_city": "Grand Rapids", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.930074", "institution_longitude": "-85.58763" }, "enriched_sample": true, "discovery_notes": "I discovered my phage from soil found near the edge of a wooded area, at the base of a tree. The wooded area was on Calvin University's property at DeWit Manor. I dug slightly so that the top layer of leaves, acorns, etc. did not get into the soil. The soil was very dry and had to be scraped with a stick before being able to get into my collection tube. 15mL of soil was collected. We were in the midst of a dry time, where it had not rained much at all, and not recently before collection.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "I had so many plaques, they were unable to be counted. One side of my plate had most plaques, while the other side had only a few phages. Plaques have rounded edges. The plaques were clear in the center, but the edges faded into more turbid.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Rhodococcus", "species": "equi", "strain_name": "NRRL B-16538", "strain_species": { "id": 31, "genus": "Rhodococcus", "species_name": "equi", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus_equi" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 31, "genus": "Rhodococcus", "species_name": "equi", "species_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "species_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus_equi" }, "host_genus": { "id": 2, "genus_domain": "Bacteria", "genus_name": "Rhodococcus", "genus_wikipedia": "http://en.wikipedia.org/wiki/Rhodococcus", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JoyMa_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-29T11:09:50-04:00", "date_modified": "2025-04-04T11:37:25-04:00" }, { "phage_name": "Joyous", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Luie Albert Kimbrow IV", "found_city": "Atlanta", "found_state": "GA", "found_country": "United States of America", "found_GPS_lat": "33.7 N", "found_GPS_long": "84.4 W", "found_year": 2019, "p_institution": { "institution_code": "MORE", "institution_name": "Morehouse College", "institution_logo": "https://phagesdb.org/media/institutions/Morehouse_Logo.jpg", "institution_url": "http://www.morehouse.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.746175", "institution_longitude": "-84.41438" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 32, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Joyous_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Joyous_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-12-02T14:56:30-05:00", "date_modified": "2020-09-17T14:11:40-04:00" }, { "phage_name": "Joyride", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Chloe Koon", "found_city": "Bowling Green", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "41.359524 N", "found_GPS_long": "83.657342 W", "found_year": 2018, "p_institution": { "institution_code": "BGSU", "institution_name": "Bowling Green State University", "institution_logo": "https://phagesdb.org/media/institutions/BowlingGreenStateUniversity.jpg", "institution_url": "https://www.bgsu.edu/", "institution_city": "Bowling Green", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "41.379062", "institution_longitude": "-83.63134" }, "enriched_sample": null, "discovery_notes": "Dry and Loamy\r\nOrganic Matter", "isolation_temperature": 33, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small plaques: about 1 mm and clear with turbid edge\r\nLarge plaques: about 4 mm and clear with turbid edge", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-09-23T20:29:51-04:00", "date_modified": "2020-09-17T14:10:01-04:00" }, { "phage_name": "JoyRose", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Joy is my cat’s name and Rose is my middle name. This phage was isolated from the Sparkill Creek near campus.", "finder_name": "Dr. Bernadette Connors", "found_city": "Blauvelt", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "41.096485 N", "found_GPS_long": "73.972916 W", "found_year": 2018, "p_institution": { "institution_code": "DCBL", "institution_name": "Dominican University New York", "institution_logo": "https://phagesdb.org/media/institutions/CV_DU_stacked_2022.png", "institution_url": "https://www.duny.edu/", "institution_city": "Orangeburg", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.039643", "institution_longitude": "-73.94976" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JoyRose_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JoyRose_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-09-26T12:16:25-04:00", "date_modified": "2020-09-17T14:10:21-04:00" }, { "phage_name": "Joys", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Sion Kim", "found_city": "Orangeburg", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "41.040667 N", "found_GPS_long": "73.970904 W", "found_year": 2019, "p_institution": { "institution_code": "DCBL", "institution_name": "Dominican University New York", "institution_logo": "https://phagesdb.org/media/institutions/CV_DU_stacked_2022.png", "institution_url": "https://www.duny.edu/", "institution_city": "Orangeburg", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.039643", "institution_longitude": "-73.94976" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Joys_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Joys_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-13T22:50:09-05:00", "date_modified": "2021-01-28T11:04:03-05:00" }, { "phage_name": "JozieStrong", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after a hashtag for my niece, who is battling brain cancer at eight years old.\r\n#JozieStrong", "finder_name": "Leanna Hartsock and Ella Kasten", "found_city": "Charleston", "found_state": "SC", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2025, "p_institution": { "institution_code": "CCHA", "institution_name": "College of Charleston", "institution_logo": "https://phagesdb.org/media/institutions/cofc_logo_red.jpg", "institution_url": "http://www.cofc.edu/", "institution_city": "Charleston", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "32.783974", "institution_longitude": "-79.93820" }, "enriched_sample": true, "discovery_notes": "Found in a walkway next to a dog park.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Size: Small to Medium\r\nEdge: Mostly defined margins (illusion due to smaller plaques next to the larger ones make it seem as if the margins are undefined)\r\nClarity: Clear - lytic phage\r\nDistribution: Uneven (varied, possibly due to pooling or tilting)", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "HHMI", "facility_name": "HHMI SEAquencing Core", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JozieStrong_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/JozieStrong_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/JozieStrong_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-04-16T15:20:51-04:00", "date_modified": "2025-04-17T10:43:59-04:00" }, { "phage_name": "JP19", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named our phage after our lab manager, JP.", "finder_name": "Nikita, JP, Arjun, Regina", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.4462 N", "found_GPS_long": "79.9532 W", "found_year": 2020, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "Taken from soil outside of Clapp Hall at the University of Pittsburgh. The soil was damp from the rain and a dark brown.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small plaques (1-2 mm), turbid", "lysogeny_notes": "Temperate life cycle", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JP19_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JP19_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2020-11-12T15:33:38-05:00", "date_modified": "2021-01-28T11:04:32-05:00" }, { "phage_name": "Jpaige", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "the first initial and middle name of my best friend.", "finder_name": "Casey Moyer", "found_city": "Monroeville", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2025, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "Found next to apartment building parking lot at 7:49am.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-07-22T14:09:28-04:00", "date_modified": "2025-07-22T14:09:28-04:00" }, { "phage_name": "JPandJE", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is a combination of initials of the two partners", "finder_name": "John Erickson", "found_city": "Evansville", "found_state": "IN", "found_country": "United States of America", "found_GPS_lat": "37.971667 N", "found_GPS_long": "87.530556 W", "found_year": 2021, "p_institution": { "institution_code": "UEVN", "institution_name": "University of Evansville", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfEvansville.jpg", "institution_url": "https://www.evansville.edu/", "institution_city": "Evansville", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "37.973242", "institution_longitude": "-87.53251" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 27, "growth_notes": "", "pcluster": { "cluster": "BF", "temperate": false }, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "The plaques are small, circular plaques that all compare to one another.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2022-01-10", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3616, "finishing_reactions": 0, "genome_length": 46427, "gcpercent": "59.6", "end_type": "TREP", "repeat_length": 275, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 63, "num_tRNAs": 22, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JPandJE_CompleteNotes.xlsx", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JPandJE_Minimal_Final_0sG4lWR.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/JPandJE_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/JPandJE_CoverSheet.docx", "submitted_annotation_date": "2022-06-10T20:09:18-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/JPandJE_flat.txt", "qced_genbank_file_date": "2022-06-10T20:09:18-04:00", "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "ON970569", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JPandJE_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/JPandJE_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/JPandJE_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/JPandJE.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-09T16:43:29-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "JPhallon", "old_names": "Phagadelphia", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named this phage Phageadelphia because the phage was found in Philadelphia and I was born and raised in or around Philly my whole life. ", "finder_name": "Brianna Schaffer", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.958442 N", "found_GPS_long": "75.189699 E", "found_year": 2016, "p_institution": { "institution_code": "DRXL", "institution_name": "Drexel University", "institution_logo": "https://phagesdb.org/media/institutions/logo-drexel.jpg", "institution_url": "http://drexel.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "This phage was found in very moist soil on a partly cloudy and very humid. It was also 80 degrees Fahrenheit on this day. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques were very small, slightly less than 1 mm. They are clear, circular, and not turbid. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-12-01T22:31:31-05:00", "date_modified": "2020-09-17T14:07:28-04:00" }, { "phage_name": "JPickles", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Pickles is a code word that my boyfriend and I use and his name starts with a J, therefore JPickles. Name was changed from Pickles1025 to JPickles after second titration for simplicity.", "finder_name": "Leya Givvines", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.99479 N", "found_GPS_long": "75.243011 W", "found_year": 2018, "p_institution": { "institution_code": "STJO", "institution_name": "Saint Joseph's University", "institution_logo": "https://phagesdb.org/media/institutions/SJU.jpg", "institution_url": "http://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "39.995544", "institution_longitude": "-75.23895" }, "enriched_sample": true, "discovery_notes": "-Collected at 11:14 am on September 4th 2018\r\n-Collected near Saint Joseph's University Chapel\r\n-Soil Slightly moist at collection\r\n-Soil was collected 5.1 cm down\r\n-Soil collected while outside temperature was 32.78 degrees Celsius\r\n-Humidity was 50% at time of collection\r\n-There was moderate temperature days before collection.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "C", "temperate": false }, "psubcluster": { "subcluster": "C1" }, "morphotype": "MYO", "plaque_notes": "Phage produced clear plaques ranging from 2 to 4 mm in diameter. Plaques developed after two days in incubator at 37 degrees Celsius.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-01-25", "seq_facility": { "short_name": "NCSTATE", "facility_name": "NC State Genomic Sciences Laboratory", "contact_person": "Jenn Schaff", "shipping_address": "", "facility_website": "http://research.ncsu.edu/gsl/" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1221, "finishing_reactions": 0, "genome_length": 155116, "gcpercent": "64.7", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 230, "num_tRNAs": 33, "num_tmRNAs": 1, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JPickles_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JPickles_Minimal_Final_AJ8QcWN.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/JPickles_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/JPickles_CoverSheet.pdf", "submitted_annotation_date": "2019-07-12T15:20:12-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/JPickles_flat_qj6ZSHT.txt", "qced_genbank_file_date": "2019-07-12T15:20:12-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN428066", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JPickles_Plaque.pdf", "em_file": "https://phagesdb.org/media/emPics/JPickles_EMPic.pdf", "digest_file": "https://phagesdb.org/media/digestPics/JPickles_Digest.pdf", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/JPickles.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JPickles_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/JPickles_EMPic_Thumb.png", "dnam_file": null, "date_added": "2018-10-30T16:10:33-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "JPJones", "old_names": "JohnPaulJones", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Lauren Hudson, Jessica Classen", "found_city": "Pullman", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "46.7298 N", "found_GPS_long": "117.1817 W", "found_year": 2019, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-08T14:06:23-05:00", "date_modified": "2019-11-08T14:07:07-05:00" }, { "phage_name": "JRamberg", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "Name of best friend", "finder_name": "Lillian McIntire", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.4505 N", "found_GPS_long": "79.9511 W", "found_year": 2021, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Rainy (wet soil)\r\nCollected in front garden of Schenley Apartments", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-05-28T14:11:47-04:00", "date_modified": "2021-10-15T14:03:17-04:00" }, { "phage_name": "JRambo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Rambo movie played by Sylvester Stallone", "finder_name": "Jada Dickerson, Dania Mahmood", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.4385 N", "found_GPS_long": "80.15026 W", "found_year": 2024, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "mirabilis", "strain_name": "NRRL B-2400", "strain_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JRambo_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/JRambo_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JRambo_Plaque.png", "em_thumb_file": "https://phagesdb.org/media/emPics/JRambo_EMPic.png", "dnam_file": null, "date_added": "2024-10-01T10:04:01-04:00", "date_modified": "2025-04-04T11:37:44-04:00" }, { "phage_name": "JRok", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We decided to name our phage after the nickname we gave our favorite biology professor. His name is Jared Rokowski, but everyone called him JRok", "finder_name": "Allison Lecitshon & Gracious Anithanam", "found_city": "Dupont", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "41.323289 N", "found_GPS_long": "75.741829 W", "found_year": 2019, "p_institution": { "institution_code": "USPH", "institution_name": "University of the Sciences (now St. Joseph's Univ)", "institution_logo": "https://phagesdb.org/media/institutions/USciences.png", "institution_url": "https://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "39.947118", "institution_longitude": "-75.20724" }, "enriched_sample": true, "discovery_notes": "Found in grandparents driveway, with lots of trees and cars around. Was around 6 feet from the road. Sample was collected by a clean shovel to avoid cross contamination.", "isolation_temperature": 22, "growth_notes": "", "pcluster": { "cluster": "EE", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "4-5 millimeters, bullseye center.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-02-20", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 151, "finishing_reactions": 0, "genome_length": 17382, "gcpercent": "68.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 25, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JRok_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2020-06-05T10:53:55-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/JRok_flat.txt", "qced_genbank_file_date": "2020-06-05T10:53:55-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MT639647", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JRok_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/JRok_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/JRok_Digest.jpeg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/JRok.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JRok_Plaque_Thumb.jpeg", "em_thumb_file": "https://phagesdb.org/media/emPics/JRok_EMPic_Thumb.jpeg", "dnam_file": null, "date_added": "2019-11-08T18:42:05-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "JrsyGrl", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from a variation of the name of my dog, Jersey Girl.", "finder_name": "Emma Pataky", "found_city": "Charleston", "found_state": "SC", "found_country": "USA", "found_GPS_lat": "32.723 N", "found_GPS_long": "79.937 W", "found_year": 2022, "p_institution": { "institution_code": "CCHA", "institution_name": "College of Charleston", "institution_logo": "https://phagesdb.org/media/institutions/cofc_logo_red.jpg", "institution_url": "http://www.cofc.edu/", "institution_city": "Charleston", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "32.783974", "institution_longitude": "-79.93820" }, "enriched_sample": true, "discovery_notes": "This soil sample was collected at 8:33 pm. The temperature at the time was 75 degrees Fahrenheit and was slightly wet from rain. About 15 mL of soil were collected. The soil was collected in the center of the College of Charleston, the Cistern, by a tree.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JrsyGrl_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/JrsyGrl_EMPic_u2hUQaz.TIF", "digest_file": "https://phagesdb.org/media/digestPics/JrsyGrl_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/JrsyGrl_Emma_087-Thumbnail.jpg", "dnam_file": null, "date_added": "2022-11-30T08:48:24-05:00", "date_modified": "2024-02-25T15:28:07-05:00" }, { "phage_name": "JrWilcox", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jordan Wilcox", "found_city": "Cullowhee", "found_state": "NC", "found_country": "United States", "found_GPS_lat": "35.30917 N", "found_GPS_long": "83.178767 W", "found_year": 2023, "p_institution": { "institution_code": "WCAR", "institution_name": "Western Carolina University", "institution_logo": "https://phagesdb.org/media/institutions/westerncarolina.jpg", "institution_url": "http://www.wcu.edu/", "institution_city": "Cullowhee", "institution_state": "NC", "institution_country": "United States", "institution_latitude": "35.308879", "institution_longitude": "-83.18506" }, "enriched_sample": true, "discovery_notes": "Found soil sample at the top of the stairs behind Albright residence hall beneath the railing on the stairs under the fallen leaves and pine needles.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NRRL B-24275", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JrWilcox_Plaque.pdf", "em_file": "https://phagesdb.org/media/emPics/JrWilcox_EMPic_Q1v5slx.tif", "digest_file": "https://phagesdb.org/media/digestPics/JrWilcox_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JrWilcox_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/JrWilcox_EMPic_Thumb.png", "dnam_file": null, "date_added": "2023-10-09T15:14:35-04:00", "date_modified": "2024-02-25T15:28:21-05:00" }, { "phage_name": "JSmoove", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jasanta Ackles-Wright", "found_city": "Atlanta", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "34.748736 N", "found_GPS_long": "84.414306 W", "found_year": 2015, "p_institution": { "institution_code": "MORE", "institution_name": "Morehouse College", "institution_logo": "https://phagesdb.org/media/institutions/Morehouse_Logo.jpg", "institution_url": "http://www.morehouse.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.746175", "institution_longitude": "-84.41438" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JSmoove_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JSmoove_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2015-11-23T17:20:13-05:00", "date_modified": "2020-09-17T14:06:25-04:00" }, { "phage_name": "JSoil", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "JSoil was collected in soil near a church", "finder_name": "Rebekah Christensen", "found_city": "Boulder", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "40.033 N", "found_GPS_long": "105.1547 W", "found_year": 2014, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "Mostly dried up creek bed for excess drainage near a church", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "clear and round, 2mm diameter, incubated 48h at 37C.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JSoil_Plaque.JPG", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/JSoil_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JSoil_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2014-05-20T15:37:59-04:00", "date_modified": "2020-09-17T14:05:43-04:00" }, { "phage_name": "Jsquared", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Joseph Marin & John Golaszewski", "found_city": "Corpus Christi", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "27.787083 N", "found_GPS_long": "97.392633 W", "found_year": 2011, "p_institution": { "institution_code": "DLMR", "institution_name": "Del Mar College", "institution_logo": "https://phagesdb.org/media/institutions/DelMarLogo_.jpg", "institution_url": "http://www.delmar.edu/", "institution_city": "Corpus Christi", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "27.764369", "institution_longitude": "-97.40711" }, "enriched_sample": true, "discovery_notes": "soil and sand mixture, 3 inch depth, 86 degrees Fahrenheit, coastal and moist environment. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A2" }, "morphotype": "SIPHO", "plaque_notes": "3-4 mm temperate halo plaques incubated at 37 degrees Celsius for 48 hrs. ", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2012-04-10", "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": 52967, "gcpercent": "62.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTCGGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 101, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Jsquared_Final.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Jsquared_Minimal_Final.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Jsquared_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Jsquared_CoverSheet.txt", "submitted_annotation_date": "2018-02-26T09:38:21-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Jsquared_final_flat.txt", "qced_genbank_file_date": "2018-02-26T09:38:21-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "MH020237", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jsquared_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Jsquared_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Jsquared_Digest.docx", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Jsquared.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jsquared_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Jsquared_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-11-08T05:13:46-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Jstan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is derived from the discoverers name.", "finder_name": "James Standish", "found_city": "New Haven", "found_state": "CT", "found_country": "USA", "found_GPS_lat": "41.33386 N", "found_GPS_long": "72.94507 W", "found_year": 2022, "p_institution": { "institution_code": "SCSU", "institution_name": "Southern Connecticut State University", "institution_logo": "https://phagesdb.org/media/institutions/SCSUlogo.jpg", "institution_url": "http://www.southernct.edu/", "institution_city": "New Haven", "institution_state": "CT", "institution_country": "USA", "institution_latitude": "41.332498", "institution_longitude": "-72.94454" }, "enriched_sample": true, "discovery_notes": "Was discovered in damp soil near a memorial remembering the lives lost at sandy hook elementary.", "isolation_temperature": 34, "growth_notes": "", "pcluster": { "cluster": "AZ", "temperate": true }, "psubcluster": { "subcluster": "AZ1" }, "morphotype": "", "plaque_notes": "The plaques appeared to be around 1 mm in diameter and had smooth edges. The plaques also appear to be temperate.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2023-01-17", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2213, "finishing_reactions": 0, "genome_length": 43475, "gcpercent": "66.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CGAAGGGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 70, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Jstan.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-14T08:45:25-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Jsuggs", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The student researchers are Rachel Williams, Morgan Mendes, Sophia Borella, Clare Cibula, Jillian Gunsky, and Kaitlin Le. This phage was named after a basketball player at Gonzaga University.", "finder_name": "Marianne Poxleitner, Ellie Stiffler", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.666216 N", "found_GPS_long": "117.398028 W", "found_year": 2021, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Time of year: January 2021\r\n\r\nSnow? No\r\n\r\nDepth: 1 inch\r\n\r\nConsistency: muddy\r\n\r\nGrass? Yes", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The morphology is tiny, uniform in size, dark.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jsuggs_Plaque_vnajhdP.jpeg", "em_file": "https://phagesdb.org/media/emPics/Jsuggs_EMPic_ZsluxaV.jpeg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jsuggs_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Jsuggs_TEM_thumb.png", "dnam_file": null, "date_added": "2021-04-06T14:57:17-04:00", "date_modified": "2022-03-16T11:02:42-04:00" }, { "phage_name": "JSwag", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of this phage came from the biology teacher that Alexandria had in high school. He helped Alexandria become interested in biology as a major and helped to nurture a love of science in Alexandria.", "finder_name": "Alexandria Wojtak and Katelyn Chester", "found_city": "Waterford", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "42.790736 N", "found_GPS_long": "88.229188 W", "found_year": 2015, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "The soil was dry, loose, and some of the soil was clumped together. The soil was collected from a depth of around 152.4 mm. It was collected from a garden that is fertilized regularly with llama beans and compost. ", "isolation_temperature": 25, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A15" }, "morphotype": "SIPHO", "plaque_notes": "The plagues were on the smaller side of average.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-02-17", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2276, "finishing_reactions": 0, "genome_length": 52726, "gcpercent": "61.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGGTGGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 101, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JSwag_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JSwag_Minimal_Final.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/JSwag_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/JSwag_CoverSheet.pdf", "submitted_annotation_date": "2016-07-01T17:48:38-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/JSwag_final_flat.txt", "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KX557280", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JSwag_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/JSwag_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/JSwag_Digest.tif", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/JSwag.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JSwag_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/JSwag_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/JSwag_gb.dnam5", "date_added": "2015-12-09T16:34:20-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "JTan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named this phage after myself.", "finder_name": "Jessica Tan", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.330887 N", "found_GPS_long": "76.620374 W", "found_year": 2015, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": null, "discovery_notes": "Dug the soil from ~5-8cm deep outside of the Johns Hopkins Undergraduate Teach Laboratory. The soil was a little bit moist with woodchips and the temperature was 30.5 degrees Celsius. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JTAN_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/JTAN_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JTan_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/JTan_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-12-02T09:48:25-05:00", "date_modified": "2020-09-17T14:09:26-04:00" }, { "phage_name": "JTimber", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Fan of Justin Timberlake. Thinks of Justin Timberlake when walking into the class, because of listening to his music while walking into class on the first day ", "finder_name": "Zidan Douglas, Mikayla Pileggi, Elise Fagan", "found_city": "Newburgh", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "41.3042 N", "found_GPS_long": "74.0042 W", "found_year": 2018, "p_institution": { "institution_code": "MSMC", "institution_name": "Mount Saint Mary College", "institution_logo": "https://phagesdb.org/media/institutions/MountSaintMaryCollege.JPG", "institution_url": "http://www.msmc.edu/", "institution_city": "Newburgh", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.512859", "institution_longitude": "-74.01247" }, "enriched_sample": false, "discovery_notes": "Direct Isolation", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are cloudy and small. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JTimber_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/JTimber_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/JTimber_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JTimber_Plaque.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/JTimber_EMPic.jpg", "dnam_file": null, "date_added": "2018-10-24T21:48:39-04:00", "date_modified": "2020-09-17T14:09:57-04:00" }, { "phage_name": "Jtin", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Richard Hale", "found_city": "Argyle", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.135858 N", "found_GPS_long": "97.139827 W", "found_year": 2013, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "venezuelae", "strain_name": "ATCC 10712", "strain_species": { "id": 5, "genus": "Streptomyces", "species_name": "venezuelae", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10712", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 5, "genus": "Streptomyces", "species_name": "venezuelae", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jtin_Plaque.tif", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jtin_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2014-01-16T13:38:41-05:00", "date_modified": "2020-09-17T14:09:23-04:00" }, { "phage_name": "Juan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Number Juan Phage. ", "finder_name": "Maria Eugenia Jaime", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2012, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": true, "discovery_notes": "Juan the phage was discovered on September 6, 2012, five centimeters deep into a patch of damp soil. This sample of soil was found in a community garden (39º 19’ 34.24”N, -76º 37’ 1.12”W), four centimeters away from a bamboo plant, at a temperature of about 26ºC . ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "D", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "The phage does not appear to be Lysogenic", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2012-11-29T13:43:11-05:00", "date_modified": "2020-09-17T14:05:57-04:00" }, { "phage_name": "Juan09", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after a dorm room 109, however, the 1 and 0 have been replaced with Juanoh.", "finder_name": "Katie Pawlikowski", "found_city": "Charlotte", "found_state": "NC", "found_country": "USA", "found_GPS_lat": "35.19 N", "found_GPS_long": "80.8337 W", "found_year": 2017, "p_institution": { "institution_code": "QUCH", "institution_name": "Queens University of Charlotte", "institution_logo": "https://phagesdb.org/media/institutions/QueensUniversityOfCharlotte.jpg", "institution_url": "http://www.queens.edu/", "institution_city": "Charlotte", "institution_state": "NC", "institution_country": "USA", "institution_latitude": "35.188490", "institution_longitude": "-80.83339" }, "enriched_sample": true, "discovery_notes": "Soil was collected from a succulent garden in HBO dorm on Queens University campus. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-12-06T07:52:41-05:00", "date_modified": "2020-09-17T14:08:41-04:00" }, { "phage_name": "Juana", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name Juana was derived from a combination of both our first names, the first part of Justin and the end of Johanna.", "finder_name": "Justin Perez, Johanna Ontiveros", "found_city": "Corpus Christi", "found_state": "TX", "found_country": "US", "found_GPS_lat": "27.748056 N", "found_GPS_long": "97.427222 W", "found_year": 2019, "p_institution": { "institution_code": "DLMR", "institution_name": "Del Mar College", "institution_logo": "https://phagesdb.org/media/institutions/DelMarLogo_.jpg", "institution_url": "http://www.delmar.edu/", "institution_city": "Corpus Christi", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "27.764369", "institution_longitude": "-97.40711" }, "enriched_sample": true, "discovery_notes": "The area the soil was collected is near to a busy road, with large amounts of foot traffic. The area is also frequented by dogs. The area is within a few miles of the Gulf of Mexico.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The phage had very small lytic plaques sized approximately 0.15cm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-12-06T19:49:57-05:00", "date_modified": "2019-12-06T19:49:57-05:00" }, { "phage_name": "Juanamari", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Alex Caballero, Nick Leibowitz", "found_city": "Fort Kent", "found_state": "ME", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2011, "p_institution": { "institution_code": "UMFK", "institution_name": "University of Maine, Fort Kent", "institution_logo": "https://phagesdb.org/media/institutions/umfk.jpg", "institution_url": "http://www.umfk.maine.edu/", "institution_city": "Fort Kent", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "47.249851", "institution_longitude": "-68.59010" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Juanamari_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Juanamari_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Juanamari_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Juanamari_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-12-11T20:17:32-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Juanita", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Victoria Murillo Quiroga", "found_city": "Bismarck", "found_state": "ND", "found_country": "United States", "found_GPS_lat": "46.72 N", "found_GPS_long": "100.75 W", "found_year": 2019, "p_institution": { "institution_code": "UMRY", "institution_name": "University of Mary", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfMary.jpg", "institution_url": "http://www.umary.edu/", "institution_city": "Bismarck", "institution_state": "ND", "institution_country": "USA", "institution_latitude": "46.721954", "institution_longitude": "-100.7531" }, "enriched_sample": true, "discovery_notes": "Found in building Greg Butler", "isolation_temperature": 4, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-12-12T08:54:42-05:00", "date_modified": "2020-09-17T14:11:48-04:00" }, { "phage_name": "Juanito", "old_names": "Germiah", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The naming came from my coworkers. I am not creative with naming things so I asked my coworkers for some inspiration.", "finder_name": "Yissel Motta", "found_city": "Las Vegas", "found_state": "NV", "found_country": "United States", "found_GPS_lat": "36.189722 N", "found_GPS_long": "115.031389 W", "found_year": 2023, "p_institution": { "institution_code": "CSNV", "institution_name": "College of Southern Nevada", "institution_logo": "https://phagesdb.org/media/institutions/college_of_southern_nevada.png", "institution_url": "https://www.csn.edu/", "institution_city": "Las Vegas", "institution_state": "NV", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The phage was taken from a dog park next to a metal pole. There was a dead grass spot and that was where the soil was taken from. There was a wet spot. The temperature outside was 88°F.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques were large compared to my other classmates. The plaques were also very clear to see.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-21T10:45:57-05:00", "date_modified": "2024-02-25T15:28:16-05:00" }, { "phage_name": "JuanPablo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I was working with a little boy named Juan Pablo and he was playing in the soil where I isolated this phage", "finder_name": "Matthew Benczkowski", "found_city": "Tena", "found_state": "", "found_country": "Ecuador", "found_GPS_lat": "1.0636 S", "found_GPS_long": "77.9053 W", "found_year": 2018, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Soil taken on a very hot, dry day just outside of the Amazon Rainforest", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-04-26T02:35:02-04:00", "date_modified": "2020-09-17T14:10:53-04:00" }, { "phage_name": "Juansa", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage Juansa because my lab neighbor and I both got our soil sample from the same location. I mixed our names together to come up with Juansa.", "finder_name": "Nisa Khan", "found_city": "Lisle", "found_state": "IL", "found_country": "United States", "found_GPS_lat": "41.463 N", "found_GPS_long": "88.551 W", "found_year": 2023, "p_institution": { "institution_code": "BENU", "institution_name": "Benedictine University", "institution_logo": "https://phagesdb.org/media/institutions/PrimaryPNG-red-bl.png", "institution_url": "http://www.ben.edu/", "institution_city": "Lisle", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "I went to the lake to get my sample of soil for this procedure. I chose this area, because the soil looked healthy, not too dry and not too wet. The plaques were lytic since they were perfectly round and clear with no blurriness or fuzzy edges. I got my soil from right next to the lake, which means it had more nutrients since the soil around the lake supports the lake's ecosystem. The sample probably had more organic matter such as bacteria which resulted in my soil sample being more concentrated.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "My phage's morphology was sipohviridae. My phage was lytic and had a diameter of 1.1 mm initially, but it kept shrinking as the assays went on. The last time I measured my phage was 0.85mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Juansa_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Juansa_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Juansa_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-28T09:46:09-05:00", "date_modified": "2025-07-11T12:34:15-04:00" }, { "phage_name": "Juanyo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Juanyo is my nickname.", "finder_name": "Juan A. Colon-Vargas", "found_city": "Jayuya", "found_state": "PR", "found_country": "USA", "found_GPS_lat": "18.216389 N", "found_GPS_long": "66.601667 W", "found_year": 2021, "p_institution": { "institution_code": "UPRC", "institution_name": "University of Puerto Rico at Cayey", "institution_logo": "https://phagesdb.org/media/institutions/PuertoRicoCayey.gif", "institution_url": "http://www.cayey.upr.edu/", "institution_city": "Cayey", "institution_state": "PR", "institution_country": "USA", "institution_latitude": "18.117905", "institution_longitude": "-66.16160" }, "enriched_sample": true, "discovery_notes": "Soil was dry.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "EA", "temperate": false }, "psubcluster": { "subcluster": "EA10" }, "morphotype": "", "plaque_notes": "Turbid plaques with a big halo, although the center is very clear. Plaque size is approx. 5 mm.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-12-02", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1962, "finishing_reactions": 0, "genome_length": 41028, "gcpercent": "63.7", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 65, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Juanyo_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Juanyo_Minimal_Final_OqoMlbK.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Juanyo_Authors_dfoigLT.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Juanyo_CoverSheet.pdf", "submitted_annotation_date": "2022-05-10T10:17:39-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Juanyo_flat.txt", "qced_genbank_file_date": "2022-05-10T10:17:39-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "ON526972", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Juanyo_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Juanyo.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-04T10:31:10-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Juarez", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Justin O'Hara", "found_city": "Southlake", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "32.935627 N", "found_GPS_long": "97.174975 W", "found_year": 2009, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "Front yard, garden, under a tree", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "5mm, clear, 24 hrs., 37ºC", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Juarez_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Juarez_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Juarez_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Juarez_Plaque_Thumb_g9aF35d.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Juarez_EMPic_Thumb.png", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2020-08-11T13:58:55-04:00" }, { "phage_name": "Jubie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my cat.", "finder_name": "Samantha Varenkamp", "found_city": "Port St. Lucie", "found_state": "FL", "found_country": "USA", "found_GPS_lat": "27.32 N", "found_GPS_long": "80.4 W", "found_year": 2019, "p_institution": { "institution_code": "IRSC", "institution_name": "Indian River State College", "institution_logo": "https://phagesdb.org/media/institutions/logo_irsc2.png", "institution_url": "http://www.irsc.edu/", "institution_city": "Fort Pierce", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "27.423570", "institution_longitude": "-80.35789" }, "enriched_sample": true, "discovery_notes": "My phage was found in moist soil that contained some grass. It was found behind the school campus.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "L", "temperate": true }, "psubcluster": { "subcluster": "L3" }, "morphotype": "SIPHO", "plaque_notes": "Plaques are turbid and clear.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-12-23", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1446, "finishing_reactions": 0, "genome_length": 75782, "gcpercent": "59.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "TCGATCAGCC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 130, "num_tRNAs": 10, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Jubie_Minimal_Final_Enfi8Jc.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2020-10-23T09:56:29-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Jubie_Jy5Xx1K.txt", "qced_genbank_file_date": "2020-10-23T09:56:29-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MW291024", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jubie_Plaque.HEIC", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Jubie_Digest.JPG", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Jubie.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-06T15:45:38-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Jubilee", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage was named after my dog", "finder_name": "Duncan Troup and Elijah Christenson", "found_city": "Arkadelphia", "found_state": "AR", "found_country": "United States", "found_GPS_lat": "34.179026 N", "found_GPS_long": "93.079659 W", "found_year": 2021, "p_institution": { "institution_code": "OUBU", "institution_name": "Ouachita Baptist University", "institution_logo": "https://phagesdb.org/media/institutions/ouachita-baptist-university.jpg", "institution_url": "http://www.obu.edu/", "institution_city": "Arkadelphia", "institution_state": "AR", "institution_country": "USA", "institution_latitude": "34.125830", "institution_longitude": "-93.05277" }, "enriched_sample": true, "discovery_notes": "This phage was discovered from a chicken coop. it was collected from compost", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "1mm round with clear centers and cloudy edges", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jubilee_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Jubilee_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Jubilee_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2021-11-16T11:55:57-05:00", "date_modified": "2023-01-30T07:32:53-05:00" }, { "phage_name": "JuChiu07", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "Named after my sister, Julia!", "finder_name": "Theresa Chiu", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "", "found_GPS_lat": "40.442808 N", "found_GPS_long": "79.963726 W", "found_year": 2024, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Found in the soil under a tree next to Salk Hall & Pavilion", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Tiny, very clear circles.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Curtobacterium", "species": "flaccumfaciens", "strain_name": "NRRL B-59340", "strain_species": { "id": 97, "genus": "Curtobacterium", "species_name": "flaccumfaciens", "species_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 97, "genus": "Curtobacterium", "species_name": "flaccumfaciens", "species_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JuChiu07_Plaque.tif", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-05-29T08:30:17-04:00", "date_modified": "2025-08-01T10:53:37-04:00" }, { "phage_name": "Judas", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Judas, because it kept betraying me in lab. ", "finder_name": "Ryan Brown", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.66 N", "found_GPS_long": "117.4 W", "found_year": 2014, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Phage was grown at 37 degrees C, and also grew in a room temperature environment.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Judas_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-06-20T16:33:39-04:00", "date_modified": "2020-09-17T14:06:09-04:00" }, { "phage_name": "Jude", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Hey Jude, a song by the Beatles", "finder_name": "Hope Bodnar", "found_city": "Bismarck", "found_state": "ND", "found_country": "USA", "found_GPS_lat": "46.7598 N", "found_GPS_long": "100.759 W", "found_year": 2018, "p_institution": { "institution_code": "UMRY", "institution_name": "University of Mary", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfMary.jpg", "institution_url": "http://www.umary.edu/", "institution_city": "Bismarck", "institution_state": "ND", "institution_country": "USA", "institution_latitude": "46.721954", "institution_longitude": "-100.7531" }, "enriched_sample": null, "discovery_notes": "Found out in the country, on ground level", "isolation_temperature": 7, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-26T10:08:59-05:00", "date_modified": "2020-09-17T14:09:54-04:00" }, { "phage_name": "Judebell", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Edoardo Miranda Colombo", "found_city": "QUINCY", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.27195 N", "found_GPS_long": "71.01153 W", "found_year": 2023, "p_institution": { "institution_code": "ENZC", "institution_name": "Eastern Nazarene College", "institution_logo": "https://phagesdb.org/media/institutions/eastern_nazarene.png", "institution_url": "https://enc.edu/", "institution_city": "Quincy", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Direct isolation from grass", "isolation_temperature": 28, "growth_notes": "", "pcluster": { "cluster": "EG", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-01-08", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 715, "finishing_reactions": 0, "genome_length": 61786, "gcpercent": "67.0", "end_type": "TREP", "repeat_length": 204, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 105, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Judebell_CompleteNotes.xlsx", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Judebell_Minimal_Final_SbHAFjp.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Judebell_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Judebell_CoverSheet.docx", "submitted_annotation_date": "2024-06-18T11:59:29-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Judebell_flat_JZfh0q9.txt", "qced_genbank_file_date": "2024-06-18T11:59:29-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PP946909", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Judebell_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Judebell.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/final-image.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/final-image_4.jpg", "dnam_file": null, "date_added": "2023-10-26T10:32:07-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "JudeDuarte", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I chose this name from the main character from The Cruel Prince series which I adored. I thought it appropriate because she and my phage are fighters and are often falsely viewed as villains.", "finder_name": "Mirna Younan", "found_city": "Old Westbury", "found_state": "NY", "found_country": "United States of America", "found_GPS_lat": "40.800918 N", "found_GPS_long": "73.5764 W", "found_year": 2024, "p_institution": { "institution_code": "SUOW", "institution_name": "SUNY Old Westbury", "institution_logo": "https://phagesdb.org/media/institutions/SUNYOldWestbury.png", "institution_url": "https://www.oldwestbury.edu/", "institution_city": "Old Westbury", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "40.782786", "institution_longitude": "-73.57952" }, "enriched_sample": true, "discovery_notes": "The soil was collected from forest land beside Woodlands Hall 5 in the SUNY Old Westbury campus. The temperature that day was 29 degrees Celsius. It was recorded that the day before there was no rain. The soil was a very dark brown and was rough and dry. It was collected from the surface under some leaves and close to grass lawns.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques were very concentrated, almost all of which were around 1 millimeter or smaller. They were round with defined edges. These did not have halos around them, so they are most likely lytic phages and not lysogenic.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JudeDuarte_Plaque_rwMeNci.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-28T09:06:44-04:00", "date_modified": "2025-04-04T11:37:43-04:00" }, { "phage_name": "JudgeJudy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named our phage JudgeJudy because it reminded us of the strict rules we needed to follow to be successful in this class (such as attentive isolation, proper sterilization, and attention to detail). We're sure Judge Judy herself needs to be attentive to the little things in life, just like we did. We're sure she would be so proud knowing there's now a phage named after her.", "finder_name": "Derek Hanson & Ava Marburger", "found_city": "Moorhead", "found_state": "MN", "found_country": "United States", "found_GPS_lat": "46.7953 N", "found_GPS_long": "96.8293 W", "found_year": 2021, "p_institution": { "institution_code": "MSUM", "institution_name": "Minnesota State University Moorhead", "institution_logo": "https://phagesdb.org/media/institutions/MSUM.png", "institution_url": "https://www.mnstate.edu/", "institution_city": "Moorhead", "institution_state": "MN", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "This soil came from near the building of the social worker Kristin Moen's building (891 Belsly Blvd, Moorhead, MN 56560). There was a clump of soil right be the flowers on the East side of the building below a white windowframe on a red-bricked wall. We did not dig very deep for the soil; the soil was piled and was extracted fairly easily.", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JudgeJudy_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/JudgeJudy_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-29T15:00:33-04:00", "date_modified": "2024-04-30T07:30:27-04:00" }, { "phage_name": "Judilia", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Both of our aunt's names combined.", "finder_name": "Marisa Boras and Heather Handy", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.66679 S", "found_GPS_long": "117.403024 E", "found_year": 2015, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Tail = 190nm\r\nCapsid = 90 nm\r\n(280nm altogether)", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Titer: 6.0x10^7 pfu/mL (03/24/15)\r\nSize: 6mm\r\nTurbid\r\n\r\n(from our 10^-5 dilution)", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Judilia_Plaque.tiff", "em_file": "https://phagesdb.org/media/emPics/Judilia_EMPic_1.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Judilia_Plaque_Thumb.png", "dnam_file": null, "date_added": "2015-03-27T10:12:00-04:00", "date_modified": "2020-09-17T14:06:57-04:00" }, { "phage_name": "Judith", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Judith is the slayer of the Assyrian general Holofernes and as such has been depicted numerous times throughout art history.", "finder_name": "Clancy Brooks", "found_city": "Providence", "found_state": "RI", "found_country": "USA", "found_GPS_lat": "41.8239 N", "found_GPS_long": "71.4037 E", "found_year": 2016, "p_institution": { "institution_code": "BRWN", "institution_name": "Brown University", "institution_logo": "https://phagesdb.org/media/institutions/brown_logo2.jpg", "institution_url": "http://www.brown.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.827013", "institution_longitude": "-71.40255" }, "enriched_sample": true, "discovery_notes": "The phage was collected from soil 2.5 cm beneath surface. The surrounding temperature was 23.9 degrees Celsius. It was found in the mud that shifts from the grassy section of the courtyard onto the sidewalk fairly regularly; the mud was in the grassy section when the sample was taken. The ground was slightly wet with some grass, rocks, and plant roots interspersed in the soil.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "There are slightly differing morphologies in which the phage manifests (one larger than the other by ~0.1 millimeters), but this can be caused by differing concentrations on different plates or may be a characteristic of the phage. The average size of the diameter of the phage is 2 millimeters.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-30T23:43:26-05:00", "date_modified": "2016-12-02T15:38:26-05:00" }, { "phage_name": "Judson", "old_names": "Humfrey", "program": null, "naming_notes": "", "finder_name": "Kelly Chandler", "found_city": "Claudville", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "36.555833 N", "found_GPS_long": "80.475 W", "found_year": 2020, "p_institution": { "institution_code": "RADF", "institution_name": "Radford University", "institution_logo": "https://phagesdb.org/media/institutions/RADF.png", "institution_url": "https://www.radford.edu/", "institution_city": "Radford", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "collected 2 inches below soil surface, ambient temperature=68 degrees Fahrenheit,1430 foot elevation", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/KC_TEM_Judson.jpg", "dnam_file": null, "date_added": "2020-11-10T09:38:13-05:00", "date_modified": "2021-01-28T11:04:38-05:00" }, { "phage_name": "Judy", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "I probably have a great aunt named Judy that I haven't seen in a while.", "finder_name": "Audrey Jonas", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.4418 N", "found_GPS_long": "79.9509 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "Soil was found beneath a shrub on what was probably private property. Soil was brown and clay-like.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "FA", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "clear, 1.5 mm plaques", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-09-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1045, "finishing_reactions": 0, "genome_length": 43440, "gcpercent": "65.2", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CGCCGGAGA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 72, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Judy_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-09-01T22:29:25-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Judy.gbf", "qced_genbank_file_date": "2018-09-01T22:29:25-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH834614", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Judy_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Judy.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Judy_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Judy.dnam5", "date_added": "2017-07-23T09:51:48-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Judylove", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Judylove given due to Judy's undying love for science and research ", "finder_name": "Alexandria Smart", "found_city": "Santa Cruz", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "36.98 N", "found_GPS_long": "122.02 W", "found_year": 2016, "p_institution": { "institution_code": "UCSC", "institution_name": "University of California, Santa Cruz", "institution_logo": "https://phagesdb.org/media/institutions/UCSC.jpg", "institution_url": "http://www.ucsc.edu/", "institution_city": "Santa Cruz", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "36.991665", "institution_longitude": "-122.0608" }, "enriched_sample": true, "discovery_notes": "This phage was isolated from San Lorenzo River sludge. Given this location, Judylove phage is especially applicable to infection of mycobacterium that may exist in nature. In this way, my phage can be applicable to mycobactericidal applications. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "Each perfectly round plaque occupies approximately 0.79 mm2 of area. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-12-08T23:41:17-05:00", "date_modified": "2016-12-08T23:41:17-05:00" }, { "phage_name": "Juggernaut", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Gail Larkin", "found_city": "Fredericksburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "37.6469 N", "found_GPS_long": "76.8325 W", "found_year": 2008, "p_institution": { "institution_code": "UMAW", "institution_name": "University of Mary Washington", "institution_logo": "https://phagesdb.org/media/institutions/MaryWashington.png", "institution_url": "http://www.umw.edu/", "institution_city": "Fredericksburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.301709", "institution_longitude": "-77.47360" }, "enriched_sample": true, "discovery_notes": "From soil, depth 4.5cm, down the hill from the Mary Washington Jepson Science Building. Soil was damp, gathered by a small stream. Small valley along a trail, next to a small stream, 84 ft elevation. 23°C\r\n\r\nMalcolm Moors isolated the same phage\r\n2008UMAWmalcMM they appear to be the same\r\n2008UMAWpandaEH\r\n2008UMAWdavidhaddadDH\r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Radius:1.75 mm, clear, incubated 37 degrees Celsius overnight", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/juggernaut_plaque.png", "em_file": "https://phagesdb.org/media/emPics/juggernaut_EM.png", "digest_file": "https://phagesdb.org/media/digestPics/juggernaut_digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/juggernaut_plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/juggernaut_EM_thumb.png", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Jughead", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We both enjoy watching the show Riverdale and one of the main characters, Jughead, was our favorite character ", "finder_name": "Cindy Hong, Taher Takliwala", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.945311 N", "found_GPS_long": "75.207252 W", "found_year": 2017, "p_institution": { "institution_code": "USPH", "institution_name": "University of the Sciences (now St. Joseph's Univ)", "institution_logo": "https://phagesdb.org/media/institutions/USciences.png", "institution_url": "https://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "39.947118", "institution_longitude": "-75.20724" }, "enriched_sample": true, "discovery_notes": "The sample was collected from underneath what appeared to be some type of berry bush. The dirt is directly located about one foot away from the base of the McNeil Science and Technology Center building. The ground was not sloped and the area does not seem to have been walked on as the dirt was directly beneath a bush that had branches that hung over the patch of dirt. \r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Our clearings were approximately 1mm in diameter and created clear plaques. From our EM images we have a siphoviridae phage since the tail was long.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jughead_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Jughead_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Jughead_Digest.JPG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jughead_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Jughead_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-11-12T21:09:08-05:00", "date_modified": "2020-09-17T14:08:00-04:00" }, { "phage_name": "Juhol", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This is my mother's maiden name.", "finder_name": "Alicia Gordon", "found_city": "Denton", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "33.11032 N", "found_GPS_long": "97.02635 W", "found_year": 2022, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "Collected soil sample from south eastern Denton, Texas. The temperature was about 75°F and it was extremely humid and sprinkling during collection. The location is by some trees located near Lake Lewisville. I dug around the top 3 inches of soil and placed in a plastic bag.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "My plaques are clear and circular, with a diameter of about 0.75 mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "bicolor", "strain_name": "NRRL B-3897", "strain_species": { "id": 74, "genus": "Streptomyces", "species_name": "bicolor", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 74, "genus": "Streptomyces", "species_name": "bicolor", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Juhol_Plaque.tif", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Juhol_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-10-20T08:56:27-04:00", "date_modified": "2024-02-25T15:28:06-05:00" }, { "phage_name": "Juice", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Cameron Nix came up for the name for this phage, he thought of it because it rhymed with Palouse.", "finder_name": "Secily Thompson and Cameron Nix", "found_city": "Pullman ", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.739833 N", "found_GPS_long": "117.164222 W", "found_year": 2017, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "The sample was found in Pullman Washington near the DABCO Emerald Down apartment complex B in a stagnant pond- like environment connected to a water drainage ditch. The sample was taken at 7:48 pm Sunday October 15, 2017. The ambient temperature was 36 degrees Fahrenheit and the depth of the sample was taken from the surface of the ground to approximately 2 inches below, and approximately 1.5 feet from the collection site there was a gate that kept most foot traffic out. However, there was a much used path by Washington State University students and Pullman residence. The soil was very damp and thick with a mud-like consistency, and there was some small rocks and pebbles present in the sample as well as some grass from the area (typically found in moist swamp-like environments, and found in most grassy yards). ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "small clear holes left in the agar infected with the host bacterium, and each plaque was small and very clear cut and circular.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Juice_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Juice_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-12-09T19:36:52-05:00", "date_modified": "2020-09-17T14:08:56-04:00" }, { "phage_name": "Juice456", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jourdin Jenkins", "found_city": "Orangeburg", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "41.051111 N", "found_GPS_long": "73.946944 W", "found_year": 2018, "p_institution": { "institution_code": "DCBL", "institution_name": "Dominican University New York", "institution_logo": "https://phagesdb.org/media/institutions/CV_DU_stacked_2022.png", "institution_url": "https://www.duny.edu/", "institution_city": "Orangeburg", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.039643", "institution_longitude": "-73.94976" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-11-26", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1895, "finishing_reactions": 0, "genome_length": 56726, "gcpercent": "61.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CCGATGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 102, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Juice456_CompleteNotes_OQctgrB.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Juice456_Minimal_Final_jhG7P0q.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Juice456_Authors_wrY33Gm.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Juice456_CoverSheet_nhCPF2E.pdf", "submitted_annotation_date": "2019-08-09T21:32:22-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Juice456_flat.txt", "qced_genbank_file_date": "2019-08-09T21:32:23-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN310548", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Juice456_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Juice456_EMPic.TIF", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Juice456.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Juice456_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Juice456_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-09-27T13:06:31-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Juicebox", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name comes from the hit movie Kicking and Screaming starring Will Ferrell and NFL Hall of Fame coach Mike Ditka. This movie was influential in our childhoods so we call our phage Juicebox to commemorate our separate but similar pasts.", "finder_name": "Aneesh Pathak and Ote Staton", "found_city": "Birmingham", "found_state": "AL", "found_country": "USA", "found_GPS_lat": "33.543682 N", "found_GPS_long": "86.779633 W", "found_year": 2017, "p_institution": { "institution_code": "UALB", "institution_name": "University of Alabama at Birmingham", "institution_logo": "https://phagesdb.org/media/institutions/uab-01.jpg", "institution_url": "http://www.uab.edu/", "institution_city": "Birmingham", "institution_state": "AL", "institution_country": "USA", "institution_latitude": "33.496744", "institution_longitude": "-86.80949" }, "enriched_sample": false, "discovery_notes": "Sewage influent. The isolation temperature was initially 30 C, but plaques took 72-120 hours to appear. When we moved to the 37 C temperature, the plaques appeared within 48 hours, so we continued to isolate/incubate at 37 C for the sake of time. ", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "Singleton", "temperate": null }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques are consistently small (0.5mm diameters) and cloudy. ", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-12-21", "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": 41394, "gcpercent": "67.9", "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGAGGGCAT", "sequencing_notes": "at position 3208 bp approximately 25% of reads contain an A instead of consensus G", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 59, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Juicebox_Minimal_Final_GII47DH.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-07-31T21:59:50-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Juicebox_flat_pcCejTK.txt", "qced_genbank_file_date": "2018-07-31T21:59:50-04:00", "isolation_host": { "genus": "Corynebacterium", "species": "xerosis", "strain_name": "ATCC 373", "strain_species": { "id": 65, "genus": "Corynebacterium", "species_name": "xerosis", "species_genus": { "id": 7, "genus_domain": "Bacteria", "genus_name": "Corynebacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "373", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 65, "genus": "Corynebacterium", "species_name": "xerosis", "species_genus": { "id": 7, "genus_domain": "Bacteria", "genus_name": "Corynebacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 7, "genus_domain": "Bacteria", "genus_name": "Corynebacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH727550", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Juicebox_Plaque_awAGBwr.jpg", "em_file": "https://phagesdb.org/media/emPics/Juicebox_EMPic_eceBnWm.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Juicebox.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Juicebox_Plaque_Thumb_7WbiyNk.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Juicebox_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-11-09T08:17:25-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Juiceman", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My team and I thought the name \"Juiceman\" was unique and catchy.", "finder_name": "Jad Salem, Noah Kane, Seth Moore, Christian Hender", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.388986 N", "found_GPS_long": "72.523259 W", "found_year": 2023, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found on the UMass Campus", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/juiceman_plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/juiceman_empic_thumb.png", "dnam_file": null, "date_added": "2023-03-24T08:20:05-04:00", "date_modified": "2024-10-03T12:08:37-04:00" }, { "phage_name": "Juicer", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Julieris and Spencer worked on the purification together during COVID. Juicer is a mash-up of their names.", "finder_name": "Julieris Payero Nunez", "found_city": "Lynn", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.470743 N", "found_GPS_long": "70.947233 W", "found_year": 2020, "p_institution": { "institution_code": "SALM", "institution_name": "Salem State University", "institution_logo": "https://phagesdb.org/media/institutions/SALM.png", "institution_url": "https://www.salemstate.edu/", "institution_city": "Salem", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The temperature was approximately 26ºC/79ºF.\r\nThe soil was dry and with pieces of small branches", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "EA", "temperate": false }, "psubcluster": { "subcluster": "EA6" }, "morphotype": "SIPHO", "plaque_notes": "5mm diameter cloudy with 2mm diameter clear center.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-01-07", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 4156, "finishing_reactions": 0, "genome_length": 41099, "gcpercent": "62.8", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 63, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Juicer_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Juicer_Minimal_Final_SaZKhfv.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Juicer_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Juicer_CoverSheet.pdf", "submitted_annotation_date": "2021-07-16T10:11:58-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Juicer_Flat.txt", "qced_genbank_file_date": "2021-07-16T10:11:58-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MZ622175", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Juicer_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Juicer_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Juicer.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Juicer_plaque.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Juicer-thumb.jpg", "dnam_file": null, "date_added": "2020-12-02T15:10:16-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Juicy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Isabel Gil and Amanda Keller", "found_city": "Pullman", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "46.73068 N", "found_GPS_long": "117.16664 W", "found_year": 2022, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "The soil was wet. On a college campus where there is a lot of foot traffic and presence of vehicles.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Juicy_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Juicy_Digest.HEIC", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-12-01T08:42:03-05:00", "date_modified": "2022-12-08T08:34:23-05:00" }, { "phage_name": "JuicyFruit", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of our phage was approved by our Teaching Assistant for our lab section.", "finder_name": "Madison Walter and Aliya Staight", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.729644 N", "found_GPS_long": "117.16378 W", "found_year": 2018, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "Sample was taken on September 27th, 2018. The soil came from a patch underneath a tree between the Fulmer and Todd buildings on the Washington State University campus. There is high foot traffic in this area. The soil was from around 1 cm deep and was dry.", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-12-07T20:52:37-05:00", "date_modified": "2020-09-17T14:09:44-04:00" }, { "phage_name": "JuicyJay", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage is predicted to be of cluster J. A musical artist has a similar name, but spelled differently, and declined the invitation to have phage named after him.", "finder_name": "Emmett Askira", "found_city": "Providence", "found_state": "RI", "found_country": "USA", "found_GPS_lat": "41.828991 N", "found_GPS_long": "71.399643 W", "found_year": 2015, "p_institution": { "institution_code": "BRWN", "institution_name": "Brown University", "institution_logo": "https://phagesdb.org/media/institutions/brown_logo2.jpg", "institution_url": "http://www.brown.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.827013", "institution_longitude": "-71.40255" }, "enriched_sample": false, "discovery_notes": "Soil originated from a planter on the Southeast corner of Brook and Meeting streets that contained a mixture of soil and mulch, with some roots. The sample was drawn from the surface to about 3cm of depth. The temperature at the time of collection was 21C. JuicyJay was found using direct plating.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "J", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are cloudy, and of widely variable size. In some, the cloudiness is evenly distributed in a ring, while in others there is a tail, resembling a short comet's tail of cloudiness in one direction, while the other edge is fairly defined. Plaques range from less than 0.5mm diameter to a maximum around 4mm.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-01-15", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1007, "finishing_reactions": 0, "genome_length": 113075, "gcpercent": "60.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 4, "overhang_sequence": "ATCC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 235, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JuicyJay_CompleteNotes_O2zxz39.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JuicyJay_Minimal_Final_YDHxS1f.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/JuicyJay_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/JuicyJay_CoverSheet.pdf", "submitted_annotation_date": "2021-08-21T17:15:18-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/JuicyJay_flat_a7E0m80.txt", "qced_genbank_file_date": "2021-08-21T17:15:18-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MZ958748", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JuicyJay_Plaque_2IpQNzF.jpg", "em_file": "https://phagesdb.org/media/emPics/JuicyJay_EMPic_rlgBT3Z.jpg", "digest_file": "https://phagesdb.org/media/digestPics/JuicyJay_Digest_pe6j3iC.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/JuicyJay.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JuicyJay_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/JuicyJay_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-12-04T13:56:38-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "JuicyP", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "JuicyP was named after our favorite rapper Juice wrld. We got the inspiration for our phage name from him.", "finder_name": "Sam Arellano and Carter Rodny", "found_city": "Boulders", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "39.490012 N", "found_GPS_long": "104.894204 W", "found_year": 2019, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": false, "discovery_notes": "JuicyP was isolated from soil found between the roots of a spruce tree in a suburban area of Castle Rock, Colorado.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "A plaque assay of JuicyP produced clear plaques with a diameter of 1-3 mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JuicyP_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/JuicyP_EMPic.jpeg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JuicyP_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/JuicyP_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-04-26T12:21:45-04:00", "date_modified": "2021-01-28T11:04:25-05:00" }, { "phage_name": "JuicyStar", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Casey Lashley, Nina Ngo, Liz van der Torre", "found_city": "CRETE", "found_state": "NE", "found_country": "United States", "found_GPS_lat": "40.621488 N", "found_GPS_long": "96.948725 W", "found_year": 2019, "p_institution": { "institution_code": "DOAN", "institution_name": "Doane University", "institution_logo": "https://phagesdb.org/media/institutions/DoaneMod.png", "institution_url": "http://www.doane.edu/", "institution_city": "Crete", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.623191", "institution_longitude": "-96.95035" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Consistently formed clear plaques about 1mm in diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JuicyStar_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/JuicyStar_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JuicyStar_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/JuicyStar_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-12-12T08:52:21-05:00", "date_modified": "2020-09-17T14:11:36-04:00" }, { "phage_name": "JuicyToflo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Victoria Maldonado, Briana Pope", "found_city": "Charleston", "found_state": "SC", "found_country": "USA", "found_GPS_lat": "32.794157 N", "found_GPS_long": "79.947528 W", "found_year": 2017, "p_institution": { "institution_code": "CCHA", "institution_name": "College of Charleston", "institution_logo": "https://phagesdb.org/media/institutions/cofc_logo_red.jpg", "institution_url": "http://www.cofc.edu/", "institution_city": "Charleston", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "32.783974", "institution_longitude": "-79.93820" }, "enriched_sample": null, "discovery_notes": "Elliotburough #2 compost pile", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-17T22:19:01-05:00", "date_modified": "2021-10-15T14:03:20-04:00" }, { "phage_name": "Juji", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Juji is the name of a group member's cat.", "finder_name": "J. Donovan, L. Champoux, B. Ambroise, S. Caponigro", "found_city": "Amherst", "found_state": "MA", "found_country": "United States of America", "found_GPS_lat": "42.391403 N", "found_GPS_long": "72.526736 W", "found_year": 2025, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "This phage was found outside of the Student Union building on the UMass Amherst campus. The soil was mulchy and frozen over at the time.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "This phage is less than one millimeter in diameter with a bullseye morphology and fuzzy edges.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-03-25T15:27:23-04:00", "date_modified": "2025-03-25T15:27:23-04:00" }, { "phage_name": "JuJu", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Lauren Callewaert", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "", "found_GPS_lat": "40.443889 N", "found_GPS_long": "79.960833 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "The soil sample was collected from an area of dark, soft soil that had woodchips on top of the soil collected. There were also bushes growing around the area from which the soil was collected. The temperature was around 30 degrees Fahrenheit when it was collected.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "CV", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-09-29", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 923, "finishing_reactions": 0, "genome_length": 54000, "gcpercent": "66.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "TGGCCGGTGA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 88, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JuJu_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JuJu_Minimal_Final_ycJzPn3.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/JuJu_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/JuJu_CoverSheet.pdf", "submitted_annotation_date": "2019-05-31T14:46:53-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/JuJu_flat.txt", "qced_genbank_file_date": "2019-05-31T14:46:53-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN062704", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/JuJu_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/JuJu.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Plaque_200X200.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/JuJu_EM_200X200.jpg", "dnam_file": null, "date_added": "2017-02-22T21:59:07-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Jujubee", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My good friends nickname. She was so excited to hear about the types of experiments we get to do in the lab so I figured it would be fun for her to have a phage named after her.", "finder_name": "Megan Robinhold and Shunyu Yao", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.014984 N", "found_GPS_long": "105.270546 W", "found_year": 2019, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "Found outside Kappa Kappa Gamma on a windy day from the front garden.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Moderately cloudy \r\nTemperate\r\n6mm diameter\r\nNo bulls-eye", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jujubee_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Jujubee_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Jujubee_Digest_XIQAhB6.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jujubee_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-12-04T10:28:53-05:00", "date_modified": "2021-01-28T11:04:25-05:00" }, { "phage_name": "Juka", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for this phage came from the combination of lab partners names who discovered it. ", "finder_name": "Kalley Ladwig", "found_city": "Kenosha", "found_state": "WI", "found_country": "", "found_GPS_lat": "47.371 N", "found_GPS_long": "87.4913 W", "found_year": 2018, "p_institution": { "institution_code": "CRTH", "institution_name": "Carthage College", "institution_logo": "https://phagesdb.org/media/institutions/Carthage-vert-2c.png", "institution_url": "http://www.carthage.edu/", "institution_city": "Kenosha", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "42.624596", "institution_longitude": "-87.81996" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-12T16:42:05-04:00", "date_modified": "2020-09-17T14:09:47-04:00" }, { "phage_name": "Jukes", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Amanda Wellmann", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "29.80842 S", "found_GPS_long": "31.031249 E", "found_year": 2012, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Isolated from moist soil in the River bed of the Umgeni River, Kwa-Zulu Natal, South Africa. The soil sample was taken from a depth of 2-5cm.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small to medium sized plaques with slightly varying sizes. Plaques were clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jukes_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jukes_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2012-07-20T05:59:57-04:00", "date_modified": "2017-09-24T10:37:45-04:00" }, { "phage_name": "Jules", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My instructor called me Jules instead of Josh accidentally, and the nickname has continued.", "finder_name": "Joshua Heuler", "found_city": "Tampa", "found_state": "FL", "found_country": "USA", "found_GPS_lat": "28.020024 N", "found_GPS_long": "82.386947 W", "found_year": 2017, "p_institution": { "institution_code": "USFL", "institution_name": "University of South Florida", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofSouthFlorida.jpg", "institution_url": "http://www.usf.edu/", "institution_city": "Tampa", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "28.058438", "institution_longitude": "-82.41395" }, "enriched_sample": false, "discovery_notes": ".Collected along Hillsborough river\r\n.Soil had buildup of cypresss leaves, sticks, duckweed in area\r\n.Stagnant water nearby, damp soil\r\n.Soil had sulfurous odor\r\n.Soil depth of 1-2 inches\r\n.Found at River Hills Park, S Riverhills Drive\r\nTampa, FL\r\n", "isolation_temperature": 27, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "Small\r\nSlow-growing\r\nLytic", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jules_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Jules_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jules_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Jules_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-10-30T11:08:07-04:00", "date_modified": "2020-09-17T14:08:05-04:00" }, { "phage_name": "Jules2", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name \"Jules2\" is due to my newest sons name being Julian. We call him Jules, and he is a \"little guy\", so thought it to be a good name for another \"little guy\". This will be my Jules2.", "finder_name": "Brian Boring", "found_city": "Pt St Lucie", "found_state": "FL", "found_country": "USA", "found_GPS_lat": "27.371639 N", "found_GPS_long": "80.389056 W", "found_year": 2015, "p_institution": { "institution_code": "IRSC", "institution_name": "Indian River State College", "institution_logo": "https://phagesdb.org/media/institutions/logo_irsc2.png", "institution_url": "http://www.irsc.edu/", "institution_city": "Fort Pierce", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "27.423570", "institution_longitude": "-80.35789" }, "enriched_sample": null, "discovery_notes": "Found off the side of the road near a little ditch to the south of NW Conley Dr and East Torino Pkwy. The temp was 89.6 degrees F. The sand was moist. Collected 30 ft off the rd.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque morphology is clear, multiple, small-medium sized, halo shaped/circular plaqes.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jules2_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Jules2_Digest.html", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-12-06T18:34:17-05:00", "date_modified": "2020-09-17T14:06:30-04:00" }, { "phage_name": "JulesRay", "old_names": "CatDog", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We like cats and dogs.\r\nFormal name is the first two letters from all of our names put together.", "finder_name": "Raven English", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.445983 N", "found_GPS_long": "79.953041 W", "found_year": 2024, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Raven English \r\nSydney Ferland \r\nJulia Coelho \r\nLexi Popma \r\nBiology 2 Lab", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "DJ", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-07-02", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3844, "finishing_reactions": 0, "genome_length": 59943, "gcpercent": "51.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CGCCGCTCT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 92, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JulesRay_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2025-06-30T10:37:36-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/JulesRay_flat.txt", "qced_genbank_file_date": "2025-06-30T10:37:36-04:00", "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PV915826", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/JulesRay_EMPic.jpeg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/JulesRay.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/JulesRay200.jpg", "dnam_file": null, "date_added": "2024-02-07T10:47:16-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "JulesWinnfield", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kodak Plaque was unavailable so i picked a character from one of my favorite movies, Pulp Fiction, Samuel L. Jackson's character, Jules Winnfield. ", "finder_name": "Raines Warren", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.924917 N", "found_GPS_long": "77.020557 W", "found_year": 2016, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "Using a plastic spoon and a sandwich bag, a soil sample was collected from the south wall of William H. Greene Stadium on Howard University campus on September 12th, 2016. (38.9249171 N, -77.0205566 W) Hopefully a sample containing bacteriophages.\r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "After the enrichment, the plaques were highly visible. They were large plaques about 3mm in diameter. They were lytic so the plaques were clear. No turbidity present.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-16T22:17:55-05:00", "date_modified": "2017-10-31T20:20:22-04:00" }, { "phage_name": "Julia", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is a cross between both of the discoverers name. ", "finder_name": "Jewel Ito and Dahlia Shtaih", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.67 N", "found_GPS_long": "117.4 W", "found_year": 2018, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Found in damp soil by Lake Arthur about a foot from the water. ", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "Our plaque has a variety of plaques ranging from small to medium. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Julia_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Julia_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Julia_Plaque.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Julia_EMPic_Thumb.png", "dnam_file": null, "date_added": "2018-11-08T22:51:25-05:00", "date_modified": "2020-09-17T14:10:48-04:00" }, { "phage_name": "JuliaChild", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Julia Malnak", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.439248 N", "found_GPS_long": "79.958997 W", "found_year": 2021, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A1" }, "morphotype": "SIPHO", "plaque_notes": "Medium sized plaques with dark halo and concentric dark centers.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-10-29", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1402, "finishing_reactions": 0, "genome_length": 52229, "gcpercent": "63.5", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGATGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 91, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JuliaChild_CompleteNotes.xlsx", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JuliaChild_Minimal_Final_I305wfh.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/JuliaChild_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/JuliaChild_CoverSheet.docx", "submitted_annotation_date": "2023-08-13T10:48:54-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/JuliaChild_flat_dHLYzXE.txt", "qced_genbank_file_date": "2023-08-13T10:48:54-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OR475285", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JuliaChild_Plaque.tif", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/JuliaChild.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-06-17T09:17:34-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Juliage", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Epoh Fonge", "found_city": "Downingtown", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.0268 N", "found_GPS_long": "75.6903 E", "found_year": 2018, "p_institution": { "institution_code": "CABR", "institution_name": "Cabrini University", "institution_logo": "https://phagesdb.org/media/institutions/Cabrini-01.jpg", "institution_url": "http://www.cabrini.edu/", "institution_city": "Radnor", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.055648", "institution_longitude": "-75.37448" }, "enriched_sample": true, "discovery_notes": "This bacteriophage was isolated from a sample of soil dug under a tree.", "isolation_temperature": 60, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Juliage_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Juliage_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-06-07T13:31:54-04:00", "date_modified": "2020-09-17T14:10:16-04:00" }, { "phage_name": "Julialynn", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage was selfishly named after myself, mostly because my dog's name was already used by another phage.", "finder_name": "Julia Swarthout", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.4457 N", "found_GPS_long": "79.9538 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "This phage was collected from directly next to a plants roots, outside of Clapp Hall on the University of Pittsburgh's campus. The soil had fertilizer beads in it, and was very moist and dark colored. It was raining the day of collection, as well as the days before collection.", "isolation_temperature": 5, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques produced by phage Julialynn are extremely small, less than 2mm in diameter, are fairly circular, and are completely translucent. ", "lysogeny_notes": "Phage Julialynn does not enter a lysogenic cycle.", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Julialynn_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Julialynn_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-02-07T17:18:15-05:00", "date_modified": "2020-09-17T14:08:31-04:00" }, { "phage_name": "Julian", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jahann Lowe", "found_city": "Whitefield", "found_state": "ME", "found_country": "USA", "found_GPS_lat": "44.753691 N", "found_GPS_long": "69.56591 W", "found_year": 2018, "p_institution": { "institution_code": "UMHC", "institution_name": "University of Maine, Honors College", "institution_logo": "https://phagesdb.org/media/institutions/crest-umaine-honors.jpg", "institution_url": "http://www.honors.umaine.edu/", "institution_city": "Orono", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "44.897979", "institution_longitude": "-68.66874" }, "enriched_sample": true, "discovery_notes": "This phage was discovered 1\" below the surface of a potted plant at a temperature of 76 degrees Fahrenheit on September 6, 2018 in Whitefield, Maine. ", "isolation_temperature": 24, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques began to appear often at a 10^-6 dilution. They appeared clear, with slight halo-like rings around the edges, and were approximately 2-3 mm in diameter. ", "lysogeny_notes": "Julian has a rate of lysogeny of 18.42%. When an immunity assay on Gordonia terrae 3612 bacteriophage Wakko was conducted there were no plaques formed. ", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Julian_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Julian_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Julian_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Julian_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Julian_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-10-08T15:33:28-04:00", "date_modified": "2020-09-17T14:10:13-04:00" }, { "phage_name": "Julie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We wanted a name that sounded like a person's name, so when people referred to our phage it would be like referring to a person. Julie was the first person-name we thought of.", "finder_name": "Milana Pham, Miguel Bravo-Leos", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.66591 N", "found_GPS_long": "117.4058 W", "found_year": 2024, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Found near a lake in wood-like media, in late August.", "isolation_temperature": 21, "growth_notes": "", "pcluster": { "cluster": "FF", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The typical size diameter of a plaque after one week of incubation is around a half a centimeter. The edges of the plaques are turbid, and typically only the very middle is completely clear. There is typically a ring of bacterial regrowth on our plaques. The most recent full plate titer was calculated to be 6.8 x 10^9 plaque forming units per milliliter.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-01-13", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 4534, "finishing_reactions": 0, "genome_length": 42682, "gcpercent": "65.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 12, "overhang_sequence": "TCCGCCGCGTGA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 65, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Julie_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2025-08-05T12:11:32-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Julie_flat.txt", "qced_genbank_file_date": "2025-08-05T12:11:32-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PX121522", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Julie_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Julie_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Julie.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Julie_Plaquemorphology_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Julie_TEM_Thumb.png", "dnam_file": null, "date_added": "2024-10-17T09:46:06-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "JulieBear", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My name combined with the nickname I gave the cute phage", "finder_name": "Paityn Schabes", "found_city": "Kenosha", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "42.620824 N", "found_GPS_long": "87.821393 E", "found_year": 2017, "p_institution": { "institution_code": "CRTH", "institution_name": "Carthage College", "institution_logo": "https://phagesdb.org/media/institutions/Carthage-vert-2c.png", "institution_url": "http://www.carthage.edu/", "institution_city": "Kenosha", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "42.624596", "institution_longitude": "-87.81996" }, "enriched_sample": null, "discovery_notes": "Soil from a flower bed outside of Henry Denhart Hall. Dug down between 1 and 6 inches and took sample from multiple layers.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "clear, small plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JulieBear_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/JulieBear_EMPic.JPG", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/JulieBear_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-10-20T15:00:10-04:00", "date_modified": "2020-09-17T14:09:11-04:00" }, { "phage_name": "JulieH1", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Cayla Nistler", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.669 N", "found_GPS_long": "117.4 W", "found_year": 2016, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Was obtained next to a tree and phage Cayla was very similar to mine, the difference was in the room temperature growth of M.smeg. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Was cloudy around the plaques and was were all similar size ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-07-11T16:26:40-04:00", "date_modified": "2020-09-17T14:07:37-04:00" }, { "phage_name": "JulietS", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named our phage Juliet after our TA who was an instrumental part in helping us complete our student driven experiments and succeed in this course.", "finder_name": "Amay Shah", "found_city": "Los Angeles", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "34.06329 N", "found_GPS_long": "118.45 W", "found_year": 2022, "p_institution": { "institution_code": "UCLA", "institution_name": "University of California, Los Angeles", "institution_logo": "https://phagesdb.org/media/institutions/UCLA.jpg", "institution_url": "http://www.ucla.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "AL Quarter and Lab section: F22-1B \r\nInstructor: Tejas Bouklas \r\nTeaching Assistant: Juliet Stephenson\r\nUndergraduate Assistant(s): Yuri Lin, Trinity Vu \r\n\r\nTeam #1 Name: Plaquagonia \r\nTeam #1 Members: Angus Wu, Alexis Barrera, Amay Shah, Muskaan Sandhu\r\n\r\nTeam #2 Name: Love Your Cell’f\r\nTeam #2 Members: Andrea Chupina Estrada, Jessica Buch, Marlene Amador Mata, Fadi Albanaa\r\n\r\nTeam #3 Name: The Phresh Phage of Bel Air\r\nTeam #3 Members: Marissa Newman, Pedro Bazan, Geethika Janga, Saineha Maddineni", "isolation_temperature": 35, "growth_notes": "", "pcluster": { "cluster": "C", "temperate": false }, "psubcluster": { "subcluster": "C1" }, "morphotype": "MYO", "plaque_notes": "Clear, round, pinpoint. 1.5 mm diameter.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2022-12-08", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 590, "finishing_reactions": 0, "genome_length": 153525, "gcpercent": "64.7", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 223, "num_tRNAs": 32, "num_tmRNAs": 1, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JulietS_CompleteNotes.txt", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JulietS_Minimal_Final_AgTcbNc.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/JulietS_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/JulietS_CoverSheet.pdf", "submitted_annotation_date": "2025-07-08T20:45:38-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/JulietS_flat.txt", "qced_genbank_file_date": "2025-07-08T20:45:38-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PV940998", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/JulietS.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JulietS_Plaque_Thumb1.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/JulietS_EMPic_Thumb1.jpg", "dnam_file": null, "date_added": "2022-11-29T08:27:26-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Juliette", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage was named after Juliette from Romeo and Juliette as the literary Juliette tends to leave a wake of death behind her which is appropriate for a virus.", "finder_name": "Laura Johnson", "found_city": "Holland", "found_state": "MI", "found_country": "USA", "found_GPS_lat": "42.78 N", "found_GPS_long": "86.1 W", "found_year": 2012, "p_institution": { "institution_code": "HOPE", "institution_name": "Hope College", "institution_logo": "https://phagesdb.org/media/institutions/Hope.jpg", "institution_url": "http://www.hope.edu/", "institution_city": "Holland", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.788980", "institution_longitude": "-86.10404" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "K", "temperate": true }, "psubcluster": { "subcluster": "K4" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2019-08-08", "seq_facility": { "short_name": "HOPE", "facility_name": "Hope College", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 37, "finishing_reactions": 0, "genome_length": 58071, "gcpercent": "67.5", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CTCGCGGCCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 96, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Juliette_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Juliette_Minimal_Final_FpBoIWJ.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Juliette_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Juliette_CoverSheet.pdf", "submitted_annotation_date": "2021-02-10T13:59:34-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Juliette.gbf", "qced_genbank_file_date": "2021-02-10T13:59:34-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MW601218", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Juliette_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Juliette_EMPic_2.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Juliette_Digest.JPG", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Juliette.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Juliette_Plaque_Thumbs.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Juliette_EMPic_Thumbs.jpg", "dnam_file": null, "date_added": "2012-11-29T14:06:15-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Julio", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kellyn Wilkes", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.44371 N", "found_GPS_long": "79.955414 W", "found_year": 2013, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "This phage has a ring morphology that is cloudy. Depending on the plate, it is sometimes inside the plaque, or outside the plaque.", "lysogeny_notes": "This phage does have a lysogen. Out of the phage tested, it has only prevented phage Gibby from infecting.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Julio_Plaque_1.tiff", "em_file": "https://phagesdb.org/media/emPics/Julio_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Julio_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Julio_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2013-09-23T12:55:06-04:00", "date_modified": "2020-07-27T13:56:17-04:00" }, { "phage_name": "Julisa", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named this phage after myself.", "finder_name": "Julisa Bearhart", "found_city": "Lake Elmo", "found_state": "MN", "found_country": "United States of America", "found_GPS_lat": "45.0087 N", "found_GPS_long": "93.90136 W", "found_year": 2022, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "This phage was originally discovered by Myles Ligtenberg. He described the soil as dry and hard. It rained shorty before his sample was collected.", "isolation_temperature": 29, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "My plates contained tiny dots that had a small range of variation in size. They are clear and contain no halo. They expand slightly in size if given more room to grow, however they normally stay fairly small.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NRRL B-14843", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Julisa_Plaque.PNG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-10-13T08:41:07-04:00", "date_modified": "2024-02-25T15:27:57-05:00" }, { "phage_name": "Julius", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My phage is named Julius after the great Julius Caesar.", "finder_name": "Emily Forster", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.326189 N", "found_GPS_long": "76.616955 E", "found_year": 2012, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": null, "discovery_notes": "The soil sample was taken from right under a tomato plant. The soil was damp, but not moist and I dug about 4 centimeters down to get it.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B2" }, "morphotype": "MYO", "plaque_notes": "The morphology has plaques about 2mm in diameter with a fuzzy outer ring when in low density. The higher the concentration, the smaller the plaques.", "lysogeny_notes": "My phage is a lysogen.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Julius_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Julius_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Julius_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Julius_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Julius_EMPic_Thumbs.png", "dnam_file": null, "date_added": "2012-12-09T08:14:44-05:00", "date_modified": "2020-09-17T14:05:57-04:00" }, { "phage_name": "JuliusCaesar", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the famed Julius Caesar because this phage conquers all bacteria it comes into contact with.", "finder_name": "Zach Bebar, Ian Welsh", "found_city": "West Lafayette", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "86.91 W", "found_year": 2019, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": false, "discovery_notes": "Collected from underneath the bushbed\r\nUrban location, however, no sign of artificial modification of the site", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Small plaques, hazy halo, multiple in same area", "lysogeny_notes": "Lytic phage type", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JuliusCaesar_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/JuliusCaesar_EMPic.PNG", "digest_file": "https://phagesdb.org/media/digestPics/JuliusCaesar_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JuliusCaesar_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-03T15:13:31-04:00", "date_modified": "2020-09-17T14:11:36-04:00" }, { "phage_name": "JuliusD", "old_names": "JuliusD18", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The person who took the soil sample was Caesar, so we renamed it to Julius as a creative renaming. The \"D\" is for Caesar's last name \"De La Fuente\". 18 is for the year it was discovered, 2018.", "finder_name": "Caesar De La Fuente, Emily Morton, Calvin Ha", "found_city": "La Jolla", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "32.87339 N", "found_GPS_long": "117.240843 W", "found_year": 2018, "p_institution": { "institution_code": "UCSD", "institution_name": "University of California, San Diego", "institution_logo": "https://phagesdb.org/media/institutions/UCSD.png", "institution_url": "http://www.ucsd.edu/", "institution_city": "San Diego", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "32.880335", "institution_longitude": "-117.2340" }, "enriched_sample": true, "discovery_notes": "Soil sample for phage was located on the campus of UC San Diego nearby Galbraith Hall of Revelle college. The soil was three inches below the topsoil and was moist with many roots (later extracted). This was an area where landscapers consistently groom and spray pesticides, but is also constantly watered.", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques were all small, about the size of a pencil tip, yet there were always numerous and very clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JuliusD18_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JuliusD18_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-28T13:18:11-05:00", "date_modified": "2020-09-17T14:09:42-04:00" }, { "phage_name": "Juliusthree", "old_names": "JuliusTheThird", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We agreeed that we wanted a king name and then something with Roman numerals. Brendan wanted the roman numerals and Carley wanted a king-esque name. Thus, we combined both needs and made Juliusthree.", "finder_name": "Brendan Jewell and Carley Fendell", "found_city": "Olympia", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667013 N", "found_GPS_long": "112.40283 W", "found_year": 2018, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "GPS coordinates:\r\n47.667013 N\r\n112.40283 W\r\n", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Tail=0.7 inches\r\nApprx 83.3 nm\r\nTail +capsid=1.2 inches,\r\nApprx 125 nm\r\n\r\nSiphoviridae\r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Juliusthree_Plaque.pdf", "em_file": "https://phagesdb.org/media/emPics/Juliusthree_EMPic_tdQLTXg.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Juliusthree_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Juliusthree_EMPic_Thumb.png", "dnam_file": null, "date_added": "2018-11-15T22:18:07-05:00", "date_modified": "2020-09-17T14:10:48-04:00" }, { "phage_name": "Julualmavy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named our phage Julualmavy because it is the first two letters of all of our team members names so we thought it would be fitting to all be represented in the name of our phage.", "finder_name": "Raisa Mathenge", "found_city": "Alta Loma", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "34.123556 N", "found_GPS_long": "117.546328 W", "found_year": 2021, "p_institution": { "institution_code": "UCLA", "institution_name": "University of California, Los Angeles", "institution_logo": "https://phagesdb.org/media/institutions/UCLA.jpg", "institution_url": "http://www.ucla.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Turbid, bullseye ~4 mm", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-08-25T22:39:14-04:00", "date_modified": "2022-03-16T11:02:14-04:00" }, { "phage_name": "July", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "People name things after April, May, June, so why not July", "finder_name": "J. Huo, S. McCaughan, C. Molla, A. Scannevin", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.38452 N", "found_GPS_long": "72.529236 W", "found_year": 2024, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "near Hampshire DC, some grass and bark on top. High traffic area", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "small bullseye, up to one millimeter clear plaques,", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-22T10:43:36-04:00", "date_modified": "2025-04-04T11:37:38-04:00" }, { "phage_name": "Jumanji", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Hello class, \r\nMy name is Layla Wade and my name is Mariyah Freeman and today we present to you our phages phodrays and jumanji. Jumanji represents the unexpected results that were identified from our plaque assays and Phodrays reflects the “ph” in phage because our phage deserves a doctorate Nobel prize. We believe that our phage deserves to be sequenced because we’re one of the few who have a temperate phage, our bullseye is a straight kill shot that is rare in the jungle. Our phage has been through a journey of adoption, collecting it from Zion who was an amazing parent in the beginning and now we are raising them to be strong enough to go be sequenced. We believe that we will make Zion very proud, and us as the adopted parents, to ship our phage off to sequencing. We hope you guys vote for ours to be sent off for the future of our phage.", "finder_name": "Mariyah Renee Freeman", "found_city": "Washington", "found_state": "DC", "found_country": "United States", "found_GPS_lat": "38.921333 N", "found_GPS_long": "77.02275 E", "found_year": 2024, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-09-26T07:48:48-04:00", "date_modified": "2025-04-04T11:37:32-04:00" }, { "phage_name": "Jumble", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Madison Glascock", "found_city": "", "found_state": "ID", "found_country": "USA", "found_GPS_lat": "43.653 N", "found_GPS_long": "116.677 W", "found_year": 2018, "p_institution": { "institution_code": "CIDA", "institution_name": "College of Idaho", "institution_logo": "https://phagesdb.org/media/institutions/the-college-of-idaho.gif", "institution_url": "http://www.collegeofidaho.edu/", "institution_city": "Caldwell", "institution_state": "ID", "institution_country": "USA", "institution_latitude": "43.653834", "institution_longitude": "-116.6768" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-30T16:56:18-05:00", "date_modified": "2020-09-17T14:09:50-04:00" }, { "phage_name": "Jumbo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The plaques were very small, so I named my phage Jumbo ironically.", "finder_name": "Amanda Weber", "found_city": "Hudson", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "44.984444 N", "found_GPS_long": "92.754444 W", "found_year": 2015, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "From Compost soil. Air temp was 69*F, sunny, no wind, low humidity, semi-moist soil with small pieces of leaves and other debris, 30mm deep.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "DF", "temperate": false }, "psubcluster": { "subcluster": "DF3" }, "morphotype": "SIPHO", "plaque_notes": "Small, pinprick sized plaques. Clear appearance.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-02-17", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1323, "finishing_reactions": 0, "genome_length": 78302, "gcpercent": "54.5", "end_type": "TREP", "repeat_length": 370, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 102, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Jumbo_CompleteNotes_gKv3aNz.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Jumbo_Minimal_Final.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Jumbo_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Jumbo_CoverSheet.pdf", "submitted_annotation_date": "2016-05-16T16:33:32-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Jumbo_final_flat.txt", "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KX557281", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jumbo_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Jumbo_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Jumbo_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Jumbo.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jumbo_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Jumbo_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Jumbo_gb.dnam5", "date_added": "2015-11-23T14:43:13-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "JumboGumbo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "As lab partners, we decided to use the first initials of our first names, and made a silly name for our phage with a capital \"J\" to indicate me Jesse and \"G \"for Giah.", "finder_name": "Jesse Nguyen", "found_city": "Philadelphia", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.04694 N", "found_GPS_long": "75.2149 E", "found_year": 2024, "p_institution": { "institution_code": "STJO", "institution_name": "Saint Joseph's University", "institution_logo": "https://phagesdb.org/media/institutions/SJU.jpg", "institution_url": "http://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "39.995544", "institution_longitude": "-75.23895" }, "enriched_sample": true, "discovery_notes": "Date: 09/17/24\t\t\t\t\t\t\r\n\r\nTime: 4:30 pm\r\n\r\nTemperature:\t 71 OF\t\t21.67⁰C \r\n\r\nWeather Conditions: Windy and Cloudy ; \r\n\r\nHumidity: 81%\r\n\r\nDepth: 0.79 in\t; 2 cm \r\n\r\nMoisture content : Dry \r\n\r\nOther defining features: Close to Villiger Hall of Saint Joseph's University and on an incline next to the curb", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Average plaque size: 2.5 mm\r\n\r\nAppearance: clear turbid shape\r\n\r\nTakes 48 hours for plaques to emerge", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JumboGumbo_Plaque_I6nKiw1.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/1733883063524-a5c3dbad-532d-4b42-acde-040274ab5fd7_1.jpeg", "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-07T11:56:21-05:00", "date_modified": "2025-04-04T11:37:45-04:00" }, { "phage_name": "Jumboset", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Mikayla Peccerillo and Dominick Marzigliano", "found_city": "newburgh", "found_state": "NY", "found_country": "US", "found_GPS_lat": "40.220309 N", "found_GPS_long": "97.284295 W", "found_year": 2021, "p_institution": { "institution_code": "MSMC", "institution_name": "Mount Saint Mary College", "institution_logo": "https://phagesdb.org/media/institutions/MountSaintMaryCollege.JPG", "institution_url": "http://www.msmc.edu/", "institution_city": "Newburgh", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.512859", "institution_longitude": "-74.01247" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "AK", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2022-01-24", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 363, "finishing_reactions": 0, "genome_length": 43780, "gcpercent": "61.0", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 13, "overhang_sequence": "GGTAACCGTGATA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 62, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Jumboset_Minimal_Final_T8vhX8U.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2022-11-09T15:51:42-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Jumboset.gbf", "qced_genbank_file_date": "2022-11-09T15:51:42-05:00", "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OP820465", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Jumboset.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-20T14:41:55-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Jumie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is a combination of the founders' names. ", "finder_name": "Jaimie Navid and Julia Kim", "found_city": "St. Louis", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "38.644675 N", "found_GPS_long": "90.302144 E", "found_year": 2014, "p_institution": { "institution_code": "WUSL", "institution_name": "Washington University in St. Louis", "institution_logo": "https://phagesdb.org/media/institutions/WashU2_.jpg", "institution_url": "http://www.wustl.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.649087", "institution_longitude": "-90.31083" }, "enriched_sample": false, "discovery_notes": "Found on September 1 at 5:31 pm. It was 86 degrees, an urban area. The soil was moist and the sample was collected 6.5 cm deep. The location was 15 feet from a road, 10 feet from a tree, and 30 feet from cement.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques of (9/23, 10^-5 plate) are approximately 3 mm in diameter. Cloudy, with defined edges.", "lysogeny_notes": "Based on plaque morphology, Jumie is probably a temperate phage.", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "WASHU", "facility_name": "The McDonnell Genome Institute at Washington University", "contact_person": "", "shipping_address": "", "facility_website": "http://genome.wustl.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jumie_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Jumie_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Jumie_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jumie_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Jumie_EMpic_Thumb.jpg", "dnam_file": null, "date_added": "2014-10-02T09:36:05-04:00", "date_modified": "2020-08-03T15:47:48-04:00" }, { "phage_name": "Jumper", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage is named after the trail I found it on.", "finder_name": "Olivia Anderson", "found_city": "Orange City", "found_state": "IA", "found_country": "United States", "found_GPS_lat": "42.0 N", "found_GPS_long": "96.0 W", "found_year": 2023, "p_institution": { "institution_code": "NWRC", "institution_name": "Northwestern College", "institution_logo": "https://phagesdb.org/media/institutions/NorthwesternCollege_WeS7TIe.jpg", "institution_url": "http://www.nwciowa.edu/", "institution_city": "Orange City", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.997964", "institution_longitude": "-96.05829" }, "enriched_sample": true, "discovery_notes": "Found just off the puddle jumper trail in moist soil near a tree.", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "2 mm spherical plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jumper_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-19T11:29:26-04:00", "date_modified": "2024-02-25T15:28:18-05:00" }, { "phage_name": "Jumpman", "old_names": "Jumpmanviro", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I chose the name Jumpman for my phage because it is a Myoviridae so it has a contractile tail. The contractile action reminds me of jumping, and my favorite basketball player is Michael Jordan, who's logo is known as the jumpman.", "finder_name": "Andre Wooley", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2016, "p_institution": { "institution_code": "USPH", "institution_name": "University of the Sciences (now St. Joseph's Univ)", "institution_logo": "https://phagesdb.org/media/institutions/USciences.png", "institution_url": "https://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "39.947118", "institution_longitude": "-75.20724" }, "enriched_sample": true, "discovery_notes": "The sample was collected from a flower box near Clark Park in West Philadelphia, Pennsylvania. The soil was dry and the soil taken was about 10 cm below the surface.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "This phage is highly lytic because the plaques it makes are very clear and small. The lysate generated from the webbed plates it formed was yellow, but not cloudy.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-14T21:47:02-05:00", "date_modified": "2020-09-17T14:07:15-04:00" }, { "phage_name": "Juna", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Sophia Deluca", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States of America", "found_GPS_lat": "40.44628 N", "found_GPS_long": "79.95314 W", "found_year": 2024, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", 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"rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": 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"mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", 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"institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-07-10T11:35:31-04:00", "date_modified": "2017-09-24T10:38:11-04:00" }, { "phage_name": "JuneB", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage is named after my new puppy whose name is June, but I call her June bug.", "finder_name": "Sally Settle", "found_city": "Bowling Green", "found_state": "KY", "found_country": "United States", "found_GPS_lat": "37.425 N", "found_GPS_long": "86.425 W", "found_year": 2024, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "The soil was close to a stream, but fairly dry considering how hot it had been. There was vegetation around the area, but the specific spot I was in was barren.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques of this phage were fairly mixed at first, I would continually have turbid and clear plaques. But after many dilutions, the clear plaques remained. They were all small, the largest ones measured around 4-5 mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JuneB_Plaque.heic", "em_file": "https://phagesdb.org/media/emPics/JuneB_EMPic.tiff", "digest_file": "https://phagesdb.org/media/digestPics/JuneB_Digest.jpeg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-15T09:13:35-05:00", "date_modified": "2024-12-02T08:46:52-05:00" }, { "phage_name": "Junebug", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Junebug is the name of my phage because the virus is the shape of a Junebug and it was the only phage that stood out to me on the plate due to its antenna like pattern attached to the phage as well. ", "finder_name": "Jared Bailey", "found_city": "Atlanta", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "33.0 N", "found_GPS_long": "84.0 W", "found_year": 2017, "p_institution": { "institution_code": "MORE", "institution_name": "Morehouse College", "institution_logo": "https://phagesdb.org/media/institutions/Morehouse_Logo.jpg", "institution_url": "http://www.morehouse.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.746175", "institution_longitude": "-84.41438" }, "enriched_sample": true, "discovery_notes": "I found the sample behind Brazeal Hall at Morehouse College on 8/18/2017. It was near a sewage pipe and near the gate that separates Atlanta Student Movement Blvd. from the back of the dorm. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-10-12T12:36:41-04:00", "date_modified": "2020-09-17T14:08:01-04:00" }, { "phage_name": "JuneC", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Sally Settle", "found_city": "Bowling Green", "found_state": "KY", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2024, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-09-26T08:24:50-04:00", "date_modified": "2024-09-26T08:24:50-04:00" }, { "phage_name": "JuneStar", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after a character in Flannery O'Connor's short story \"A Good Man is Hard to Find\".", "finder_name": "Sarah Rodriguez Brannon", "found_city": "Bismarck", "found_state": "ND", "found_country": "USA", "found_GPS_lat": "45.72573 N", "found_GPS_long": "100.75322 W", "found_year": 2023, "p_institution": { "institution_code": "UMRY", "institution_name": "University of Mary", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfMary.jpg", "institution_url": "http://www.umary.edu/", "institution_city": "Bismarck", "institution_state": "ND", "institution_country": "USA", "institution_latitude": "46.721954", "institution_longitude": "-100.7531" }, "enriched_sample": true, "discovery_notes": "Soil sample found from under a tree at the University of Mary. Soil was fine, dark, and wet.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "AZ", "temperate": true }, "psubcluster": { "subcluster": "AZ1" }, "morphotype": "SIPHO", "plaque_notes": "Large, clear plaque, 6mm in diameter (including 1mm thick halo).", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2023-12-27", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1895, "finishing_reactions": 0, "genome_length": 44517, "gcpercent": "68.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CGAACCGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 68, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JuneStar_CompleteNotes.docx", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JuneStar_Minimal_Final_3JTppq3.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/JuneStar_Authors_8RQuLDi.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/JuneStar_CoverSheet_UgIe4WK.pdf", "submitted_annotation_date": "2024-06-02T21:02:50-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/JuneStar_flat.txt", "qced_genbank_file_date": "2024-06-02T21:02:50-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PP978778", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/JuneStar_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/JuneStar.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-03T15:45:16-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Jung", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Feruz Abdela", "found_city": "Las Vegas", "found_state": "NV", "found_country": "United States", "found_GPS_lat": "36.131377 N", "found_GPS_long": "115.239981 W", "found_year": 2019, "p_institution": { "institution_code": "UNLV", "institution_name": "University of Nevada Las Vegas", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofNevadaLasVegas.jpg", "institution_url": "https://www.unlv.edu/", "institution_city": "Las Vegas", "institution_state": "NV", "institution_country": "USA", "institution_latitude": "36.108190", "institution_longitude": "-115.1431" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 36, "growth_notes": "", "pcluster": { "cluster": "P", "temperate": true }, "psubcluster": { "subcluster": "P1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-01-23", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1084, "finishing_reactions": 0, "genome_length": 46561, "gcpercent": "67.1", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 13, "overhang_sequence": "CCTGCCGCCCGAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 77, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Jung_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2020-05-11T11:20:03-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Jung_flat.txt", "qced_genbank_file_date": "2020-05-11T11:20:03-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MT498061", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Jung.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-13T08:25:31-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Junger", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I could not think of a name, so I just named my phage after myself. ", "finder_name": "Julia Unger", "found_city": "Conway", "found_state": "SC", "found_country": "USA", "found_GPS_lat": "33.783539 N", "found_GPS_long": "79.026462 W", "found_year": 2018, "p_institution": { "institution_code": "COCA", "institution_name": "Coastal Carolina University", "institution_logo": "https://phagesdb.org/media/institutions/CoastalCarolinaUniversity.png", "institution_url": "http://www.coastal.edu/", "institution_city": "Conway", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "33.795617", "institution_longitude": "-79.01207" }, "enriched_sample": true, "discovery_notes": "Sample is muddy and moist. Temperature outside feels like 85, ground most likely is around the same temperature if not hotter. Collected mud in evening, let sit overnight in room temperature. ", "isolation_temperature": 27, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Junger produces two distinguishable types of plaques. Small pinprick plaques that are turbid and larger plaques that are more clear and less numerous. Junger has gone though two rounds of purification and this dual plaque morphology has remained consistent. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Junger_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Junger_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-12-12T14:32:49-05:00", "date_modified": "2020-09-17T14:09:50-04:00" }, { "phage_name": "Jungfraujoch", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named phage after Jungfraujoch after the tallest mountain in the Swiss Alps because I love to hike.", "finder_name": "Sophia E. Kruse", "found_city": "Providence", "found_state": "RI", "found_country": "USA", "found_GPS_lat": "40.741894 N", "found_GPS_long": "73.989308 W", "found_year": 2018, "p_institution": { "institution_code": "PROV", "institution_name": "Providence College", "institution_logo": "https://phagesdb.org/media/institutions/providence-college-1-logo-primary.jpg", "institution_url": "http://www.providence.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.844145", "institution_longitude": "-71.43463" }, "enriched_sample": true, "discovery_notes": "The weather on the day the soil sample was collected was 84 degrees Fahrenheit, sunny and humid (sample was collected on September 5th, 2018). The soil sample was watery/damp and had some mulch mixed in. ", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JUNGFRAUJOCH_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/JUNGFRAUJOCH_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jungfraujoch_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-12-12T14:29:09-05:00", "date_modified": "2020-09-17T14:10:29-04:00" }, { "phage_name": "Jungkook", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The most aesthetic member of the Korean pop group BTS.", "finder_name": "Z. Morales, D. Bandeira, K. Trigo, A. Goon", "found_city": "Amherst", "found_state": "MA", "found_country": "", "found_GPS_lat": "42.378433 N", "found_GPS_long": "72.546795 W", "found_year": 2024, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "In a somewhat grassy area, the soil wasn’t very moist. At the UMass Barn.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Makes plaques of about 1.5 mm in diameter with a bullseye shape, specifically with a 0.5mm diameter clear circle, and a 1mm diameter cloudy ring.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-28T09:42:10-04:00", "date_modified": "2025-04-04T11:37:38-04:00" }, { "phage_name": "JungleBoyz", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Dominick Wright, Justin DelSeni", "found_city": "Newburg", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2019, "p_institution": { "institution_code": "MSMC", "institution_name": "Mount Saint Mary College", "institution_logo": "https://phagesdb.org/media/institutions/MountSaintMaryCollege.JPG", "institution_url": "http://www.msmc.edu/", "institution_city": "Newburgh", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.512859", "institution_longitude": "-74.01247" }, "enriched_sample": true, "discovery_notes": "The soil sample was obtained from a dry source. The grass in the surrounding area could be described as patchy.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JungleBoyz_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/JungleBoyz_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JungleBoyz_Plaque_8jadR3Z.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/JungleBoyz_EMPic.jpg", "dnam_file": null, "date_added": "2019-10-24T11:52:27-04:00", "date_modified": "2020-09-17T14:11:39-04:00" }, { "phage_name": "JungleTruffle", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A combination of my favorite song (Jungle Boogie) and my dorm nickname (Midnight Truffle).", "finder_name": "Nathaniel Jenkins", "found_city": "Williamsburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "37.279167 N", "found_GPS_long": "76.723611 W", "found_year": 2013, "p_institution": { "institution_code": "CWAM", "institution_name": "College of William & Mary", "institution_logo": "https://phagesdb.org/media/institutions/william_and_mary-01.jpg", "institution_url": "http://www.wm.edu/", "institution_city": "Williamsburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.272588", "institution_longitude": "-76.71691" }, "enriched_sample": false, "discovery_notes": "Found on the Campus' Calcareous Ravine on September 24th ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques tended to be fairly small and kept decreasing in size as experimentation went on. In final purification, the plaques did show an increase in size compared to what the average size had been", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JungleTruffle_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/JungleTruffle_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JungleTruffle_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/JungleTruffle_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2013-12-18T11:19:05-05:00", "date_modified": "2020-09-17T14:05:25-04:00" }, { "phage_name": "Jungshook", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is a reference known by the BTS ARMY.", "finder_name": "Gabi Rojo", "found_city": "La Jolla", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "33.27669 N", "found_GPS_long": "117.277463 W", "found_year": 2019, "p_institution": { "institution_code": "UCSD", "institution_name": "University of California, San Diego", "institution_logo": "https://phagesdb.org/media/institutions/UCSD.png", "institution_url": "http://www.ucsd.edu/", "institution_city": "San Diego", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "32.880335", "institution_longitude": "-117.2340" }, "enriched_sample": true, "discovery_notes": "The soil was found near TATA Hall at UCSD.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "platensis", "strain_name": "MJ1A1", "strain_species": { "id": 41, "genus": "Streptomyces", "species_name": "platensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 41, "genus": "Streptomyces", "species_name": "platensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-12-12T08:29:29-05:00", "date_modified": "2019-12-12T08:29:29-05:00" }, { "phage_name": "Juni", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage name Juni was derived from the founder's name, Juanita.", "finder_name": "Juanita Coronel", "found_city": "Lisle", "found_state": "IL", "found_country": "United States", "found_GPS_lat": "41.463 N", "found_GPS_long": "88.551 W", "found_year": 2023, "p_institution": { "institution_code": "BENU", "institution_name": "Benedictine University", "institution_logo": "https://phagesdb.org/media/institutions/PrimaryPNG-red-bl.png", "institution_url": "http://www.ben.edu/", "institution_city": "Lisle", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "After the soil sample went through direct isolation, plaque assay, enriched isolation, amplification and characterization. Phage Juni is a lytic phage with a plaque diameter of .8mm.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Juni_Plaque.png", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Juni_Digest.jpeg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-28T11:54:01-05:00", "date_modified": "2025-07-11T12:34:15-04:00" }, { "phage_name": "JunieBJones", "old_names": "PhiMu", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The B stands for bacteriophage. The sample was found under a bench at the Purdue Phi Mu home.", "finder_name": "Kylie Snyder & Violet Kuchta", "found_city": "West Lafayette", "found_state": "IN", "found_country": "USA", "found_GPS_lat": "40.42646 N", "found_GPS_long": "86.918327 W", "found_year": 2017, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": true, "discovery_notes": "Collected on 8/28/17. It was drizzling out, so the soil was moist. The sample was taken from underneath a bench on top of a small slope - indicating foot traffic. The soil was underneath mulch at a depth of 3 cm. Some soil was visible in the sample, because of a nearby sand volleyball court.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The average diameter of plaque is 0.3 cm. The morphology lytic, with clear plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JunieBJones_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/JunieBJones_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JunieBJones_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/JunieBJones_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-11-28T20:40:22-05:00", "date_modified": "2020-09-17T14:08:46-04:00" }, { "phage_name": "JunieLou", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Lauren Fisk", "found_city": "Orange City", "found_state": "IA", "found_country": "United States", "found_GPS_lat": "42.998597 N", "found_GPS_long": "96.05821 E", "found_year": 2024, "p_institution": { "institution_code": "NWRC", "institution_name": "Northwestern College", "institution_logo": "https://phagesdb.org/media/institutions/NorthwesternCollege_WeS7TIe.jpg", "institution_url": "http://www.nwciowa.edu/", "institution_city": "Orange City", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.997964", "institution_longitude": "-96.05829" }, "enriched_sample": false, "discovery_notes": "Picked from underneath a Ginko tree in a garden.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-29T14:55:09-04:00", "date_modified": "2024-11-11T09:08:34-05:00" }, { "phage_name": "Junimo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The reason for naming my phage Junimo is because I wanted to name it after something that I love. One of my favorite video games is Stardew Valley, and Junimos in Stardew are little mythical creatures that help the player complete quests and tend to their farm. So I thought it would be appropriate to name my phage after them. Also, another thing that contributed to the name is that Junimo's have little atenas that remind of capsids on bacterial phages.", "finder_name": "Niara Hughes", "found_city": "Bethlehem", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.58929 N", "found_GPS_long": "75.35836 W", "found_year": 2025, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": true, "discovery_notes": "The place in which the original soil sample was taken was chosen for two reasons. The first is that area was an old corn field, so there was a lot of dead plant matter that I hypothesized would have no problem developing phages. The second reason is that during the football tailgate people dispose of all kinds of waste in that area, enriching it with multiple types of bacteria, which would give the way to multiple different strands of bacterialphages.", "isolation_temperature": -9, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques come in a variety of different sizes between 3 and 5 mm. Plaques are generally clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Junimo_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Junimo_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Junimo_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Biology_Lab_User_202..._imresizer.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/5_imresizer.jpg", "dnam_file": null, "date_added": "2025-02-25T11:11:54-05:00", "date_modified": "2025-05-01T16:06:22-04:00" }, { "phage_name": "Junior", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for my phage is representative of it's small diameter. ", "finder_name": "Cassandra Yerger", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.442778 N", "found_GPS_long": "79.955816 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "The phage was collected from outside of Brackenridge Hall at the University of Pittsburgh. The temperature was 22 degrees Fahrenheit, and the soil was frozen. Snow was also present on the ground in small amounts.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "This phage develops plaques with a very small diameter that tend to be fairly clustered. The turbidity is clear, but with a very slight overcast. The plaques tend to be very circular. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Junior_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Junior_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Junior_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Junior_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-02-06T17:17:06-05:00", "date_modified": "2020-09-17T14:08:31-04:00" }, { "phage_name": "Junior17", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage is named after my childhood dog Junior.", "finder_name": "Olivia Sciandra", "found_city": "Land O Lakes", "found_state": "FL", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "USFL", "institution_name": "University of South Florida", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofSouthFlorida.jpg", "institution_url": "http://www.usf.edu/", "institution_city": "Tampa", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "28.058438", "institution_longitude": "-82.41395" }, "enriched_sample": false, "discovery_notes": "It was taken from a house front lawn on a sunny day with dry soil conditions.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are clear indicating a lytic cycle phage. Plaques range from very small, about the diameter of a needle head to about twice that diameter. Plaques form after 48 hours.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Junior17_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-10-30T22:40:13-04:00", "date_modified": "2020-09-17T14:08:06-04:00" }, { "phage_name": "Juniormint", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Christopher Orear, Ellie Goldman", "found_city": "Boulder", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "40.007188 N", "found_GPS_long": "105.264205 W", "found_year": 2022, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "Found outside of the University of Colorado - Boulder Engineering Center.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "P", "temperate": true }, "psubcluster": { "subcluster": "P1" }, "morphotype": "SIPHO", "plaque_notes": "Small, pinprick, clear plaques.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2022-12-13", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1591, "finishing_reactions": 0, "genome_length": 45575, "gcpercent": "67.1", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 12, "overhang_sequence": "CCCGCCCCCCGA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 74, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Juniormint_CompleteNotes.xlsx", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Juniormint_Minimal_Final_i7urmvN.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Juniormint_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Juniormint_CoverSheet.docx", "submitted_annotation_date": "2023-08-20T18:11:00-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Juniormint_Flat.txt", "qced_genbank_file_date": "2023-08-20T18:11:00-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OR521066", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Juniormint_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Juniormint_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Juniormint_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Juniormint.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-29T15:12:28-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "JuniorMP", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Emma Sarro", "found_city": "New City", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "41.1333 N", "found_GPS_long": "74.0024 W", "found_year": 2020, "p_institution": { "institution_code": "DCBL", "institution_name": "Dominican University New York", "institution_logo": "https://phagesdb.org/media/institutions/CV_DU_stacked_2022.png", "institution_url": "https://www.duny.edu/", "institution_city": "Orangeburg", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.039643", "institution_longitude": "-73.94976" }, "enriched_sample": false, "discovery_notes": "Tomato Garden in semi-moist soil, outside temperature was 65 degrees F.", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "lytic and medium sized", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/JuniorMP_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-11-11T21:25:57-05:00", "date_modified": "2021-11-28T19:25:02-05:00" }, { "phage_name": "JuniorVarsity", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Parker Bixby, Luke Brenchley", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.665956 N", "found_GPS_long": "117.403863 W", "found_year": 2023, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JuniorVarsity_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/JuniorVarsity_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-07T13:43:27-05:00", "date_modified": "2024-10-08T10:20:07-04:00" }, { "phage_name": "Juniper", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The soil sample was taken from underneath a juniper bush. ", "finder_name": "Katie Aiello and Charlie Toombs", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.729167 N", "found_GPS_long": "117.166389 W", "found_year": 2018, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "This phage was found in a soil sample taken outside of the College of Education on the Washington State University campus in Pullman, WA. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "There was some variation in plaque size however most were medium-large. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Juniper_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Juniper_Plaque_Thumb.jpeg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-04-25T13:15:22-04:00", "date_modified": "2020-09-17T14:09:44-04:00" }, { "phage_name": "Juniper1", "old_names": "Berklium", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A series of names were shuffles through when finally, my cat's name Juniper with the number 1 applied to end was processed by the database.", "finder_name": "Berkley Walton", "found_city": "Bowling Green", "found_state": "KY", "found_country": "United States", "found_GPS_lat": "36.978766 N", "found_GPS_long": "86.466343 W", "found_year": 2022, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "Soil sample was collected from a compost pot. Phage contents were abundant producing completely clear plates. Approximately five serial dilutions were performed, not because of a failed 10-fold dilution or contamination, but because of having such high concentration. A ten-fold dilution was accomplished each round and each weeks results were consistent with proper techniques.", "isolation_temperature": 24, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "Phage contents were abundant throughout multiple serial dilutions producing completely clear plates. After four serial dilutions, individual plaques began to form instead of plaque clusters. Plaques sizes averaged approximately 0.3cm.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2023-04-11", "seq_facility": { "short_name": "NCSTATE", "facility_name": "NC State Genomic Sciences Laboratory", "contact_person": "Jenn Schaff", "shipping_address": "", "facility_website": "http://research.ncsu.edu/gsl/" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3786, "finishing_reactions": 0, "genome_length": 57275, "gcpercent": "61.2", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGAAGGCGC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 99, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Juniper1_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2024-08-15T13:28:00-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Juniper1_flat.txt", "qced_genbank_file_date": "2024-08-15T13:28:00-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PQ201084", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Juniper1_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Juniper1.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-22T14:05:11-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Junipero", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My favorite planet is Jupiter and my plaques has spots in the middle which looks like the spot in the planet, this led to originated the name Junipero.", "finder_name": "Sabi Shrestha", "found_city": "Denton", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.209955 N", "found_GPS_long": "97.149354 W", "found_year": 2018, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "Obtained the soil on 9-12-18, 9:27 am with 72C in Denton Texas. Wind of ESE at 5 mph to 10 mph with cloudy and stray rain shower. The soil was wet and dark brown.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are circular with a diameter of 0.2 mm. The plaques are cloudy.", "lysogeny_notes": "Individual plaques appeared in the higher dilution spot. Isolated a lysogenic strain of the Streptomyces Sanglieri with this phage.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "sanglieri", "strain_name": "UNT16F27A", "strain_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Junipero_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Junipero_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Junipero_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Junipero_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Junipero_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-10-15T14:20:17-04:00", "date_modified": "2020-09-17T14:09:39-04:00" }, { "phage_name": "Junk", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Michael Buckholt", "found_city": "Worcester", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2020, "p_institution": { "institution_code": "WOPI", "institution_name": "Worcester Polytechnic Institute", "institution_logo": "https://phagesdb.org/media/institutions/WPI.png", "institution_url": "http://www.wpi.edu/", "institution_city": "Worcester", "institution_state": "MA", "institution_country": "United States", "institution_latitude": "42.274947", "institution_longitude": "-71.80640" }, "enriched_sample": null, "discovery_notes": "Joann's Flower Bed", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Medium size, uniform shape", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-08T13:51:03-04:00", "date_modified": "2021-10-08T13:51:03-04:00" }, { "phage_name": "Junkang", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I decided to name my phage after some of my very close friends.", "finder_name": "Aria Wei", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.33 N", "found_GPS_long": "76.62 E", "found_year": 2018, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": null, "discovery_notes": "We collected our phages from soil near our local cafeteria, and the soil was moist, muddy, and dark brown.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Perfectly circular plaques, cloudy margins, relatively medium sized, head size is 70-75nm, tail size is 150-170nm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Junkang_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-05-18T09:53:22-04:00", "date_modified": "2020-09-17T14:10:19-04:00" }, { "phage_name": "Juno", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Alexander J. Jaramillo Cañas", "found_city": "", "found_state": "PR", "found_country": "", "found_GPS_lat": "19.4625 N", "found_GPS_long": "66.0175 W", "found_year": 2014, "p_institution": { "institution_code": "UPRC", "institution_name": "University of Puerto Rico at Cayey", "institution_logo": "https://phagesdb.org/media/institutions/PuertoRicoCayey.gif", "institution_url": "http://www.cayey.upr.edu/", "institution_city": "Cayey", "institution_state": "PR", "institution_country": "USA", "institution_latitude": "18.117905", "institution_longitude": "-66.16160" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-06-08T16:04:00-04:00", "date_modified": "2020-09-17T14:06:01-04:00" }, { "phage_name": "Juno112", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We decided to name our plaque something that was similar to what we were naming a new pet.", "finder_name": "Shelby Carter and Jasmine Amaya", "found_city": "Ownings Mills", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "39.42651 N", "found_GPS_long": "76.77644 W", "found_year": 2023, "p_institution": { "institution_code": "STEV", "institution_name": "Stevenson University", "institution_logo": "https://phagesdb.org/media/institutions/Stevenson_University_logo.png", "institution_url": "https://www.stevenson.edu/", "institution_city": "Owings Mills", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "This sample was found at Stevenson University's South campus. At the basketball courts next to Ratcliffe on the Owning Mills campus.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "AS", "temperate": true }, "psubcluster": { "subcluster": "AS3" }, "morphotype": "", "plaque_notes": "The chosen plaque is in proximity to other plaques, small, and turgid.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-01-20", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1394, "finishing_reactions": 0, "genome_length": 38469, "gcpercent": "66.0", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 12, "overhang_sequence": "GAGTTGCCGGCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 69, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Juno112_CompleteNotes.csv", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Juno112_Minimal_Final_GbJFIr0.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Juno112_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Juno112_CoverSheet.docx", "submitted_annotation_date": "2024-08-29T12:47:32-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Juno112_flat.txt", "qced_genbank_file_date": "2024-08-29T12:47:32-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PQ362678", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Juno112_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Juno112.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-09T11:24:52-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Junopia", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name \"Junopia\" came from a combination of what I would like to name my first child, \"Juno\", and \"-pia\" is Latin for \"pious\" or \"reverent.\"", "finder_name": "Kai-Lin K. Liang", "found_city": "Brooklyn", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "4.053083 N", "found_GPS_long": "7.0925 E", "found_year": 2022, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": true, "discovery_notes": "The sample was collected from a layer below the top surface of a square plot outside my home in Brooklyn, NY. Before collecting my soil, the snow had just melted 24 hours since it had stopped snowing and the ground underneath the sample was frozen. The soil sample collected was frozen and collected through large clumps in an ambient temperature of 1ºC; the soil softened and was moist at room temperature of approximately 22ºC after 4 hours being placed in my home.", "isolation_temperature": 1, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Possibly two to three different types of plagues were sighted throughout the various plaque assays with sizes of 1.0mm or 0.50mm, but I focused on the 1.0mm plaque throughout the discovery process of Junopia. All of the plaques were circular and clear; no changes in shape or characteristics were sighted throughout the process. Junopia is a siphoviridae with the phage head being an icosahedra and its tail being thin, long, and flexible.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Junopia_Plaque_9jsPSLC.jpg", "em_file": "https://phagesdb.org/media/emPics/Junopia_EMPic_UFC6dyJ.tif", "digest_file": "https://phagesdb.org/media/digestPics/Junopia_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Junopia_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2022-04-06T23:39:22-04:00", "date_modified": "2025-09-02T16:26:12-04:00" }, { "phage_name": "Junos", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name Junos was chosen after the Roman goddess, Juno.", "finder_name": "Pavi P., Jalene G., Himani P., Hannah G.", "found_city": "Amherst", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.389361 N", "found_GPS_long": "72.523278 W", "found_year": 2023, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "This is an adopted phage. The soil sample was collected on the Umass Amherst campus on the Franklin Permaculture garden. It is a mulchy area with densely packed soil. It may also be a little damp due to the weather.", "isolation_temperature": 33, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque is 3mm in size and circular in shape. The color is a little foggy, and the edges are not presented as clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/junos_plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/junos_empic_thumb.png", "dnam_file": null, "date_added": "2023-03-24T08:34:12-04:00", "date_modified": "2024-02-25T15:28:27-05:00" }, { "phage_name": "Junu", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Eden Yared, Meghan Thomas", "found_city": "Silver Spring", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "38.9896 N", "found_GPS_long": "77.029 W", "found_year": 2024, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Rough edges, turbid/cloudy appearance", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "mirabilis", "strain_name": "NRRL B-2400", "strain_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Junu_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Junu_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Junu_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Junu-plaque.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Junu.png", "dnam_file": null, "date_added": "2024-10-02T10:01:38-04:00", "date_modified": "2025-04-04T11:37:44-04:00" }, { "phage_name": "Jupiter", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Uyen Nguyen", "found_city": "Dallas", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "32.915908 N", "found_GPS_long": "96.735235 W", "found_year": 2013, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "Soil was dry. Discovered during the 2013 UNT-HHMI Summer Transitions Workshop.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "venezuelae", "strain_name": "ATCC 10712", "strain_species": { "id": 5, "genus": "Streptomyces", "species_name": "venezuelae", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10712", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 5, "genus": "Streptomyces", "species_name": "venezuelae", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jupiter_Plaque.tif", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jupiter_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2013-10-05T11:55:12-04:00", "date_modified": "2021-01-28T11:04:29-05:00" }, { "phage_name": "Jupiter2017", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I decided to name my phage Jupiter2017 because ever since I was little, I have told my parents that I want to name my future daughter Jupiter. Therefore, now that I actually have the chance to name something that is my own, I thought that this would be the perfect name for my phage. In addition, I found my phage in the year 2017 which is why the name of my phage is Jupiter2017. ", "finder_name": "Megha Sangam ", "found_city": "Philadelphia ", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.954167 N", "found_GPS_long": "75.188889 W", "found_year": 2017, "p_institution": { "institution_code": "DRXL", "institution_name": "Drexel University", "institution_logo": "https://phagesdb.org/media/institutions/logo-drexel.jpg", "institution_url": "http://drexel.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Date of sample collection: October 4, 2017 \r\n\r\nTime sample collected at: 11:29 AM \r\n\r\nDepth of Soil dug: about 2.5 inches\r\n \r\nApproximate Temperature: 70 degrees Fahrenheit \r\n\r\nGeneral Location: 33rd and Chestnut \r\n\r\nSample Site Description: The soil collected for this experiment was found outside a Saxby's around one of the trees that were planted by Drexel University.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The morphology of my plaque is small and a \"bulls-eye\" meaning that it is clear in the center with some clouding around the edges of the plaque. This indicates there are phages going through the lysogenic cycle as well as the lytic cycle in my plaque. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Jupiter2017_Digest.JPG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-12-04T19:26:04-05:00", "date_modified": "2020-09-17T14:08:48-04:00" }, { "phage_name": "JupiterBlue", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My favorite planet and favorite color.", "finder_name": "Sophie Post and Conner Dunathan", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.01 N", "found_GPS_long": "105.27 W", "found_year": 2021, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 26, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are cloudy temperate plaques with ~3cm clear centers, with a whole plaque of ~5cm. Capsids are about 60nm on average in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JupiterBlue_Plaque_sbZZbcs.jpg", "em_file": "https://phagesdb.org/media/emPics/JupiterBlue_EMPic_fkICT0y.TIF", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JupiterBlue_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/JupiterBlue_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2021-10-20T15:07:02-04:00", "date_modified": "2022-03-16T11:02:21-04:00" }, { "phage_name": "JupiterFL", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after an old town I lived in.", "finder_name": "Bjian Vijeh, Elle Froggatt", "found_city": "Boulder", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "40.0 N", "found_GPS_long": "105.0 W", "found_year": 2023, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "JupiterFL phage is temperate. The suspected cluster is A based on restriction digest results. Siphoviridae structure suspected.", "isolation_temperature": 1, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Temperate, cloudy plaques. Range in size approximately 2-4mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JupiterFL_Plaque.png", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/JupiterFL_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-04-26T09:45:13-04:00", "date_modified": "2024-02-25T15:28:25-05:00" }, { "phage_name": "JupitersClaim", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Zoe Broker", "found_city": "North Barrington", "found_state": "IL", "found_country": "United States", "found_GPS_lat": "42.196236 N", "found_GPS_long": "88.141987 E", "found_year": 2023, "p_institution": { "institution_code": "LEHI", "institution_name": "Lehigh University", "institution_logo": "https://phagesdb.org/media/institutions/LeHigh.jpg", "institution_url": "http://www.lehigh.edu/", "institution_city": "Bethlehem", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.607157", "institution_longitude": "-75.37829" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JupitersClaim_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/JupitersClaim_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/JupitersClaim_Digest_Ffiv9Jv.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JupitersClaim_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/JupitersClaim_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2023-04-27T09:51:49-04:00", "date_modified": "2025-09-02T16:24:22-04:00" }, { "phage_name": "JuSaB", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the students who found the phage's initials and the section of general biology.", "finder_name": "Justin Debhi and Sarah Garcia-Osorio", "found_city": "North Andover", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.666402 N", "found_GPS_long": "71.122101 W", "found_year": 2022, "p_institution": { "institution_code": "MERI", "institution_name": "Merrimack College", "institution_logo": "https://phagesdb.org/media/institutions/14169_mc_centered_rgb.png", "institution_url": "http://www.merrimack.edu/", "institution_city": "North Andover", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.667953", "institution_longitude": "-71.12257" }, "enriched_sample": true, "discovery_notes": "Sample was collected on September 26th, 2022 at approximately 1:30 PM, and it was \r\napproximately 65°F and partly cloudy. The \r\nsample was collected outside the back entrance of Ash Centre at Merrimack College.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are pretty cloudy and vary in size quite a bit. There are a few that are 0.5 cm in diameter and then smaller ones around 0.2 cm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JuSaB_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-17T13:31:58-05:00", "date_modified": "2024-02-25T15:27:51-05:00" }, { "phage_name": "JustAGirl", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage was named JustAGirl because we are all girls and because we discovered this phage during Women's History Month.", "finder_name": "Alana V, Kaelyn M, Pranavi T, Elizabeth T", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.397514 N", "found_GPS_long": "72.523074 W", "found_year": 2024, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "This plaque was found in a grassy, wooded area of a college campus. This area tends to be grassy or have soil with a lot of organic matter.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/justagirl_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/justagirl_empic_thumb.jpg", "dnam_file": null, "date_added": "2024-03-28T12:09:18-04:00", "date_modified": "2025-04-04T11:37:38-04:00" }, { "phage_name": "JustASigh", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "This phage is named for David A. Asai.\r\n\"A kiss is just a kiss\r\nA sigh is just a sigh\r\nThe fundamental things apply\r\nAs time goes by\"\r\nLyrics of the song \"As time goes by\" by Dooley Wilson.", "finder_name": "Deborah Jacobs-Sera", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.59485 N", "found_GPS_long": "79.982255 W", "found_year": 2023, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Phage was isolated from 50x concentrated wastewater collected from MTSA-Pine-Creek-STP on 10/5/23. Samples were concentrated on 10/13/23 after filtering (.22um) using 30kDa Centricon® Plus-70 Filter Units by Jakobi D, and tested for phage activity by Nate W. & Sergei E.-D.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "AH", "temperate": null }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are tiny pinpoints.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-01-03", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 811, "finishing_reactions": 0, "genome_length": 55871, "gcpercent": "67.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 13, "overhang_sequence": "TGCCGGCGCGGTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 98, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JustASigh_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2024-04-24T22:58:20-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/JustASigh.gbf", "qced_genbank_file_date": "2024-04-24T22:58:20-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PP750961", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JustASigh_Plaque_Rw1fyCi.png", "em_file": "https://phagesdb.org/media/emPics/JustASigh_EMjpg.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/JustASigh.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JustASigh_Plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/JustASigh_EM_Thumb.png", "dnam_file": null, "date_added": "2024-01-03T15:00:22-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "JustBeachy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Phage JustBeachy was named as such due to its isolation from a sample of wet beach shore soil/sand, as well as a play on the phrase “just peachy.” This was to serve as a reminder that if setbacks were faced at any point during experimentation, everything was “just peachy” and progress forward should be made.", "finder_name": "Kristen Llaguri & Andrea Sequeira", "found_city": "Long Beach", "found_state": "MD", "found_country": "United States", "found_GPS_lat": "38.449925 N", "found_GPS_long": "76.454283 W", "found_year": 2022, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "Collected on 9/3/2022 near the shore where dry forest soil met wet sand. The sample itself was a mix of soil and sand.", "isolation_temperature": 35, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "After incubation for 24 hours at 30°C on S. mirabilis, plates showed cloudy, circular plaques with turbid gradient edges. The average diameter of plaques was 0.67mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "mirabilis", "strain_name": "NRRL B-2400", "strain_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JustBeachy_Plaque_Thumb_3WI5pKT.jpeg", "em_file": "https://phagesdb.org/media/emPics/S7_G7_04.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JustBeachy_Plaque_Thumb_hyP09EI.jpeg", "em_thumb_file": "https://phagesdb.org/media/emPics/S7_G7_JustBeachy_Thumb.png", "dnam_file": null, "date_added": "2022-10-05T08:42:24-04:00", "date_modified": "2024-02-25T15:27:52-05:00" }, { "phage_name": "JustBecause", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named our phage JustBecause just because", "finder_name": "Saransh Gothi and John H. Alarcon", "found_city": "St. Louis", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "38.645708 N", "found_GPS_long": "90.311579 W", "found_year": 2016, "p_institution": { "institution_code": "WUSL", "institution_name": "Washington University in St. Louis", "institution_logo": "https://phagesdb.org/media/institutions/WashU2_.jpg", "institution_url": "http://www.wustl.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.649087", "institution_longitude": "-90.31083" }, "enriched_sample": true, "discovery_notes": "The soil sample from which the phage was isolated was collected at the Burning Kumquat Garden on the South 40 of Washington University in St. Louis. The soil was loamy, moderately moist, and rich in organic matter (compost had been mixed into the soil recently). Soil was collected at a depth of 8 cm.", "isolation_temperature": 27, "growth_notes": "", "pcluster": { "cluster": "BM", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "Small plaques formed by phage had a clear centre surrounded by turbidity and further surrounded by a ring of clearing. Plaques were 1-2 mm in diameter.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-08-25", "seq_facility": { "short_name": "WASHU", "facility_name": "The McDonnell Genome Institute at Washington University", "contact_person": "", "shipping_address": "", "facility_website": "http://genome.wustl.edu/" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 129, "finishing_reactions": 0, "genome_length": 184281, "gcpercent": "66.6", "end_type": "TREP", "repeat_length": 1043, "end_notes": "The right end of this genome was clearly defined by a read start buildup on one edge of a double-coverage region. The left end was more gradual, and so an approximate left end was chosen near the other edge of the read buildup.", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 325, "num_tRNAs": 14, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JustBecause_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-07-06T17:52:13-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/JustBecause_flat.txt", "qced_genbank_file_date": "2018-07-06T17:52:13-04:00", "isolation_host": { "genus": "Streptomyces", "species": "lividans", "strain_name": "JI 1326", "strain_species": { "id": 3, "genus": "Streptomyces", "species_name": "lividans", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 3, "genus": "Streptomyces", "species_name": "lividans", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": { "title": "Complete Genome Sequences of Streptomyces lividans Bacteriophages Satis and JustBecause", "abstract": "We present here the complete genomes of two Streptomyces bacteriophages, Satis and JustBecause. Both phages were isolated directly from soil samples collected in St. Louis, MO, and present with an unusual prolate head morphology and large genome lengths of over 180 kb.", "full_author_list": "Kelly Hartigan, John Hudson Alarcon, Andrew Cao, Yongzhen Chen, Nicole Curnutt, Brooke Felsheim, Saransh Gothi, Lucia Grandison, Matthew McDermut, Kaeli-Skye Spight, Xuejing Xu, Kathleen Weston-Hafer, Christopher Shaffer", "short_author_list": "Shaffer et al", "article_url": "", "journal": "Microbiology Resource Announcements", "journal_volume": "", "journal_issue": "", "journal_pages": "", "pub_year": "2019", "pubmed_id": "31395631" }, "in_genbank": true, "genbank_accession": "MH744418", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JustBecause_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/JustBecause_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/JustBecause_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/JustBecause.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/JustBecause_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/JustBecause_EM.jpg", "dnam_file": null, "date_added": "2016-10-13T15:07:31-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "JustBucky", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Krunal Rana", "found_city": "Montclair", "found_state": "NJ", "found_country": "United States", "found_GPS_lat": "40.8259 N", "found_GPS_long": "74.209 W", "found_year": 2019, "p_institution": { "institution_code": "MCSU", "institution_name": "Montclair State University", "institution_logo": "https://phagesdb.org/media/institutions/msu_.jpg", "institution_url": "http://www.montclair.edu/", "institution_city": "Montclair", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "40.861767", "institution_longitude": "-74.19856" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 28, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "68b", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-14T15:38:42-05:00", "date_modified": "2021-01-28T11:04:40-05:00" }, { "phage_name": "JustDirt", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Dustin Bonnette and Ericka Hufford", "found_city": "Monroe", "found_state": "LA", "found_country": "USA", "found_GPS_lat": "32.434317 N", "found_GPS_long": "92.235633 W", "found_year": 2008, "p_institution": { "institution_code": "ULOM", "institution_name": "University of Louisiana at Monroe", "institution_logo": "https://phagesdb.org/media/institutions/ULM_logo.jpg", "institution_url": "http://www.ulm.edu/", "institution_city": "Monroe", "institution_state": "LA", "institution_country": "USA", "institution_latitude": "32.528941", "institution_longitude": "-92.07241" }, "enriched_sample": true, "discovery_notes": "From soil of depth <1 inch under a pecan tree with rotting pecans, temp approx 80 deg F", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Clear, large, lytic plaque", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Justdirt_plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Justdirt_EM.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Justdirt_digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Justdirt_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Justdirt_EM_thumb.jpg", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "JustFrank", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the phage's origin, the Frank Gardens at UMASS Amherst.", "finder_name": "Sophia, Sophia, Autumn, Deekshita", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.38921 N", "found_GPS_long": "72.5231 W", "found_year": 2023, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "JustFrank was found near Franklin Dining Hall in the permaculture garden, within an empty bed. It was taken from cold and dark soil, with few things like rocks or sticks in the sample.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are about 1-2 mm in size, mostly clear, regular edges, no halo or bullseye.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/justfrank_plaque_thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2023-03-30T07:33:06-04:00", "date_modified": "2024-02-25T15:28:27-05:00" }, { "phage_name": "JustHall", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Adaora Ekwunife", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.55 N", "found_GPS_long": "77.1 W", "found_year": 2017, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "Found in front of just hall aprox. 50n ft in front of the door", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "C", "temperate": false }, "psubcluster": { "subcluster": "C1" }, "morphotype": "MYO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-12-21", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 817, "finishing_reactions": 0, "genome_length": 154933, "gcpercent": "64.7", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 227, "num_tRNAs": 32, "num_tmRNAs": 1, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/JustHall_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-12-29T02:28:39-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/JustHall.gbf", "qced_genbank_file_date": "2018-12-29T02:28:39-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK359333", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/JustHall.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/JustHall.dnam5", "date_added": "2017-09-28T12:35:08-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Justin1", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Comes from sample KA2 plaque EA1- The name comes from a dear friend of mine who I met during the DNA purification phase. ", "finder_name": "Kristia Abernathy", "found_city": "New Orleans", "found_state": "LA", "found_country": "USA", "found_GPS_lat": "29.9623 N", "found_GPS_long": "90.102438 W", "found_year": 2012, "p_institution": { "institution_code": "XAVU", "institution_name": "Xavier University of Louisiana", "institution_logo": "https://phagesdb.org/media/institutions/Xavier-University-of-Louisiana.jpg", "institution_url": "http://www.xula.edu/", "institution_city": "New Orleans", "institution_state": "LA", "institution_country": "USA", "institution_latitude": "29.964843", "institution_longitude": "-90.10674" }, "enriched_sample": null, "discovery_notes": "By sidewalk near 801 S. Jefferson Davis Pkwy; feels slightly moist and sandy; 1 1/2 inches deep; 88 degrees Fahrenheit, Cloudy, Humidity 68%; NNW winds 6 mph ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2012-11-06T08:39:47-05:00", "date_modified": "2017-09-12T10:27:30-04:00" }, { "phage_name": "Justindaniel", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I decided to use my first and middle name with the inclusion of my birth month because I want the phage named after me.", "finder_name": "Justin Daniel Segura", "found_city": "Corpus Christi", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "27.7 N", "found_GPS_long": "97.3 W", "found_year": 2021, "p_institution": { "institution_code": "DLMR", "institution_name": "Del Mar College", "institution_logo": "https://phagesdb.org/media/institutions/DelMarLogo_.jpg", "institution_url": "http://www.delmar.edu/", "institution_city": "Corpus Christi", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "27.764369", "institution_longitude": "-97.40711" }, "enriched_sample": true, "discovery_notes": "The soil on the 6th of June in Cole park was damp with a view of the ocean. The environment surrounding the mesquite tree where I extracted the sample was calm with a clean landscape.", "isolation_temperature": 29, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "The phage has a Lytic appearance with clear spots throughout the web plate.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Justindaniel_Plaque.docx", "em_file": "https://phagesdb.org/media/emPics/Justindaniel_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Justindaniel_Digest.docx", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-08-06T12:40:23-04:00", "date_modified": "2021-08-18T14:23:16-04:00" }, { "phage_name": "JustinTime", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Discoverers names are Janelle and Taylor, so for the scientific process, they labeled materials JT. JT, in their minds, stood for just in time. If you put those words together, it makes the name Justin Time.", "finder_name": "Janelle Sosa & Taylor Clem", "found_city": "Corpus Christi", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "27.763056 N", "found_GPS_long": "97.407222 W", "found_year": 2014, "p_institution": { "institution_code": "DLMR", "institution_name": "Del Mar College", "institution_logo": "https://phagesdb.org/media/institutions/DelMarLogo_.jpg", "institution_url": "http://www.delmar.edu/", "institution_city": "Corpus Christi", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "27.764369", "institution_longitude": "-97.40711" }, "enriched_sample": false, "discovery_notes": "Date Found: 8/25/14\r\nTime: 11:51\r\nWeather: 90 Degrees Fahrenheit, bright, hot, 59% humidity\r\nSoil: Moist patch of soil within an area of dry soil", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Our phage was lytic. The plaques were average sized and spaced out from each other. The average diameter of each plaque was 5mm. The average area of each plaque was 6.25π mm^2. We were often faced with very temperate results.", "lysogeny_notes": "JustinTime is a lytic phage.", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/JustinTime_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/JustinTime_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/JustinTime_Digest.JPG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/JustinTime_Plaque_Thumb.jpg", "dnam_file": null, "date_added": "2014-11-07T12:34:54-05:00", "date_modified": "2020-09-17T14:05:37-04:00" }, { "phage_name": "Justken", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Over the course of the semester, my phage and I have gotten a lot of time to get to know each other. There were many times that I was very frustrated with my phage. We have a rather one-sided relationship, my phage just gets to eat bacteria and form plaques, while I have to do and be everything else.\r\n\r\nIt can be rather frustrating being in such a parasocial relationship with my phage, but then one night, while working on my lab notebook, I watched a movie. That might have been, again frustrated, as my phage was just sitting in the incubator, doing the bare minimum, but when I found this movie, it finally made it all click for me and gave me a new perspective on my phage.\r\n\r\nAfter I watched the Barbie movie, the name for my phage finally came to me. Justken. A name that encapsulates the relationship that we had formed over the past few months.\r\n\r\nShe was everything, he was Justken. Barbie has a great day every day, Ken just has a good day when Barbie looks at him. I am Justken’s long-term long-distance low-commitment casual girlfriend.", "finder_name": "Annalisa Cruz", "found_city": "Gainesville", "found_state": "FL", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2023, "p_institution": { "institution_code": "SFEC", "institution_name": "Santa Fe College", "institution_logo": "https://phagesdb.org/media/institutions/santafecollege.png", "institution_url": "https://www.sfcollege.edu/", "institution_city": "Gainesville", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "The samples were collected from the edge of a man-made pond that is a combination of run-off rainwater and pipe-born water. \r\n\r\nThe samples were pulled directly from the cluster of Creeping Mint around the body of water. The soil quality was very wet, dark, and mud-like. The Creeping Mint itself was not wet as it had not rained that day, but they were very green and springy like they had been absorbing plenty of water. The area receives constant sunlight as nothing is blocking the light. Grass and other wetlands plants share the area, but the samples were collected from the middle of the field of Creeping Mint. I collected in each tube 2-5 strands of varying length and some soil was included in the samples.", "isolation_temperature": 32, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-01T10:41:43-05:00", "date_modified": "2024-02-25T15:28:24-05:00" }, { "phage_name": "JustKidding", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kathleen Cornely", "found_city": "Ashburn", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "39.072092 N", "found_GPS_long": "77.466731 W", "found_year": 2011, "p_institution": { "institution_code": "PROV", "institution_name": "Providence College", "institution_logo": "https://phagesdb.org/media/institutions/providence-college-1-logo-primary.jpg", "institution_url": "http://www.providence.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.844145", "institution_longitude": "-71.43463" }, "enriched_sample": true, "discovery_notes": "The soil sample was collected 17 June 2011, 9 am, 75°F, grassy area, full sun, outside Kevin Bradley’s office door at Janelia Farm Research Center. Dry sample taken from surface, close proximity to building, rural setting, NE facing\nThe phage was purified by Jordan Rego and Keara Jones at Providence College.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2011-12-07T10:28:50-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Justrace16", "old_names": "NotaphaageJK", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Justin McGee & Race Karlin", "found_city": "Arkadelphia", "found_state": "AR", "found_country": "USA", "found_GPS_lat": "34.17444 N", "found_GPS_long": "92.09694 W", "found_year": 2016, "p_institution": { "institution_code": "OUBU", "institution_name": "Ouachita Baptist University", "institution_logo": "https://phagesdb.org/media/institutions/ouachita-baptist-university.jpg", "institution_url": "http://www.obu.edu/", "institution_city": "Arkadelphia", "institution_state": "AR", "institution_country": "USA", "institution_latitude": "34.125830", "institution_longitude": "-93.05277" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Justrace16 had plaques that were generally 2-4 mm in diameter. Although it changed forms a couple times, the plaques have been mostly hazy, indicating a possible temperate phage.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Justrace16_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-13T20:38:18-05:00", "date_modified": "2020-09-17T14:07:45-04:00" }, { "phage_name": "Justus", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from a mountain I hike last summer in Georgia. I hiked over ten mountains that week, but this one was the most biologically diverse one I saw.", "finder_name": "Kristin Stockdale", "found_city": "Bowling Green", "found_state": "KY", "found_country": "USA", "found_GPS_lat": "36.98 N", "found_GPS_long": "86.45 W", "found_year": 2015, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "I found the phage by extracting soil from the surface of an area that had decaying leaves, branches, and plants. The phage was very easy to grow and took between 24-48 hours. The plaques were large and easy to see even though it was turbid. I never had trouble purifying or growing the plaques. ", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Turbid plaques that had a 24 to 48 hour incubation period in 30˚ conditions.", "lysogeny_notes": "It is characterized by the lytic cycle.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": 0, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Justus_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Justus_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Justus_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Justus_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Justus_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-11-10T12:18:29-05:00", "date_modified": "2020-09-17T14:06:49-04:00" }, { "phage_name": "Juvany", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Juju+Evan+Manny = Juvany", "finder_name": "Anthony Wallander, Evan Owen, Manny Armendariz", "found_city": "Crete", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "40.6228 N", "found_GPS_long": "96.9483 W", "found_year": 2018, "p_institution": { "institution_code": "DOAN", "institution_name": "Doane University", "institution_logo": "https://phagesdb.org/media/institutions/DoaneMod.png", "institution_url": "http://www.doane.edu/", "institution_city": "Crete", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.623191", "institution_longitude": "-96.95035" }, "enriched_sample": true, "discovery_notes": "Across from the Lied Science and Mathematics Building, in front of the Communication Building, to the left of the cluster of trees.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Juvany_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Juvany_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-15T22:07:04-05:00", "date_modified": "2020-09-17T14:09:55-04:00" }, { "phage_name": "Jwalker", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Partner j-walked across the street and almost got hit by a car. Thus, the name stuck", "finder_name": "Elshaday Sendek and Lauren Massie", "found_city": "Boulder", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "40.006387 N", "found_GPS_long": "105.261582 W", "found_year": 2014, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "Muddy \r\n-Moist\r\n-Fertile dirt with flowers growing in a bed\r\nUniversity Memorial Center\r\n9/10/14\r\n11:25\r\n\r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Clear plaques\r\n3mm\r\nincubated ~48 hrs. 37 °C\r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Jwalker_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Jwalker_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Jwalker_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jwalker_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2014-11-19T21:15:29-05:00", "date_modified": "2020-09-17T14:05:43-04:00" }, { "phage_name": "JWick", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Vivi Kaminaris and Sabinna Osang", "found_city": "Owings Mills", "found_state": "MD", "found_country": "", "found_GPS_lat": "39.42091 N", "found_GPS_long": "76.77498 W", "found_year": 2023, "p_institution": { "institution_code": "STEV", "institution_name": "Stevenson University", "institution_logo": "https://phagesdb.org/media/institutions/Stevenson_University_logo.png", "institution_url": "https://www.stevenson.edu/", "institution_city": "Owings Mills", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "NRRL B-2880", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-30T11:53:57-05:00", "date_modified": "2024-02-25T15:28:31-05:00" }, { "phage_name": "Kaas", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kenneth Jennings, Gitte Ost, Serina Bush", "found_city": "Land O Lakes", "found_state": "FL", "found_country": "USA", "found_GPS_lat": "28.19851 N", "found_GPS_long": "82.449274 W", "found_year": 2018, "p_institution": { "institution_code": "HLSB", "institution_name": "Hillsborough Community College", "institution_logo": "https://phagesdb.org/media/institutions/HLSB.png", "institution_url": "https://www.hccfl.edu/", "institution_city": "Tampa", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-08T16:08:43-04:00", "date_modified": "2020-09-17T14:10:13-04:00" }, { "phage_name": "Kabluna", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name \"Kabluna\" is an Ihalmiut word for 'invader,' or 'blight.' The Ihalmiut, literally \"People from beyond,\" were a tribe of Inuit Indians who lived in Canada's Kivalliq region, present day Nunavut. The Ihalmiut used the word \"Kabluna\" to describe the diseases (and those who brought disease to them) which ultimately ended their way of life. As such, I thought the name 'Kabluna' apt for a bacteriophage, seeing as they are, from the perspective of the bacterial hosts, also 'invaders,' and 'blights.'", "finder_name": "Solomon Klombers", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.441111 N", "found_GPS_long": "79.954167 W", "found_year": 2016, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Soil sample was retrieved from a Garden box outside of Wesley W. Posvar Hall. Temperature at time of collection was 61 degrees Fahrenheit. Weather conditions in the previous 24 hours were in the mid 40s and clear. Soil sample was collected on January 31st, 2016. Plaques were found using a direct plating procedure. ", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "CR", "temperate": false }, "psubcluster": { "subcluster": "CR2" }, "morphotype": "SIPHO", "plaque_notes": "It appears that Kabluna may have two morphologies. There are lager plaques, roughly 1/10th of a cm in diameter, and smaller plaques roughly 1mm in diameter. ", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-07-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3235, "finishing_reactions": 0, "genome_length": 65869, "gcpercent": "65.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGCCGCGTAC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 95, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kabluna_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2017-08-30T13:55:36-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kabluna_final_flat.txt", "qced_genbank_file_date": "2017-08-30T13:55:36-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MF919510", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kabluna_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kabluna_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kabluna_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kabluna.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kabluna_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kabluna_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-02-11T14:14:04-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kabocha", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The sample was isolated from soil near a rotting kabocha, or Japanese pumpkin, vine.", "finder_name": "Naomi Jones", "found_city": "Alexandria", "found_state": "VA", "found_country": "United States of America", "found_GPS_lat": "38.762808 N", "found_GPS_long": "77.106372 W", "found_year": 2019, "p_institution": { "institution_code": "GEMA", "institution_name": "George Mason University", "institution_logo": "https://phagesdb.org/media/institutions/GeorgeMason_YjNctcY.jpg", "institution_url": "https://www.gmu.edu/", "institution_city": "Fairfax", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Was isolated from my garden in Alexandria VA on September 3rd, 2019", "isolation_temperature": 26, "growth_notes": "", "pcluster": { "cluster": "DQ", "temperate": false }, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "Temperate phage, very small plaques on plate", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2022-07-12", "seq_facility": { "short_name": "NCSTATE", "facility_name": "NC State Genomic Sciences Laboratory", "contact_person": "Jenn Schaff", "shipping_address": "", "facility_website": "http://research.ncsu.edu/gsl/" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 273, "finishing_reactions": 0, "genome_length": 91206, "gcpercent": "60.2", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 129, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kabocha_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kabocha_Minimal_Final_2H49FTS.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kabocha_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kabocha_CoverSheet.pdf", "submitted_annotation_date": "2022-11-17T20:25:58-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kabocha.gbf", "qced_genbank_file_date": "2022-11-17T20:25:58-05:00", "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OP867022", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kabocha.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kabocha.jpg", "dnam_file": null, "date_added": "2019-11-10T12:07:35-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kabreeze", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I always wanted to go down in history so this is a guarantee", "finder_name": "Kabreeze Sheed", "found_city": "Radnor", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.054444 N", "found_GPS_long": "75.366389 W", "found_year": 2015, "p_institution": { "institution_code": "CABR", "institution_name": "Cabrini University", "institution_logo": "https://phagesdb.org/media/institutions/Cabrini-01.jpg", "institution_url": "http://www.cabrini.edu/", "institution_city": "Radnor", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.055648", "institution_longitude": "-75.37448" }, "enriched_sample": true, "discovery_notes": "Found under a tree next to a commonly used road approaching a building on campus on a hot summer day. A very large caterpillar was crawling across the soil at the time of retrieval", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "AR", "temperate": false }, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2015-12-17", "seq_facility": { "short_name": "NCSTATE", "facility_name": "NC State Genomic Sciences Laboratory", "contact_person": "Jenn Schaff", "shipping_address": "", "facility_website": "http://research.ncsu.edu/gsl/" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 720, "finishing_reactions": 0, "genome_length": 70035, "gcpercent": "61.7", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 111, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kabreeze_CompleteNotes_H4mRiS9.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kabreeze_Minimal_Final_jUtMton.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kabreeze_Authors_3lN5qo0.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kabreeze_CoverSheet.pdf", "submitted_annotation_date": "2017-05-30T09:48:09-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kabreeze.gbf", "qced_genbank_file_date": "2017-05-30T09:48:09-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MF185721", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kabreeze_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kabreeze.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kabreeze_EMPic_Thumb.png", "dnam_file": "https://phagesdb.org/media/dnam/Kabreeze.dnam5", "date_added": "2015-08-02T22:44:35-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kabuki", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kabuki is a form of traditional Japanese theatre which is dramatic and expressive. After viewing our phage with the TEM microscope, we felt that our phage possessed these qualities as well. ", "finder_name": "Lucille Lokko & Bri Jefferson", "found_city": "Northampton ", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.197 N", "found_GPS_long": "72.3823 W", "found_year": 2018, "p_institution": { "institution_code": "SMTH", "institution_name": "Smith College", "institution_logo": "https://phagesdb.org/media/institutions/smith_logo200x122.jpg", "institution_url": "http://www.smith.edu/", "institution_city": "Northampton", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.318362", "institution_longitude": "-72.63729" }, "enriched_sample": true, "discovery_notes": "Soil Sample M was collected on the Smith College campus on 9/27/17 between 10am and 12noon. Weather was partly cloudy and 720F. Soil sample M was collected in the Lyman Plant House in the Tropical rainforest room under the banana tree.\r\nFound approximately 1 cm deep in the soil.\r\nSoil was sandy, semi-dry and medium in color.\r\n\r\n", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques produced were clear, relatively large and plentiful which suggests the presence of a lytic phage. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "SMITH", "facility_name": "Smith College", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. 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From same sample as Trike.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Lytic distinct circular", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kabul_plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/kabul_EM.png", "digest_file": "https://phagesdb.org/media/digestPics/kabul_digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kabul_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/kabul_EM_thumb.png", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Kacey314", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kacey means \"thorny tree, alert, and watchful.\" These are all things that were required of us during the process of isolating our phages.", "finder_name": "Cynthia Theodore", "found_city": "Old Westbury", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "40.799263 N", "found_GPS_long": "73.574147 W", "found_year": 2019, "p_institution": { "institution_code": "SUOW", "institution_name": "SUNY Old Westbury", "institution_logo": "https://phagesdb.org/media/institutions/SUNYOldWestbury.png", "institution_url": "https://www.oldwestbury.edu/", "institution_city": "Old Westbury", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "40.782786", "institution_longitude": "-73.57952" }, "enriched_sample": false, "discovery_notes": "Soil sample was gathered under a tree. 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"host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-04-25T13:17:55-04:00", "date_modified": "2020-09-17T14:09:44-04:00" }, { "phage_name": "KADY", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kathrine Yacoo", "found_city": "Warren", "found_state": "MI", "found_country": "USA", "found_GPS_lat": "42.509243 N", "found_GPS_long": "83.005717 W", "found_year": 2015, "p_institution": { "institution_code": "UDTM", "institution_name": "University of Detroit Mercy", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofDetroitMercy.gif", "institution_url": "http://www.udmercy.edu/", "institution_city": "Detroit", "institution_state": "MI", "institution_country": "United States", "institution_latitude": "42.413880", "institution_longitude": "-83.13797" }, "enriched_sample": true, "discovery_notes": "shaded area 92 degrees F outside, soil depth = 1cm", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A3" }, "morphotype": "SIPHO", "plaque_notes": "lytic plaques, 3mm in size", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2015-12-07", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2081, "finishing_reactions": 0, "genome_length": 50898, "gcpercent": "64.2", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGGTGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 87, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KADY_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KADY_Minimal_Final.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/KADY_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/KADY_CoverSheet.pdf", "submitted_annotation_date": "2017-06-02T10:14:20-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KADY.gbf", "qced_genbank_file_date": "2017-06-02T10:14:20-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MF185729", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/KADY_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KADY.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/KADY_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/KADY.dnam5", "date_added": "2015-12-02T09:45:45-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kadzo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage was named after one of the phage hunters Grandmother. It is the surname of a family that originated in Kenya and it has Swahili origins. The name Kadzo is of African origin and means \"Kadzo is a name for a girl child from one of the coastal tribes of the mijikenda in Kenya called giryama kadzo means beautiful or pretty\".", "finder_name": "Cassie Dume and Natalie Delago", "found_city": "Waco", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "31.543601 N", "found_GPS_long": "97.113946 W", "found_year": 2023, "p_institution": { "institution_code": "BAYU", "institution_name": "Baylor University", "institution_logo": "https://phagesdb.org/media/institutions/baylor.jpg", "institution_url": "http://www.baylor.edu/", "institution_city": "Waco", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "31.548499", "institution_longitude": "-97.11843" }, "enriched_sample": false, "discovery_notes": "The phage was found outside of the Arbor Hills apartments on the Baylor University campus.The soil was dry and had little water content. It composed of mostly silt and clay.", "isolation_temperature": 32, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Clear plaques with an average of 1.5 mm in diameter. Evenly spread around the assay", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kadzo_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Kadzo_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-01T15:19:37-05:00", "date_modified": "2024-02-25T15:28:33-05:00" }, { "phage_name": "Kafta", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after a Lebanese dish that I enjoy.", "finder_name": "Mattheo Fakhouri", "found_city": "Ottawa, Ontario", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.453715 N", "found_GPS_long": "75.535768 W", "found_year": 2024, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "The sample was collected on September 17, 2024, at Heritage Park, Orleans. Soil was taken from a depth of 5 cm in a moist, swampy area, with an ambient temperature of 27℃ at the time of collection.", "isolation_temperature": 27, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Very small and clear plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "NRRL B-4225", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kafta_Plaque_qsPs7fq.png", "em_file": "https://phagesdb.org/media/emPics/Kafta_EMPic_YtTuJNR.png", "digest_file": "https://phagesdb.org/media/digestPics/Kafta_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kafta_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-11T14:54:41-04:00", "date_modified": "2025-07-30T16:35:38-04:00" }, { "phage_name": "Kagaroni", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of the phage came from my grandparents names. I took two letters from each of their names and combined them into the name Kagaroni. ", "finder_name": "Emily Grulke", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "53.2734 N", "found_GPS_long": "7.77832 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "This phage was collected from the lawn of the Cathedral of Learning. The soil was very stringy and it was very moist. It was not very far underground. I had used a stick to loosen the soil around it. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques were medium sized. They are about 2mm in diameter. They are clear phages. The plaques are consistently sized. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kagaroni_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kagaroni_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Kagaroni_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kagaroni_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kagaroni_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-10-29T20:16:37-04:00", "date_modified": "2020-09-17T14:08:36-04:00" }, { "phage_name": "Kahirah", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Najjah Lindsey", "found_city": "NW, Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.9217 N", "found_GPS_long": "77.02 W", "found_year": 2017, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": null, "discovery_notes": "Collected from a semi moist soil sample about 15 1/2 feet to the right of the EE Just Biology building. ", "isolation_temperature": 20, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-09-11T10:17:34-04:00", "date_modified": "2020-09-17T14:08:21-04:00" }, { "phage_name": "Kahlid", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My name is Kahlid and i like my name so much and it is something that is very unique. Plus i want it to be remember exactly by me.", "finder_name": "Kahlid Fowlkes", "found_city": "Atlanta", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "33.748676 N", "found_GPS_long": "84.415321 W", "found_year": 2016, "p_institution": { "institution_code": "MORE", "institution_name": "Morehouse College", "institution_logo": "https://phagesdb.org/media/institutions/Morehouse_Logo.jpg", "institution_url": "http://www.morehouse.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.746175", "institution_longitude": "-84.41438" }, "enriched_sample": true, "discovery_notes": "Was chosen on hot day. The temperature was 86 degrees Fahrenheit. The soil was dry. The depth was 3 cm.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "L", "temperate": true }, "psubcluster": { "subcluster": "L2" }, "morphotype": "SIPHO", "plaque_notes": "Plaques were great in size. Width- 1.207mm, length-1.242mm, and diameter-1.181.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-01-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1580, "finishing_reactions": 0, "genome_length": 75952, "gcpercent": "58.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "TCGATCAGCC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 129, "num_tRNAs": 12, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kahlid_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-10-14T20:28:51-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kahlid.gbf", "qced_genbank_file_date": "2019-10-14T20:28:51-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN586052", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kahlid_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kahlid.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kahlid_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Kahlid.dnam5", "date_added": "2016-11-22T09:25:16-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kahlil", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after esteemed poet Khalil Gibran, whose name was misspelled \"Kahlil\" upon emigrating to the U.S. Also named after esteemed biology undergrad Jonah Kahlil Pfeiffer", "finder_name": "Jonah Pfeiffer", "found_city": "Denton", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.2123 N", "found_GPS_long": "97.1489 W", "found_year": 2018, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "soil was moist, dark, mostly loam, no clay, from the garden outside UNT's Life Science Complex", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques range from .1-2mm, all sphere shapes, some amalgamations, plaques are clear not cloudy", "lysogeny_notes": "Not tested for lysogeny", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kahlil_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kahlil_EMPic.png", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kahlil_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-31T14:24:29-04:00", "date_modified": "2020-09-17T14:09:40-04:00" }, { "phage_name": "KahlMeMaybe", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This name came from a combination of my last name and a Taylor Swift song called call me maybe.", "finder_name": "Ryan Kahl", "found_city": "PoundRidge", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "NYAK", "institution_name": "Alliance University (formerly Nyack College)", "institution_logo": "https://phagesdb.org/media/institutions/AllianceUniversity.png", "institution_url": "https://allianceu.edu/", "institution_city": "New York", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KahlMeMaybe_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KahlMeMaybe_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-12-16T20:34:55-05:00", "date_modified": "2020-09-17T14:09:28-04:00" }, { "phage_name": "Kahlo", "old_names": "XxXx", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Hayden Schooley and Ben Sheneman", "found_city": "Boulder", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "40.002707 N", "found_GPS_long": "105.262649 W", "found_year": 2017, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/XxXx_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/XxXx_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/XxXx_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kahlo_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-12-13T07:52:41-05:00", "date_modified": "2020-09-17T14:08:51-04:00" }, { "phage_name": "Kahve", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kahve is Turkish for coffee; I have Turkish roots", "finder_name": "Sarah Raad Abdulrazaq Al Khayyat", "found_city": "Bowling Green", "found_state": "KY", "found_country": "USA", "found_GPS_lat": "37.001111 N", "found_GPS_long": "86.430278 W", "found_year": 2017, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "It was isolated from a sample of soil alongside the Barren River riverbank", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B1" }, "morphotype": "SIPHO", "plaque_notes": "Clear plaques", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-01-19", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 362, "finishing_reactions": 0, "genome_length": 69031, "gcpercent": "66.5", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 102, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kahve_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-05-17T17:40:32-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kahve_flat.txt", "qced_genbank_file_date": "2018-05-17T17:40:32-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH371117", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kahve_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kahve_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Kahve_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kahve.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kahve_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kahve_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-10-06T11:11:42-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kai316", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name was chosen because I enjoy the name Kai, and 316 is an anniversary date personal to me. ", "finder_name": "Aida Cheung", "found_city": "Bloomington", "found_state": "IL", "found_country": "USA", "found_GPS_lat": "40.491398 N", "found_GPS_long": "88.983717 W", "found_year": 2014, "p_institution": { "institution_code": "ILWU", "institution_name": "Illinois Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/logo-iwu_.jpg", "institution_url": "http://www.iwu.edu/", "institution_city": "Bloomington", "institution_state": "IL", "institution_country": "USA", "institution_latitude": "40.491190", "institution_longitude": "-88.99027" }, "enriched_sample": null, "discovery_notes": "Sample was found in an urban area in the suburbs. Sample was located right next to the cement in a grassy area. The sample was found 5 cm deep in a moist area during a 78 degree F weather day. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are on the smaller side and are relatively clear to look through. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kai316_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kai316_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kai316_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2014-11-18T21:50:47-05:00", "date_modified": "2020-09-17T14:05:48-04:00" }, { "phage_name": "KaiaF", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage was named after its founder. The name Kaia is derived from the Greek word meaning \"the earth\" or \"from the earth, which is fitting for a sample collected from soil, which makes up around 10% of the Earth's surface. The name also represents the founder, who is dedicated to all that she does and is passionate about the STEM field.", "finder_name": "Kaia Frazier", "found_city": "Wesley Chapel", "found_state": "FL", "found_country": "United States", "found_GPS_lat": "28.26902 N", "found_GPS_long": "82.32336 W", "found_year": 2023, "p_institution": { "institution_code": "USFL", "institution_name": "University of South Florida", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofSouthFlorida.jpg", "institution_url": "http://www.usf.edu/", "institution_city": "Tampa", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "28.058438", "institution_longitude": "-82.41395" }, "enriched_sample": true, "discovery_notes": "Collected soil on sunny and clear day with a temperature of 27°C. Soil was dry and dark brown with remnants of sand.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are small and temperate (cloudy and turbid).", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-20T08:34:43-04:00", "date_modified": "2024-02-25T15:28:18-05:00" }, { "phage_name": "Kaialro", "old_names": "Alkai", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is a mixture of the first half of both our names", "finder_name": "Kairo Calcano, Alie Kamara", "found_city": "Easton", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.696416 N", "found_GPS_long": "75.209657 W", "found_year": 2025, "p_institution": { "institution_code": "LAFA", "institution_name": "Lafayette College", "institution_logo": "https://phagesdb.org/media/institutions/Lafayette.png", "institution_url": "http://www.lafayette.edu/", "institution_city": "Easton", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "40.698482", "institution_longitude": "-75.20955" }, "enriched_sample": false, "discovery_notes": "The sample was collected by one of our dorms at a near by field out in the open that only had grass on it, with a tree in the somewhat near distance", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Phage morphology was vast and diverse, with there being multiple dots encompassing the plaque, each ranging in size, length, and turbidity. Some were large, some were small, some were long, others were short, and so on. Majority of these were all grouped up together as well.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-04-14T09:49:06-04:00", "date_modified": "2025-04-14T09:49:51-04:00" }, { "phage_name": "Kaiden", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kaide Udit and Denys Sanchez", "found_city": "Montclair", "found_state": "NJ", "found_country": "USA", "found_GPS_lat": "40.8591 N", "found_GPS_long": "74.1987 W", "found_year": 2015, "p_institution": { "institution_code": "MCSU", "institution_name": "Montclair State University", "institution_logo": "https://phagesdb.org/media/institutions/msu_.jpg", "institution_url": "http://www.montclair.edu/", "institution_city": "Montclair", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "40.861767", "institution_longitude": "-74.19856" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 74, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kaiden_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kaiden_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-12-02T13:18:11-05:00", "date_modified": "2020-09-17T14:06:43-04:00" }, { "phage_name": "Kaidontomous", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name 'Kaidontomous' comes from common gaming screen name used by the founder. The name essentially has a meaning of a fearless and intimidating warrior who uses strategy to succeed.", "finder_name": "CheVonni L. Brown", "found_city": "Gettysburg", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2014, "p_institution": { "institution_code": "GTTY", "institution_name": "Gettysburg College", "institution_logo": "https://phagesdb.org/media/institutions/Gettysburg_College.png", "institution_url": "http://www.gettysburg.edu/", "institution_city": "Gettysburg", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "39.836144", "institution_longitude": "-77.23780" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-11-03T09:55:56-05:00", "date_modified": "2020-09-17T14:06:04-04:00" }, { "phage_name": "KaiHaiDragon", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named the phage KaiHaiDragon as my Chinese middle character is Kai, my father's middle Chinese character is Hai, and my father's last Chinese character means dragon. I wanted my dad to be a part of my phage name as he has been a big reason in me getting to where I am now and it was only right that I choose a name that had a part of both him and me in it. ", "finder_name": "Steven Tran", "found_city": "Riverside", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "33.9099 N", "found_GPS_long": "117.5013 W", "found_year": 2018, "p_institution": { "institution_code": "LASI", "institution_name": "La Sierra University", "institution_logo": "https://phagesdb.org/media/institutions/LaSierra_Deah4d4.jpg", "institution_url": "https://lasierra.edu/", "institution_city": "Riverside", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "33.912017", "institution_longitude": "-117.4995" }, "enriched_sample": false, "discovery_notes": "The phage was discovered from a soil sample from La Sierra University behind South Hall. The soil sample was taken approximately 6 feet away from the dumpster and 10 feet away from the fire hydrant. The soil sample was taken from a spot between the plants and the grass where there was a lot of dirt that had accumulated. The temperature was 52 degrees Fahrenheit with light drizzle. The soil sample was taken very near the surface as the roots of the plants and the grass made it difficult to get deep into the soil. The soil sample itself was very cold, moist, and filled with organic matter. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "EC", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques were very small, measuring about 0.1 mm in diameter. The phages were clear and were virulent phages as the plaques were clear. ", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-03-26", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1039, "finishing_reactions": 0, "genome_length": 52992, "gcpercent": "68.9", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 92, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KaiHaiDragon_CompleteNotes_5luDdbg.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KaiHaiDragon_Minimal_Final_G2dWT5g.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/KaiHaiDragon_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/KaiHaiDragon_CoverSheet.pdf", "submitted_annotation_date": "2018-07-04T23:44:00-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KaiHaiDragon_Flat.txt", "qced_genbank_file_date": "2018-07-04T23:44:01-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH590600", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KaiHaiDragon_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KaiHaiDragon_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KaiHaiDragon.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KaiHaiDragon_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KaiHaiDragon_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-03-14T08:39:53-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kaii", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Trevor Ouellette and Amber Gabriel", "found_city": "Fort Kent", "found_state": "ME", "found_country": "USA", "found_GPS_lat": "47.25043 N", "found_GPS_long": "68.58687 W", "found_year": 2012, "p_institution": { "institution_code": "UMFK", "institution_name": "University of Maine, Fort Kent", "institution_logo": "https://phagesdb.org/media/institutions/umfk.jpg", "institution_url": "http://www.umfk.maine.edu/", "institution_city": "Fort Kent", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "47.249851", "institution_longitude": "-68.59010" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kaii_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kaii_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kaii_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kaii_EMPic_Thumbs.png", "dnam_file": null, "date_added": "2012-12-12T14:31:03-05:00", "date_modified": "2020-07-14T16:39:49-04:00" }, { "phage_name": "KaijaJr", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kaija Powell", "found_city": "Washington, DC", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2018, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "In front of Howard University's CNAHS (College of Nursing and Health Sciences) building, near ruptured steam tunnel.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-09-28T12:22:30-04:00", "date_modified": "2020-09-17T14:10:06-04:00" }, { "phage_name": "Kaijohn", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Came from my name when you say it fast", "finder_name": "Kaishon Showers", "found_city": "San Antonio", "found_state": "FL", "found_country": "USA", "found_GPS_lat": "28.336833 N", "found_GPS_long": "82.264917 W", "found_year": 2018, "p_institution": { "institution_code": "SLEO", "institution_name": "Saint Leo University", "institution_logo": "https://phagesdb.org/media/institutions/SLEO.png", "institution_url": "http://www.saintleo.edu/", "institution_city": "Saint Leo", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "EE", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "1 - 2 mm in size and are slightly cloudy", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-12-14", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2793, "finishing_reactions": 0, "genome_length": 17426, "gcpercent": "68.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CCCGCCCCA", "sequencing_notes": "In the sequencing reads for this project, there was a low level (~5%) of a Cluster EK phage, which was assumed to be a low-level contaminant.", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 25, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kaijohn_CompleteNotes_KRhVaHi.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kaijohn_Minimal_Final_dsTkoUM.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kaijohn_Authors_PmikQkC.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kaijohn_CoverSheet_UTGAGb2.pdf", "submitted_annotation_date": "2019-08-02T12:21:58-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kaijohn_flat.txt", "qced_genbank_file_date": "2019-08-02T12:21:58-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN369745", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kaijohn_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kaijohn.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-12-09T08:36:52-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kaiju", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kaiju means monster in Japan, so we thought it would be ironic to name the phage Kaiju as a monster of the host bacteria.", "finder_name": "Elias Herrera, Isaac Coy", "found_city": "Pullman", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "46.745039 N", "found_GPS_long": "117.155856 W", "found_year": 2023, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "Found under a shrub beside a walking trail. Soil depth of 1-2 cm with very moist soil. Soil was covered in snow with an outside temp of 34.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small, round, clear plaques. Some plaques will clump together to form larger plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-04-18T14:27:37-04:00", "date_modified": "2023-04-18T14:27:37-04:00" }, { "phage_name": "KaiLan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kai Lan is the Chinese name for Chinese broccoli. It is the plant grown in my dad's garden, where I told the soil sample.", "finder_name": "Kristy Yung", "found_city": "Fairfax", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "38.878 N", "found_GPS_long": "77.254 W", "found_year": 2022, "p_institution": { "institution_code": "GEMA", "institution_name": "George Mason University", "institution_logo": "https://phagesdb.org/media/institutions/GeorgeMason_YjNctcY.jpg", "institution_url": "https://www.gmu.edu/", "institution_city": "Fairfax", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-02T08:32:41-04:00", "date_modified": "2024-02-25T15:28:05-05:00" }, { "phage_name": "Kailash", "old_names": "KMY092016", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Maanasa Natrajan", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "39.958948 N", "found_GPS_long": "75.189968 W", "found_year": 2016, "p_institution": { "institution_code": "DRXL", "institution_name": "Drexel University", "institution_logo": "https://phagesdb.org/media/institutions/logo-drexel.jpg", "institution_url": "http://drexel.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Soil Sample collected on 20th September 2016 at 11:23AM.\r\nDepth of soil dug: 3.5cm\r\nApproximate Temperature: 24 degree Celsius\r\nGeneral Location- Near a tree in front of Myers Hall.\r\nSoil was slightly wet due to rain on the previous day. A lot of twigs, roots and some stones and fallen leaves were found in the soil and the soil was dark in color.\r\n", "isolation_temperature": 24, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B1" }, "morphotype": "SIPHO", "plaque_notes": "Plaque size: 4mm diameter\r\nPlaque shape: Circular/ Round", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-12-19", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1518, "finishing_reactions": 0, "genome_length": 68953, "gcpercent": "66.3", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 100, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kailash_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kailash_Minimal_Final_mC2p1Qh.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kailash_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kailash_CoverSheet.pdf", "submitted_annotation_date": "2017-08-11T13:16:10-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kailash_flat_KyByWyR.txt", "qced_genbank_file_date": "2017-08-16T13:38:53-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MF919511", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kailash_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kailash_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kailash_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kailash.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/plaque_.png", "em_thumb_file": "https://phagesdb.org/media/emPics/phage.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Kailash_093aoXb.dnam5", "date_added": "2016-11-28T07:33:00-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kaima", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I combined the names of my two dogs.", "finder_name": "Adyson Furlong", "found_city": "Manhattan", "found_state": "KS", "found_country": "United States", "found_GPS_lat": "39.1893 N", "found_GPS_long": "96.5964 W", "found_year": 2020, "p_institution": { "institution_code": "KSSU", "institution_name": "Kansas State University", "institution_logo": "https://phagesdb.org/media/institutions/kstate.jpg", "institution_url": "http://www.k-state.edu/", "institution_city": "Manhattan", "institution_state": "KS", "institution_country": "United States", "institution_latitude": "39.197485", "institution_longitude": "-96.58606" }, "enriched_sample": true, "discovery_notes": "I collected this sample outside my house under a bush. I dug about 1 inch under the top of the soil before collecting my sample. The sample was pretty dry and full of organic matter. To collect my sample, I had to dig around some roots and there was even a point where a worm was in my way. The soil was dark brown and collected at 9:00 am on 08/25/2020.", "isolation_temperature": 32, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques for this phage are very small in diameter, but there are always lots of them across the plate. they are pretty evenly spaced, but basically there are just lots of little dots throughout my plate.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "CAG3", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isoniazid-resistant mutant of G terrae 3612" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kaima_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kaima_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kaima_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2020-11-03T11:40:25-05:00", "date_modified": "2021-01-28T11:04:13-05:00" }, { "phage_name": "Kaine", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My brother is an Artist and he goes by the name Nolan Kaine.", "finder_name": "Andrew Kihwili", "found_city": "Little Elm", "found_state": "TX", "found_country": "United States of America", "found_GPS_lat": "33.15595 N", "found_GPS_long": "96.94897 W", "found_year": 2024, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "I Collected soil from (33.15595°N, 96.94897°W) at Little Elm Park in Little Elm, Texas. The temperature was approximately 1.11°C with a humidity of 77% at 11:03 pm. The location was near the top of a hill that led down to Lake Lewisville. I chose a location where the soil was exposed and no grass was growing. The soil was muddy/damp due to the weather and location. I dug 1-2cm below the surface and collected a full bag worth of soil.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "BD", "temperate": true }, "psubcluster": { "subcluster": "BD3" }, "morphotype": "SIPHO", "plaque_notes": "The diameter of the plaques were around 1mm and clear and circular", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-07-02", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 5753, "finishing_reactions": 0, "genome_length": 48825, "gcpercent": "65.8", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CGGTACGTGAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 76, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kaine_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2024-11-10T18:53:45-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kaine_flat.txt", "qced_genbank_file_date": "2024-11-10T18:53:45-05:00", "isolation_host": { "genus": "Streptomyces", "species": "bicolor", "strain_name": "NRRL B-3897", "strain_species": { "id": 74, "genus": "Streptomyces", "species_name": "bicolor", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 74, "genus": "Streptomyces", "species_name": "bicolor", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PQ723753", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kaine_Plaque.png", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kaine_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kaine.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-03-28T12:08:03-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kaira", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kaira comes from a combination of what I would name my children, Malachi (Kai-) and Moira (-ira), therefore Kaira.", "finder_name": "Gabriel Strong-Lundquist", "found_city": "Las Vegas", "found_state": "NV", "found_country": "USA", "found_GPS_lat": "36.13139 N", "found_GPS_long": "115.24001 W", "found_year": 2022, "p_institution": { "institution_code": "UNLV", "institution_name": "University of Nevada Las Vegas", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofNevadaLasVegas.jpg", "institution_url": "https://www.unlv.edu/", "institution_city": "Las Vegas", "institution_state": "NV", "institution_country": "USA", "institution_latitude": "36.108190", "institution_longitude": "-115.1431" }, "enriched_sample": true, "discovery_notes": "The enriched sample was collected from a sample that Dr. Regner had on hand which came from a spider plant, genus Chlorophytum.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kaira_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kaira_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-02T07:56:33-04:00", "date_modified": "2024-02-25T15:28:06-05:00" }, { "phage_name": "Kairat", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Malakai Rattley", "found_city": "Aston", "found_state": "PA", "found_country": "United states", "found_GPS_lat": "39.5231 N", "found_GPS_long": "75.2624 W", "found_year": 2022, "p_institution": { "institution_code": "NUMN", "institution_name": "Neumann University", "institution_logo": "https://phagesdb.org/media/institutions/NUMN.png", "institution_url": "https://www.neumann.edu/", "institution_city": "Aston", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Big plaque, 2-4 mm in size", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kairat_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kairat_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-17T09:16:44-05:00", "date_modified": "2024-02-25T15:27:51-05:00" }, { "phage_name": "Kairos", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage was found at a specific time and place. Kairos(καιρός) refers to the qualitative and opportune aspects of time, suggesting a moment when conditions are right for something specific to happen.", "finder_name": "Catherine Léger", "found_city": "Ottawa", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.42168 N", "found_GPS_long": "75.682377 W", "found_year": 2023, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "The Kairos bacteriophage was discovered in the moist soil of a flower bed at the heart of the University of Ottawa's main campus.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaque morphology of bacteriophage Kairos is characterized by clear, small diameter, round plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kairos_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kairos_EMPic_EC2e2Tl.png", "digest_file": "https://phagesdb.org/media/digestPics/Kairos_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kairos_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2023-10-12T10:37:13-04:00", "date_modified": "2025-07-30T16:37:05-04:00" }, { "phage_name": "Kaisen", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Brianna Figueroa", "found_city": "Tampa", "found_state": "FL", "found_country": "Tampa", "found_GPS_lat": "28.147778 N", "found_GPS_long": "81.980556 W", "found_year": 2022, "p_institution": { "institution_code": "USFL", "institution_name": "University of South Florida", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofSouthFlorida.jpg", "institution_url": "http://www.usf.edu/", "institution_city": "Tampa", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "28.058438", "institution_longitude": "-82.41395" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": 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"institution_url": "http://www.baylor.edu/", "institution_city": "Waco", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "31.548499", "institution_longitude": "-97.11843" }, "enriched_sample": true, "discovery_notes": "from a compost pile", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Turbid, 4 mm", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kaiser_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kaiser_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kaiser_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kaiser_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kaiser_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-11-23T06:43:17-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "KaiSo", "old_names": "SKaiB", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A combination of the names of the two students who discovered this specific phage.", "finder_name": "Kailey Leclerc and Sophia McGonagle", "found_city": "North Andover", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.66918 N", "found_GPS_long": "71.12245 W", "found_year": 2022, "p_institution": { "institution_code": "MERI", "institution_name": "Merrimack College", "institution_logo": "https://phagesdb.org/media/institutions/14169_mc_centered_rgb.png", "institution_url": "http://www.merrimack.edu/", "institution_city": "North Andover", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.667953", "institution_longitude": "-71.12257" }, "enriched_sample": true, "discovery_notes": "The location where the soil was collected is at a tree in front of the Mendel Pond at Merrimack College in North Andover, MA. The conditions that day were partly cloudy, 70°F with 61% humidity. The soil was a brown color with small bits of turquoise fertilizer, \r\nmulch, bark, and leaves in it. The soil was dry, as there was no prior precipitation. The soil was initially disturbed by the test tube given in class, and the tube was used to loosen the soil. The tube given in class was used as a vessel to directly scoop up approximately 15mL of soil. The \r\nsoil was collected on the way to class and was brought directly inside to the lab after collection.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are turbid, but a little clear as well. There are quite a bit of plaques on the plate and the majority of them are around 0.1 cm or smaller in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, 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"digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-17T15:32:16-05:00", "date_modified": "2024-02-25T15:27:51-05:00" }, { "phage_name": "Kaja", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kaja is our initials put together.", "finder_name": "Hampshire Dining Commons", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.383382 N", "found_GPS_long": "72.530138 W", "found_year": 2022, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Dirt found behind Hampshire Dining Hall", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "1 mm dark and circular", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, 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"" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-09-20T14:16:18-04:00", "date_modified": "2020-09-17T14:10:06-04:00" }, { "phage_name": "Kakar", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Rozina ", "found_city": "Manhattan", "found_state": "KS", "found_country": "USA", "found_GPS_lat": "39.192512 N", "found_GPS_long": "96.584249 E", "found_year": 2017, "p_institution": { "institution_code": "KSSU", "institution_name": "Kansas State University", "institution_logo": "https://phagesdb.org/media/institutions/kstate.jpg", "institution_url": "http://www.k-state.edu/", "institution_city": "Manhattan", "institution_state": "KS", "institution_country": "United States", "institution_latitude": "39.197485", "institution_longitude": "-96.58606" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A2" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": "2018-01-12", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 737, "finishing_reactions": 0, "genome_length": 52724, "gcpercent": "63.5", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTCGGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-09T08:13:26-05:00", "date_modified": "2020-09-17T14:08:06-04:00" }, { "phage_name": "Kakarot", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kakarot is a unique twist on \"carrot,\" just like the name of the animated character Goku. We thought our phage looked like a mutated carrot.", "finder_name": "Ashley Lee and Ajay Guduputi", "found_city": "St. Louis", "found_state": "MO", "found_country": "United States", "found_GPS_lat": "38.64375 N", "found_GPS_long": "90.313611 W", "found_year": 2020, "p_institution": { "institution_code": "WUSL", "institution_name": "Washington University in St. Louis", "institution_logo": "https://phagesdb.org/media/institutions/WashU2_.jpg", "institution_url": "http://www.wustl.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.649087", "institution_longitude": "-90.31083" }, "enriched_sample": null, "discovery_notes": "On school campus (outside Mudd residential house); found near rocks along the sidewalk; 6cm depth in the soil", "isolation_temperature": 58, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "lividans", "strain_name": "JI 1326", "strain_species": { "id": 3, "genus": "Streptomyces", "species_name": "lividans", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 3, "genus": "Streptomyces", "species_name": "lividans", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kakarot_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kakarot_EMPic_thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2020-12-02T15:23:14-05:00", "date_modified": "2020-12-21T16:13:50-05:00" }, { "phage_name": "Kakashi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name 'Kakashi' comes from the Naruto anime character. 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The soil sample was dug 3 cm before being collected.", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques are large and cloudy, which indicates the phage may be temperate.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "NRRL B-2880", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kakashi_Plaque.PNG", "em_file": "https://phagesdb.org/media/emPics/Kakashi_EMPic.PNG", "digest_file": "https://phagesdb.org/media/digestPics/Kakashi_Digest.PNG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-18T09:59:55-04:00", "date_modified": "2022-03-16T11:01:44-04:00" }, { "phage_name": "Kalabar", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Bailey Baker", "found_city": "Harrisonburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2018, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison 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"submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "sp.", "strain_name": "ISAT203", "strain_species": { "id": 85, "genus": "Microbacterium", "species_name": "sp.", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 85, "genus": "Microbacterium", "species_name": "sp.", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-17T12:08:52-05:00", "date_modified": "2024-02-25T15:28:18-05:00" }, { "phage_name": "Kaladin", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is the name of a character in a the book The Way of Kings.", "finder_name": "Drake Neilands", "found_city": "Holland", "found_state": "MI", "found_country": "USA", "found_GPS_lat": "42.7685 N", "found_GPS_long": "86.165996 W", "found_year": 2012, "p_institution": { 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"USA", "found_GPS_lat": "38.590783 N", "found_GPS_long": "90.34484 W", "found_year": 2016, "p_institution": { "institution_code": "WBST", "institution_name": "Webster University", "institution_logo": "https://phagesdb.org/media/institutions/WebsterU.jpg", "institution_url": "http://www.webster.edu/", "institution_city": "Webster Groves", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.589104", "institution_longitude": "-90.34342" }, "enriched_sample": false, "discovery_notes": "dug under the mulch, next to a tree and building", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "J", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "large plaques, halo", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-12-16", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford 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{ "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kalaji_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kalaji_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kalaji_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2014-07-30T15:00:24-04:00", "date_modified": "2020-07-24T16:17:47-04:00" }, { "phage_name": "Kalamazoo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Lindsay Robinson", "found_city": "Lewisburg", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "41 N", "found_GPS_long": "76 W", "found_year": 2011, "p_institution": { "institution_code": "BUCK", "institution_name": "Bucknell University", "institution_logo": "https://phagesdb.org/media/institutions/Bucknell.jpg", "institution_url": "http://www.bucknell.edu/", "institution_city": "Lewisburg", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.955364", "institution_longitude": "-76.88495" }, "enriched_sample": true, "discovery_notes": "Base of tree, no mulch, surface soil", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Average size: 2.4 mm, Turbid with slight halo", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2011-10-05T16:06:43-04:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Kalaney", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Neyda Carrillo, Katelyn Diaz, Laura Wolfe", "found_city": "Northampton", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.320165 N", "found_GPS_long": "72.636925 W", "found_year": 2019, "p_institution": { "institution_code": "SMTH", "institution_name": "Smith College", "institution_logo": "https://phagesdb.org/media/institutions/smith_logo200x122.jpg", "institution_url": "http://www.smith.edu/", "institution_city": "Northampton", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.318362", "institution_longitude": "-72.63729" }, "enriched_sample": null, "discovery_notes": "Phage D was collected in the garden outside of Lamont House’s side door. It’s latitude is 42.320165159220174, and its longitude is -72.63692513115018. The sample was collected at 9:06pm, and was collected on 09/16/19. The weather was 64°F, and the soil was moist and sandy dirt.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "plaques appeared to be big and transparent.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kalaney_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kalaney_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-29T21:59:20-04:00", "date_modified": "2020-07-07T13:34:51-04:00" }, { "phage_name": "Kalani", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of this phage came from a combination of my partner and I's first names.", "finder_name": "Leilani Creft & Kattie Perez-Santos", "found_city": "Plattsburgh", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "44.691068 N", "found_GPS_long": "73.46663 W", "found_year": 2020, "p_institution": { "institution_code": "SNYP", "institution_name": "State University of New York-Plattsburgh", "institution_logo": "https://phagesdb.org/media/institutions/PlattsburghSeal.png", "institution_url": "", "institution_city": "Plattsburgh", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "My collection of the soil came from soil that was damp and mushy.", "isolation_temperature": 16, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-11-17T14:07:52-05:00", "date_modified": "2021-01-28T11:04:16-05:00" }, { "phage_name": "Kalb97", "old_names": "", "program": { "short_name": "KBRIN", "program_name": "Kentucky Biomedical Infrastructure Network Small Genomes Discovery Program", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Kasey Baldridge", "found_city": "Morehead", "found_state": "KY", "found_country": "USA", "found_GPS_lat": "38.184444 N", "found_GPS_long": "83.434167 W", "found_year": 2016, "p_institution": { "institution_code": "MHDK", "institution_name": "Morehead State University", "institution_logo": "https://phagesdb.org/media/institutions/Morehead_State_University_Seal-01.png", "institution_url": "http://www.moreheadstate.edu/", "institution_city": "Morehead", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "An alignment of Kalb97 with one of it's closest relatives, Marius, show that Kalb97 has suffered a 630 bp deletion at base 44554. This deletion removes about 266 bp from the 5' end of gene 79 of Marius (Kalb97 gene 76), which is the immunity repressor, and about 10 bp from the 3' end of gene 80 in Marius (Kalb97 gene 77). Therefore the termination site is deleted in Kalb97 gene 77, thus allowing the reading frame to continue. The space for a promoter/regulation and the translation start site for Kalb97 gene 76 as well as about half the N-termal end of the immunity repressor coding region is missing and therefore it is doubtful if this phage has any immunity regulation. The Phagesdb entry for Kalb97 lists it as a Temperate phage but the plaque pictures look to be clear plaques. The deletion is also evident in the NCBI BLAST results where the T:Q From is 90:1 for Marius.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A3" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-08-23", "seq_facility": null, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 315, "finishing_reactions": 0, "genome_length": 49943, "gcpercent": "64.1", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGGTGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 89, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kalb97_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-10-22T14:44:15-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kalb97_flat.txt", "qced_genbank_file_date": "2018-10-22T14:44:15-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK112543", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kalb97_Plaque_T806X01.jpg", "em_file": "https://phagesdb.org/media/emPics/Kalb97_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kalb97.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kalb97_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-06-07T11:01:17-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kale", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "Named after my love of kale. ", "finder_name": "Alyssa Betsko", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.445 N", "found_GPS_long": "79.95271 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Soil was taken from under a tree.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "EA", "temperate": false }, "psubcluster": { "subcluster": "EA1" }, "morphotype": "SIPHO", "plaque_notes": "Large and small, clear plaques.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-08-22", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1249, "finishing_reactions": 0, "genome_length": 41558, "gcpercent": "63.4", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 62, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kale.gbf", "qced_genbank_file_date": "2018-01-21T20:44:32-05:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MG839020", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kale_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kale_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kale.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kale_plaquepic_thumb.png", "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Kale.dnam5", "date_added": "2017-06-23T10:06:20-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kale18", "old_names": "Kaz18", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Both names start with K and used a favorite number", "finder_name": "Kayla Marchant and Kyle Pones", "found_city": "Kenosha", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "42.616 N", "found_GPS_long": "87.8357 W", "found_year": 2018, "p_institution": { "institution_code": "CRTH", "institution_name": "Carthage College", "institution_logo": "https://phagesdb.org/media/institutions/Carthage-vert-2c.png", "institution_url": "http://www.carthage.edu/", "institution_city": "Kenosha", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "42.624596", "institution_longitude": "-87.81996" }, "enriched_sample": false, "discovery_notes": "Corner of 22nd Ave and 24th Street (White House)\r\nFront lawn all the way to the left\r\nDry soil with lots of grass\r\nUnder a bush\r\nBrownish/golden green grass", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-15T15:00:40-04:00", "date_modified": "2020-09-17T14:09:47-04:00" }, { "phage_name": "Kale97", "old_names": "AlliCat", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Alli Mahonski", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.44167 N", "found_GPS_long": "79.950278 E", "found_year": 2016, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "The soil was under a tree covered with lots of leaves and near the roots. The weather on the day of collection was rainy and 55 degrees F. The soil was clay-like and moist.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kale97_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kale97_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kale97_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kale97_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kale97_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-03-24T08:30:12-04:00", "date_modified": "2020-07-27T14:08:11-04:00" }, { "phage_name": "Kaleb", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Name Kaleb play on words for its discovery location, a kale garden", "finder_name": "Skylar Walters", "found_city": "Providence", "found_state": "RI", "found_country": "United States", "found_GPS_lat": "41.827806 N", "found_GPS_long": "72.402278 W", "found_year": 2022, "p_institution": { "institution_code": "BRWN", "institution_name": "Brown University", "institution_logo": "https://phagesdb.org/media/institutions/brown_logo2.jpg", "institution_url": "http://www.brown.edu/", "institution_city": "Providence", "institution_state": "RI", "institution_country": "USA", "institution_latitude": "41.827013", "institution_longitude": "-71.40255" }, "enriched_sample": true, "discovery_notes": "Taken from a kale and greens garden bed in Providence, RI in the College Hill neighborhood.\r\nSoil enriched with compost. Sample was relatively airy, with a variety of textures and sand.\r\nSunny, warm ~80s F temperature, sampled 9/21/2022", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B2" }, "morphotype": "SIPHO", "plaque_notes": "Small, clear circular plaques\r\nlytic plaques", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2023-02-14", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1004, "finishing_reactions": 0, "genome_length": 67503, "gcpercent": "68.9", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 92, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kaleb_Plaque.HEIC", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kaleb.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-12-12T08:59:00-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kaleidoscopic", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Keishonna Belcher", "found_city": "Washington DC", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.920278 N", "found_GPS_long": "77.017778 W", "found_year": 2018, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-09-20T14:49:27-04:00", "date_modified": "2020-09-17T14:10:06-04:00" }, { "phage_name": "KalEl", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after Superman's birth name on Krypton.", "finder_name": "Trudy Hindman and Ethan Amaro", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.66579 N", "found_GPS_long": "117.40352 W", "found_year": 2023, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KalEl_Plaque.JPG", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/KalEl_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-01T16:12:30-05:00", "date_modified": "2024-10-08T10:20:07-04:00" }, { "phage_name": "KaleOfDuty", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the plant that was planted in the soil where the phage was found and used a pun to reference a video game.", "finder_name": "Rachel Smith & Anna Le", "found_city": "Allen", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.106077 N", "found_GPS_long": "96.687888 W", "found_year": 2018, "p_institution": { "institution_code": "CLNC", "institution_name": "Collin College", "institution_logo": "https://phagesdb.org/media/institutions/CollinCollege_QGpldZv.jpg", "institution_url": "http://www.collin.edu/", "institution_city": "Plano", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.218037", "institution_longitude": "-96.64176" }, "enriched_sample": false, "discovery_notes": "We found the phage in soil where kale is grown. Slight moist soil, 74 degrees F outside. ", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Very small, clear, round plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KaleOfDuty_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/KaleOfDuty_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/KaleOfDuty_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KaleOfDuty_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KaleOfDuty_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-11-11T21:27:31-05:00", "date_modified": "2020-09-17T14:10:17-04:00" }, { "phage_name": "Kali", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "After lysogen testing, EM imaging, and restriction digest suggested that this phage is lytic, it was named Kali after the hindu goddess associated with death.", "finder_name": "Michael Kiflezghi", "found_city": "Richmond", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2012, "p_institution": { "institution_code": "VACU", "institution_name": "Virginia Commonwealth University", "institution_logo": "https://phagesdb.org/media/institutions/VCU.jpg", "institution_url": "http://www.vcu.edu/", "institution_city": "Richmond", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.549255", "institution_longitude": "-77.45341" }, "enriched_sample": true, "discovery_notes": "Found in a stagnant puddle outside of the residence indicated by the GPS coordinates. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "C", "temperate": false }, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "0.5 mm, clear plaques\r\n", "lysogeny_notes": "does not form lysogen", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "VCU", "facility_name": "Virginia Commonwealth University Nucleic Acids Research Facilities", "contact_person": "", "shipping_address": "", "facility_website": "http://www.narf.vcu.edu/" }, "seq_method": { "short_name": "IONTORRENT", "method_name": "Ion Torrent" }, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kali_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Kali_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kali_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kali_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kali_EMPic_Thumb.jpeg", "dnam_file": null, "date_added": "2012-11-15T13:16:51-05:00", "date_modified": "2020-07-30T19:19:34-04:00" }, { "phage_name": "Kalica", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is derived from the combination of our two first names, Kaleigh and Monica.", "finder_name": "Kaleigh and Monica", "found_city": "Cleveland", "found_state": "MN", "found_country": "USA", "found_GPS_lat": "44.324397 N", "found_GPS_long": "93.8332 E", "found_year": 2016, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": null, "discovery_notes": "The soil is from a backyard in Cleveland MN, collected on 9/11/16 at 5:00 p.m. The soil was hard and wet and also had rocks in it. It was a sunny and windy 79 degree day. The soil was difficult to dig up but the spot it was located was easy to access. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques were small and clear throughout with no halos.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kalica_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kalica_EMPic.html", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kalica_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-21T14:04:14-05:00", "date_modified": "2020-09-17T14:07:26-04:00" }, { "phage_name": "Kalikimaka", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Josephine Vargas", "found_city": "Holtsville", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "40.798916 N", "found_GPS_long": "73.034322 W", "found_year": 2010, "p_institution": { "institution_code": "BUCK", "institution_name": "Bucknell University", "institution_logo": "https://phagesdb.org/media/institutions/Bucknell.jpg", "institution_url": "http://www.bucknell.edu/", "institution_city": "Lewisburg", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.955364", "institution_longitude": "-76.88495" }, "enriched_sample": true, "discovery_notes": "Compost soil sample taken at a depth of 15 cm. Air temperature surrounding soil was 20 degrees Celsius.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "Haloed, 4mm diameter after 48 hr incubation period at 37 degrees Celsius.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kalikimaka_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kalikimaka_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kalikimaka_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kalikimaka_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-12-20T07:05:35-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Kalimba", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Name is courtesy of Adeline.", "finder_name": "Noelle McDonald", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.444383 N", "found_GPS_long": "79.957995 W", "found_year": 2024, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Found in mulch and dried pollen.\r\nPlate picture is after one day incubation.\r\nAnnotated by Deborah Jacobs-Sera.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "AZ", "temperate": true }, "psubcluster": { "subcluster": "AZ5" }, "morphotype": "", "plaque_notes": "Messy halos", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-08-14", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 6080, "finishing_reactions": 0, "genome_length": 40040, "gcpercent": "70.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CGAAACGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 62, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kalimba_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2025-01-08T00:16:44-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kalimba.gbf", "qced_genbank_file_date": "2025-01-08T00:16:44-05:00", "isolation_host": { "genus": "Curtobacterium", "species": "flaccumfaciens", "strain_name": "NRRL B-729 SEA", "strain_species": { "id": 97, "genus": "Curtobacterium", "species_name": "flaccumfaciens", "species_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 97, "genus": "Curtobacterium", "species_name": "flaccumfaciens", "species_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 17, "genus_domain": "Bacteria", "genus_name": "Curtobacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PQ868973", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kalimba_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kalimba.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kalimba_1.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2024-05-20T07:17:27-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kalister", "old_names": "Gordi", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Paige Thurnbeck", "found_city": "Duluth", "found_state": "MN", "found_country": "United States", "found_GPS_lat": "46.817 N", "found_GPS_long": "92.1021 W", "found_year": 2019, "p_institution": { "institution_code": "CSSC", "institution_name": "College of St. Scholastica", "institution_logo": "https://phagesdb.org/media/institutions/CSSlogo14.jpg", "institution_url": "http://www.css.edu/", "institution_city": "Duluth", "institution_state": "MN", "institution_country": "USA", "institution_latitude": "46.818302", "institution_longitude": "-92.10086" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques were clear and about 1mm in diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "CAG3", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isoniazid-resistant mutant of G terrae 3612" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kalister_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kalister_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kalister_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-12-12T13:27:24-05:00", "date_modified": "2020-09-17T14:11:20-04:00" }, { "phage_name": "Kalita", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for our phage is an equal amount of our names put together. We chose this name because we all had an important part in fiding our phage.", "finder_name": "Kayla Brink, Kayla Overstreet, and Bernita Claxton", "found_city": "Lodi", "found_state": "CA", "found_country": "United States", "found_GPS_lat": "38.143853 N", "found_GPS_long": "0.0 W", "found_year": 2019, "p_institution": { "institution_code": "VAWE", "institution_name": "Virginia Western Community College", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaWesternCommunityCollege.png", "institution_url": "http://www.virginiawestern.edu/", "institution_city": "W. Roanoke", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.246257", "institution_longitude": "-79.97377" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-11T18:44:21-05:00", "date_modified": "2020-09-17T14:11:17-04:00" }, { "phage_name": "Kalizoi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Nicole Thea Kalinowski", "found_city": "Hopewell Jct", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "41.510556 N", "found_GPS_long": "74.045 W", "found_year": 2022, "p_institution": { "institution_code": "MSMC", "institution_name": "Mount Saint Mary College", "institution_logo": "https://phagesdb.org/media/institutions/MountSaintMaryCollege.JPG", "institution_url": "http://www.msmc.edu/", "institution_city": "Newburgh", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.512859", "institution_longitude": "-74.01247" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "AK", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2023-01-10", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 2977, "finishing_reactions": 0, "genome_length": 43518, "gcpercent": "61.0", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 13, "overhang_sequence": "GGTAACCGTGATA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 62, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kalizoi_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2024-07-25T16:14:05-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kalizoi_flat.txt", "qced_genbank_file_date": "2024-07-25T16:14:05-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PQ184829", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kalizoi.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-06-29T11:34:21-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kall", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kall", "finder_name": "Yutanee Ryan and Cameron Crawford", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.6677 N", "found_GPS_long": "117.4036 W", "found_year": 2018, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Grown at 22 degrees Celsius\r\nDiscovered from tree moss, at around 2 degrees Celsius", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Our morphologies were 1mm in diameter and circular\r\nThe plaques were clear and circular", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kall_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kall_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2018-05-02T07:35:44-04:00", "date_modified": "2020-09-17T14:10:48-04:00" }, { "phage_name": "Kallari", "old_names": "Booph", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Michelle Holland", "found_city": "La Jolla", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "32.87 N", "found_GPS_long": "117.24 W", "found_year": 2016, "p_institution": { "institution_code": "UCSD", "institution_name": "University of California, San Diego", "institution_logo": "https://phagesdb.org/media/institutions/UCSD.png", "institution_url": "http://www.ucsd.edu/", "institution_city": "San Diego", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "32.880335", "institution_longitude": "-117.2340" }, "enriched_sample": true, "discovery_notes": "soil location: right outside of York Hall, leafy, mostly dry, next to a tree\r\n\r\n30 degree Celsius isolation\r\n\r\nfinal titer: 1.4*10^-9 pfu/mL", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Average capsid length: 66.509nm\r\nAverage capsid width: 63.769nm\r\nAverage capsid diagonal: 72.163nm\r\nAverage tail length: 236.634nm\r\n\r\nclear lytic plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "platensis", "strain_name": "MJ1A1", "strain_species": { "id": 41, "genus": "Streptomyces", "species_name": "platensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 41, "genus": "Streptomyces", "species_name": "platensis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-04-04T18:01:58-04:00", "date_modified": "2017-04-04T18:02:22-04:00" }, { "phage_name": "Kallen", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Karissa Wilczak", "found_city": "Rock Hill", "found_state": "SC", "found_country": "United States", "found_GPS_lat": "34.937385 N", "found_GPS_long": "81.030661 W", "found_year": 2022, "p_institution": { "institution_code": "WNTH", "institution_name": "Winthrop University", "institution_logo": "https://phagesdb.org/media/institutions/WinthropUniversity.jpg", "institution_url": "http://www.winthrop.edu/", "institution_city": "Rock Hill", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "34.939523", "institution_longitude": "-81.03154" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kallen_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kallen_Plaque_Thumb.jpg.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2022-10-19T09:24:34-04:00", "date_modified": "2024-02-25T15:27:54-05:00" }, { "phage_name": "KalleTheDream", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of my phage came from a part of my name and then me having a dream about my phage coming alive.", "finder_name": "Kalleen Park", "found_city": "Plattsburgh", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "44.69 N", "found_GPS_long": "73.46 W", "found_year": 2025, "p_institution": { "institution_code": "SNYP", "institution_name": "State University of New York-Plattsburgh", "institution_logo": "https://phagesdb.org/media/institutions/PlattsburghSeal.png", "institution_url": "", "institution_city": "Plattsburgh", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "My soil sample was collected from a grassy area located right in front of Macdonough Hall in Plattsburgh, NY. The sample was taken from about 3cm below the ground and it was a bit cold and hard because of snow and low temperatures.", "isolation_temperature": 14, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Viewing my plates they were mainly blown out with phage and from time to time will look a bit foggy.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-04-23T12:36:56-04:00", "date_modified": "2025-07-11T12:34:16-04:00" }, { "phage_name": "Kalliden", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Meaning in Greek is place of beautiful trees, where the phage was obtained was in an astonishing little area just off of the Payette River.", "finder_name": "Blake Franklin", "found_city": "Banks", "found_state": "ID", "found_country": "USA", "found_GPS_lat": "44.05733 N", "found_GPS_long": "116.180339 W", "found_year": 2013, "p_institution": { "institution_code": "CIDA", "institution_name": "College of Idaho", "institution_logo": "https://phagesdb.org/media/institutions/the-college-of-idaho.gif", "institution_url": "http://www.collegeofidaho.edu/", "institution_city": "Caldwell", "institution_state": "ID", "institution_country": "USA", "institution_latitude": "43.653834", "institution_longitude": "-116.6768" }, "enriched_sample": null, "discovery_notes": "Slope facing west towards the Payette River. Not commonly traveled area, near Payette River, just off an old cement pathway, fairly rocky soil in an area surrounded by trees.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-10-18T11:00:54-04:00", "date_modified": "2020-09-17T14:05:35-04:00" }, { "phage_name": "Kalloor518", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kalloor is Kezia's family name. Since this phage came from our fifth soil sample, we decided to add the 5 in the name. The 18 came from the year we found it in, which is 2018.", "finder_name": "Kezia Happy, Solomon Siniard", "found_city": "Longview", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "32.46539 N", "found_GPS_long": "94.72402 W", "found_year": 2018, "p_institution": { "institution_code": "LETO", "institution_name": "LeTourneau University", "institution_logo": "https://phagesdb.org/media/institutions/LeTourneau.png", "institution_url": "http://www.letu.edu/", "institution_city": "Longview", "institution_state": "TX", "institution_country": "United States", "institution_latitude": "32.466083", "institution_longitude": "-94.72640" }, "enriched_sample": true, "discovery_notes": "Our soil sample was taken from an area with a few bushes around. The soil was a very dark brown color. The soil was slightly exposed. There were a few ants and silverfish in the soil. The hole we dug was 1.5\" deep. The ambient temperature was 18.9 C.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kalloor518_EMPic.JPG", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kalloor518_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-11-04T12:00:54-05:00", "date_modified": "2020-09-17T14:10:15-04:00" }, { "phage_name": "Kallystarr", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after me.", "finder_name": "Kallysta Ballweber", "found_city": "Riverside", "found_state": "CA", "found_country": "United States", "found_GPS_lat": "33.9125 N", "found_GPS_long": "117.501111 W", "found_year": 2025, "p_institution": { "institution_code": "LASI", "institution_name": "La Sierra University", "institution_logo": "https://phagesdb.org/media/institutions/LaSierra_Deah4d4.jpg", "institution_url": "https://lasierra.edu/", "institution_city": "Riverside", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "33.912017", "institution_longitude": "-117.4995" }, "enriched_sample": false, "discovery_notes": "Damp soil full of gritty, organic matter was collected ~ 4 inches below the surface", "isolation_temperature": 16, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques are small and clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kallystarr_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kallystarr_EMPic_zWeVtDT.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kallystarr_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Adobe_Express_-_file_1.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Adobe_Express_-_file.jpg", "dnam_file": null, "date_added": "2025-06-03T04:40:47-04:00", "date_modified": "2025-07-11T12:34:17-04:00" }, { "phage_name": "Kalnoky", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage was named after the musician Tomas Kalnoky.", "finder_name": "Alexander Stewart", "found_city": "Bowling Green", "found_state": "KY", "found_country": "USA", "found_GPS_lat": "36.985601 N", "found_GPS_long": "86.456021 W", "found_year": 2017, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "Sample was taken from a patch of exposed soil right after moderate rainfall. The area from which the sample was taken was surrounded by concrete on all sides. ", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A3" }, "morphotype": "SIPHO", "plaque_notes": "Plaques were turbid and had an average diameter of around 3mm.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-04-13", "seq_facility": null, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 296, "finishing_reactions": 0, "genome_length": 50571, "gcpercent": "64.0", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGGTGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 89, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kalnoky_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-05-30T16:17:12-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kalnoky_flat.txt", "qced_genbank_file_date": "2018-05-30T16:17:12-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH450119", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kalnoky_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kalnoky_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Kalnoky_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kalnoky.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kalnoky_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kalnoky_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-09-20T13:10:27-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kalo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Foster Kusz and Caley Gleason", "found_city": "Albion", "found_state": "MI", "found_country": "USA", "found_GPS_lat": "42.245551 N", "found_GPS_long": "84.742693 W", "found_year": 2017, "p_institution": { "institution_code": "ALBI", "institution_name": "Albion College", "institution_logo": "https://phagesdb.org/media/institutions/albion_college2.png", "institution_url": "http://www.albion.edu/", "institution_city": "Albion", "institution_state": "MI", "institution_country": "USA", "institution_latitude": "42.243705", "institution_longitude": "-84.74489" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-12T16:56:29-05:00", "date_modified": "2020-09-17T14:08:10-04:00" }, { "phage_name": "Kalonda", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kalonda is derived from my last name. I go by my last name which I share with all my siblings. It is unique and very special to me. Since the phage is also special, I would not want to call it anything else.", "finder_name": "Kapinga, Kalonda", "found_city": "Denton", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "33.21553 N", "found_GPS_long": "97.132446 W", "found_year": 2020, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "Kalonda was discovered from a soil sample named Masikeli. It came from a rich loam soil right next to a willow tree. The soil was dark and combined with sand,clay, and organic materials. The sample was collected right after heavy rain poured. After enriching and directly plating, There were clear plaques . Very spaced out and smooth.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "sanglieri", "strain_name": "UNT16F27A", "strain_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 73, "genus": "Streptomyces", "species_name": "sanglieri", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kalonda_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kalonda_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2020-04-05T18:33:46-04:00", "date_modified": "2021-01-28T11:04:07-05:00" }, { "phage_name": "Kalpha", "old_names": "Aphlak", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "The process of naming was an adventurous but\r\nsuccessful. Initiallv we chose the name GreaseLitnin on a whim after thinking we had less time to think of a name than we thought. However, after realizing we had more time, we had the idea to take our initials and make a word out of them. After many hours looking for words of inspiration, we choose the insurance company Aflac ducks name, Aflac, ad re-speller it using our initials: A.A,L.H,P.K.", "finder_name": "A.Amanullah, P.Kehler, L.Harrington", "found_city": "Oakland", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.446667 N", "found_GPS_long": "79.954167 W", "found_year": 2023, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Soil Sample was obtain from the entrance to UPitt's\r\nLangley Fallin a so sample. so was collected arter\r\na rainy day. thus it was slightly muddy and looked dark.\r\n\r\nThe other members that discovered this phage include: Akelia Lobban, Megan Thomas, Sachin\r\nSrinivasa", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque morphology has both large (-2mm\r\ndiameter, as well as small -less than imm diameter) plaques. Both plaque sizes are clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-04-17T13:59:16-04:00", "date_modified": "2023-04-17T13:59:40-04:00" }, { "phage_name": "Kalpine", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "The name \"Kalpine\" because \"Kal\"comes from my name Kalindi. And \"pine\" comes from a world heritage site the Drakenberg mountain at Alpine Heath Resort as my holiday destination. ", "finder_name": "Kalindi Persadh", "found_city": "Drakensberg", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "27.833333 S", "found_GPS_long": "29.683333 E", "found_year": 2015, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "It was found in Drakensberg at Alpine Heath Resort. \r\nThe soil sample was taken from near chalet 100.\r\nThe sample was moist, brownish/red.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A2" }, "morphotype": "SIPHO", "plaque_notes": "The plaques appeared turbid. \r\nIt was relatively round with halos. The size of the phage head was 80.08nm and its was tail 130.22nm.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-01-26", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 609, "finishing_reactions": 0, "genome_length": 53330, "gcpercent": "64.4", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTCGGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 96, "num_tRNAs": 2, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KX641263", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kalpine_Plaque_jjikZmN.JPG", "em_file": "https://phagesdb.org/media/emPics/Kalpine_EMPic_wJlWDuQ.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kalpine.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kalpine_Plaque_Thumbnail.JPG", "em_thumb_file": "https://phagesdb.org/media/emPics/Kalpine_EMPic_Thumbnail.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Kalpine.dnam5", "date_added": "2015-07-07T06:37:49-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kaluwa", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Name of my pet.", "finder_name": "Wathsala Athukorala", "found_city": "Plano", "found_state": "TX", "found_country": "United States", "found_GPS_lat": "33.058562 N", "found_GPS_long": "96.677484 W", "found_year": 2023, "p_institution": { "institution_code": "CLNC", "institution_name": "Collin College", "institution_logo": "https://phagesdb.org/media/institutions/CollinCollege_QGpldZv.jpg", "institution_url": "http://www.collin.edu/", "institution_city": "Plano", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.218037", "institution_longitude": "-96.64176" }, "enriched_sample": false, "discovery_notes": "Near the river bank in Oak Point Park. The soil type is clay and has less organic matter.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-04-26T15:13:56-04:00", "date_modified": "2023-04-26T15:13:56-04:00" }, { "phage_name": "Kaluza", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Amanda Byrd", "found_city": "", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2013, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-09-18T11:23:10-04:00", "date_modified": "2020-09-17T14:05:44-04:00" }, { "phage_name": "Kamaji", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named it after a character from Spirited Away who has six arms, resembling the six-legged structure of a bacteriophage.", "finder_name": "Lin Myat, Diane Scheiderer", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.255465 N", "found_GPS_long": "76.711868 W", "found_year": 2023, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "Soil was under mulch. It was quite damp, as sample was collected after light rain.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "mirabilis", "strain_name": "NRRL B-2400", "strain_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kamaji_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kamaji_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kamaji_Digest_58m3QHJ.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kamaji_Plaque_hk0qUc0.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/S3G5_01-thumb.png", "dnam_file": null, "date_added": "2023-10-02T09:01:07-04:00", "date_modified": "2024-02-25T15:28:16-05:00" }, { "phage_name": "Kamara", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kamesha Walker, Mayuri Brown, Raven Jackson", "found_city": "Atlanta", "found_state": "GA", "found_country": "USA", "found_GPS_lat": "33.733465 N", "found_GPS_long": "84.4001 W", "found_year": 2009, "p_institution": { "institution_code": "SPEL", "institution_name": "Spelman College", "institution_logo": "https://phagesdb.org/media/institutions/Spelman.gif", "institution_url": "http://www.spelman.edu/", "institution_city": "Atlanta", "institution_state": "GA", "institution_country": "USA", "institution_latitude": "33.745254", "institution_longitude": "-84.41397" }, "enriched_sample": true, "discovery_notes": "Located at Spelman College campus behind Abbey hall, moist soil. Soil depth 1in. Temperature 72 degrees.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kamara_Phages.jpg", "em_file": "https://phagesdb.org/media/emPics/Kamara_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kamara_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kamara_Phages_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kamara_EMPic_Thumbs.jpg", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Kamaru", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Rudra Kamat", "found_city": "Columbus", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "40.001 N", "found_GPS_long": "83.024139 W", "found_year": 2021, "p_institution": { "institution_code": "TOSU", "institution_name": "The Ohio State University", "institution_logo": "https://phagesdb.org/media/institutions/ohiostate_logo.jpg", "institution_url": "http://www.osu.edu/", "institution_city": "Columbus", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "40.014457", "institution_longitude": "-83.03091" }, "enriched_sample": false, "discovery_notes": "Sample taken near Olentangy River", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "DN", "temperate": true }, "psubcluster": { "subcluster": "DN1" }, "morphotype": "", "plaque_notes": "Clear plaques", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2022-01-18", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1541, "finishing_reactions": 0, "genome_length": 52694, "gcpercent": "63.1", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CTCGGGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 97, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kamaru_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2024-05-04T22:13:42-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kamaru_flat.txt", "qced_genbank_file_date": "2024-05-04T22:13:42-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PP978784", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kamaru.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-12-16T12:41:54-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kamashten", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ashten Nair and Kamda Miralieva", "found_city": "Columbus", "found_state": "OH", "found_country": "USA", "found_GPS_lat": "40.003044 N", "found_GPS_long": "83.027215 W", "found_year": 2023, "p_institution": { "institution_code": "TOSU", "institution_name": "The Ohio State University", "institution_logo": "https://phagesdb.org/media/institutions/ohiostate_logo.jpg", "institution_url": "http://www.osu.edu/", "institution_city": "Columbus", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "40.014457", "institution_longitude": "-83.03091" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "DE", "temperate": false }, "psubcluster": { "subcluster": "DE1" }, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2023-07-19", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 559, "finishing_reactions": 0, "genome_length": 59294, "gcpercent": "67.4", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 86, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kamashten_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2025-05-02T22:28:06-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kamashten_flat.txt", "qced_genbank_file_date": "2025-05-02T22:28:06-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PV915807", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kamashten.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-05-15T08:06:34-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "KamaSim", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "KamaSim was named after my family because they are the most important aspect of my life, and it can be described in two parts. The first part, Kama, includes the first initials of all of my direct family members, so I chose \"K\" for myself, the first \"a\" for my dad, \"m\" for my mom, and the last \"a\" for my brother. 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"Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-03-15T08:38:09-04:00", "date_modified": "2020-09-17T14:10:41-04:00" }, { "phage_name": "Kamehameha", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Vincent Duong", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2012, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Round, Clear, Small Plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-05-04T12:16:13-04:00", "date_modified": "2020-09-17T14:05:57-04:00" }, { "phage_name": "Kamella", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A combination of our names: Kamiah and Bella.", "finder_name": "Kamiah Wines and Isabella Willis", "found_city": "West Monroe", "found_state": "LA", "found_country": "USA", "found_GPS_lat": "32.51444 N", "found_GPS_long": "92.18361 W", "found_year": 2018, "p_institution": { "institution_code": "ULOM", "institution_name": "University of Louisiana at Monroe", "institution_logo": "https://phagesdb.org/media/institutions/ULM_logo.jpg", "institution_url": "http://www.ulm.edu/", "institution_city": "Monroe", "institution_state": "LA", "institution_country": "USA", "institution_latitude": "32.528941", "institution_longitude": "-92.07241" }, "enriched_sample": true, "discovery_notes": "By a pond that had a bench where dogs like to pee.\r\nThe soil was dry and loosely packed.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "They were small and clear. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-24T09:52:21-04:00", "date_modified": "2020-09-17T14:09:53-04:00" }, { "phage_name": "Kamena", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after a character from one of my favorite shows.", "finder_name": "Saad Areeb, Kareem Dajani", "found_city": "Fairfax", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "38.88353 N", "found_GPS_long": "77.38622 W", "found_year": 2024, "p_institution": { "institution_code": "GEMA", "institution_name": "George Mason University", "institution_logo": "https://phagesdb.org/media/institutions/GeorgeMason_YjNctcY.jpg", "institution_url": "https://www.gmu.edu/", "institution_city": "Fairfax", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Soil was thoroughly enriched, sample collected after rainfall. The sample was taken at 08:30 hours, 1 inch below topsoil. The humidity was at 91% with the dew point at 16.7 degrees celsius.", "isolation_temperature": 17, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plated plaques were mostly round, shaped like even circles. Depending on the dilution series or purification level, there were more plaques the less purified the sample was.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "SN2", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kamena_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Kamena_EMPic.jpeg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-15T10:16:37-05:00", "date_modified": "2025-04-04T11:37:42-04:00" }, { "phage_name": "Kami", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Claire Gillette and Yogitha Pazhani", "found_city": "Boulder", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "40.006667 N", "found_GPS_long": "105.261733 W", "found_year": 2010, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "Base of tree outside Carlson Gym\r\nNo significant foot traffic; near roots; shady area ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "-2-3 mm\r\n-plaques are clear with cloudyness on outside \r\n-incubated for 48 hours at 37°C", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kami_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kami_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kami_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kami_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kami_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-12-13T10:23:04-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Kamikaze", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kamikaze translates to \"Divine Wind\". In the begingings of our purifications, our professor made a comment of how destructive the phage were. We knew this name would fit because it juxtaposes the destructive nature of the phage with the beauty of discovery and innovation.", "finder_name": "Sabrina SIlva & Naseem Ahmadi", "found_city": "Owings Mill", "found_state": "MD", "found_country": "Unites States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2019, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": false, "discovery_notes": "collected at a garden; temperature 85*F; humidity: 57%;", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "after 24 hours incubation at 37C, clear plaqus, about 0.1-0.2 cm in size, and round edges", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "mirabilis", "strain_name": "NRRL B-2400", "strain_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 71, "genus": "Streptomyces", "species_name": "mirabilis", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kamikaze_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kamikaze_EMPic.png", "dnam_file": null, "date_added": "2019-10-02T07:24:30-04:00", "date_modified": "2020-09-17T14:11:11-04:00" }, { "phage_name": "Kamikaze12", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Marcos Warnick, Nicole Guevara", "found_city": "El Paso", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2012, "p_institution": { "institution_code": "UTEP", "institution_name": "University of Texas at El Paso", "institution_logo": "https://phagesdb.org/media/institutions/UTEP.jpg", "institution_url": "http://www.utep.edu/", "institution_city": "El Paso", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "31.773367", "institution_longitude": "-106.5057" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "D", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-03-27T16:28:25-04:00", "date_modified": "2015-04-29T14:32:34-04:00" }, { "phage_name": "Kamisha", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Since I am the founder of the phage, I decided to name it Kamisha as a derivative from my name.", "finder_name": "Kami Tiemann", "found_city": "Corpus Christi", "found_state": "TX", "found_country": "United States of America", "found_GPS_lat": "27.66 N", "found_GPS_long": "97.34 W", "found_year": 2022, "p_institution": { "institution_code": "DLMR", "institution_name": "Del Mar College", "institution_logo": "https://phagesdb.org/media/institutions/DelMarLogo_.jpg", "institution_url": "http://www.delmar.edu/", "institution_city": "Corpus Christi", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "27.764369", "institution_longitude": "-97.40711" }, "enriched_sample": true, "discovery_notes": "I discovered this phage from the soil in my backyard. The area I retrieved it from was a patch in the grass where the dirt was open and exposed. The soil was damp, muddy-looking, and grey-brown in color.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "The phage plaques are roughly 2mm in diameter and seem to be primarily lytic in nature. They appear rounded, clear, and are aggressive in growth.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kamisha_Plaque.jfif", "em_file": "https://phagesdb.org/media/emPics/Kamisha_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kamisha_Digest.pptx", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-08-04T12:02:04-04:00", "date_modified": "2022-08-04T12:02:04-04:00" }, { "phage_name": "Kamiyu", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Ching-Chung Ko", "found_city": "State College", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.800223 N", "found_GPS_long": "77.863144 W", "found_year": 2009, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B3" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2011-09-20", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "454", "method_name": "454" }, "coverage": 10, "finishing_reactions": null, "genome_length": 68633, "gcpercent": "67.5", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 103, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "JN699018", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kamiyu.tif", "digest_file": null, "vdigest_file": "https://phagesdb.org/media/vDigestPics/Kikipoo_Restriction_Map_.jpg", "fasta_file": "https://phagesdb.org/media/fastas/Kamiyu.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kamiyu_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Kamiyu.dnam5", "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kamlar", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "K. Meyer, L. Reisch", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.666884 N", "found_GPS_long": "117.404744 E", "found_year": 2017, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-10-23T11:40:57-04:00", "date_modified": "2020-09-17T14:09:02-04:00" }, { "phage_name": "Kamlex", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kamali Dini Adewale ", "found_city": "Dallas", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "32.907106 N", "found_GPS_long": "96.731624 W", "found_year": 2014, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "Discovered during the UNT-HHMI Summer Transitions Workshop", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "venezuelae", "strain_name": "ATCC 10712", "strain_species": { "id": 5, "genus": "Streptomyces", "species_name": "venezuelae", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10712", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 5, "genus": "Streptomyces", "species_name": "venezuelae", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-11-20T11:16:48-05:00", "date_modified": "2020-09-17T14:07:20-04:00" }, { "phage_name": "Kammatt", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is a combination of both researchers names for this project.", "finder_name": "Matthew Reed & Kamrin Sorensen", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.666003 N", "found_GPS_long": "117.404344 W", "found_year": 2013, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": false, "discovery_notes": "Received our enrichment culture from the Gonzaga University pond, about 1 inch deep within the pond. At time of removal it was 25 degrees celsius outside at 10:51 am. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Our plaques grew at 25 degrees celsius. Plaques were very turbid, indicating extremely temperate phage. Our plaques grew within a 3-4 day span. Plaques were approximately 0.5mm in diameter. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kammatt_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kammatt_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Kammatt_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kammatt_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kammatt_EMPic_Thumb.png", "dnam_file": null, "date_added": "2013-11-07T13:06:35-05:00", "date_modified": "2020-09-17T14:05:33-04:00" }, { "phage_name": "Kamni", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the students who discovered it.", "finder_name": "Kamryn Nathan and Dani Garcia Lopez", "found_city": "Charlotte", "found_state": "NC", "found_country": "USA", "found_GPS_lat": "35.16569 N", "found_GPS_long": "80.759107 W", "found_year": 2018, "p_institution": { "institution_code": "QUCH", "institution_name": "Queens University of Charlotte", "institution_logo": "https://phagesdb.org/media/institutions/QueensUniversityOfCharlotte.jpg", "institution_url": "http://www.queens.edu/", "institution_city": "Charlotte", "institution_state": "NC", "institution_country": "USA", "institution_latitude": "35.188490", "institution_longitude": "-80.83339" }, "enriched_sample": true, "discovery_notes": "Discovered in a chicken coop.", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small and clear", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-12-06T12:06:36-05:00", "date_modified": "2020-09-17T14:09:49-04:00" }, { "phage_name": "Kamnia", "old_names": "Tthree", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We chose Tthree because it was the name of our group that we used throughout the semester to label our plates, etc. ", "finder_name": "Camryn Flores, Shania Garcia, Kim Peeler", "found_city": "Robstown", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "27.85 N", "found_GPS_long": "97.66 W", "found_year": 2018, "p_institution": { "institution_code": "DLMR", "institution_name": "Del Mar College", "institution_logo": "https://phagesdb.org/media/institutions/DelMarLogo_.jpg", "institution_url": "http://www.delmar.edu/", "institution_city": "Corpus Christi", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "27.764369", "institution_longitude": "-97.40711" }, "enriched_sample": true, "discovery_notes": "Soil was found on the perimeter of a man-made pond in Robstown, Texas. ", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Our plagues that we had throughout the experiment were decent size, some were smaller than others. Also some were closer together than others. We had a couple of isolated ones that we used to pick from. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Tthree_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Tthree_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-12-06T07:55:07-05:00", "date_modified": "2020-09-17T14:09:54-04:00" }, { "phage_name": "Kampe", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "I chose to to name this phage Kampe because I was reading a book and this name was in it.", "finder_name": "Matthew (Monty) Montgomery", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.443889 N", "found_GPS_long": "79.9525 W", "found_year": 2015, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "Gardening soil found at this location. It was purified and extracted by Patrick Rimple.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "CX", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "Kampe's plaques are slightly turbid, just enough that I can't call them clear. They are all less than 5mm in size.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2015-10-27", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1517, "finishing_reactions": 0, "genome_length": 80649, "gcpercent": "47.0", "end_type": "TREP", "repeat_length": 249, "end_notes": "Read buildups flanking high coverage region.", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 115, "num_tRNAs": 1, "num_tmRNAs": 1, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KU998254", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kampe_EMPic.tiff", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kampe.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kampe_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/Kampe.dnam5", "date_added": "2015-07-07T17:56:10-04:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kampy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from the Greek word for curved, kampulos. My phage displayed a bent tail morphology under TEM, so the anglicized version of kampulos, Kampy, wound up being a good choice. ", "finder_name": "Andrew Halleran", "found_city": "Williamsburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "37.271111 N", "found_GPS_long": "76.713889 W", "found_year": 2012, "p_institution": { "institution_code": "CWAM", "institution_name": "College of William & Mary", "institution_logo": "https://phagesdb.org/media/institutions/william_and_mary-01.jpg", "institution_url": "http://www.wm.edu/", "institution_city": "Williamsburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "37.272588", "institution_longitude": "-76.71691" }, "enriched_sample": true, "discovery_notes": "Discovered in damp soil between 0-4cm in depth. ", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A4" }, "morphotype": "SIPHO", "plaque_notes": "After isolation Kampy consistently formed small (~1mm) clear plaques. ", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2013-01-11", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "IONTORRENT", "method_name": "Ion Torrent" }, "coverage": 1020, "finishing_reactions": 7, "genome_length": 51378, "gcpercent": "63.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGCCGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 88, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "KJ510414", "refseq_accession": "NC_024141", "plaque_file": "https://phagesdb.org/media/plaquePics/Kampy_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kampy_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kampy_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kampy.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kampy_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kampy_EMPic_Thumbs.jpg", "dnam_file": null, "date_added": "2012-11-28T16:23:01-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kamryn", "old_names": "Karmaa", "program": null, "naming_notes": "Overall, my class had bad luck finding phages this semester. Out of our small class of 10, only 3 phages were found within the almost 4 month period of searching. Therefore, since we had bad karma all along and this name is similar to my own, I chose to name my phage Karmaa.", "finder_name": "Karmen Jones", "found_city": "Memphis", "found_state": "TN", "found_country": "USA", "found_GPS_lat": "29.9639 N", "found_GPS_long": "90.1071 W", "found_year": 2017, "p_institution": { "institution_code": "XAVU", "institution_name": "Xavier University of Louisiana", "institution_logo": "https://phagesdb.org/media/institutions/Xavier-University-of-Louisiana.jpg", "institution_url": "http://www.xula.edu/", "institution_city": "New Orleans", "institution_state": "LA", "institution_country": "USA", "institution_latitude": "29.964843", "institution_longitude": "-90.10674" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "C", "temperate": false }, "psubcluster": { "subcluster": "C1" }, "morphotype": "MYO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2018-01-26", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 578, "finishing_reactions": 0, "genome_length": 156360, "gcpercent": "64.7", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 233, "num_tRNAs": 33, "num_tmRNAs": 1, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kamryn_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-12-30T23:31:44-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kamryn.gbf", "qced_genbank_file_date": "2018-12-30T23:31:44-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK359329", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kamryn.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Kamryn.dnam5", "date_added": "2017-12-02T14:36:38-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kamtron", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage Kamtron because my initials are kam and then I thought adding \"tron\" behind it would make it sound cool.", "finder_name": "Katie Miller", "found_city": "Cumberland", "found_state": "MD", "found_country": "Allegany County", "found_GPS_lat": "39.644339 N", "found_GPS_long": "78.714067 W", "found_year": 2021, "p_institution": { "institution_code": "ALGY", "institution_name": "Allegany College of Maryland", "institution_logo": "https://phagesdb.org/media/institutions/allegany2.jpg", "institution_url": "", "institution_city": "Cumberland", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Soil sample was collected by Cara Trembly a student at Allegany College of Maryland.", "isolation_temperature": 27, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Kamtron creates plaques that have smooth boarders and that average 4mm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kamtron_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Kamtron_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kamtron_Plaque.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kamtron_EMPic_UHAcLQQ.jpg", "dnam_file": null, "date_added": "2021-10-20T14:46:27-04:00", "date_modified": "2023-11-20T21:50:03-05:00" }, { "phage_name": "Kamu", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Alanna Unruh and Kaylee Moniz", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.666008 N", "found_GPS_long": "117.404062 W", "found_year": 2016, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We discovered our phage through a soil sample taken near Lake Arthur on Gonzaga University's campus. The soil itself was somewhat wet and dark in color indicating moisture that could have been transferred over from the lake. We decided to take our sample from this spot since other groups had success with their soil samples and we figured the likelihood of finding a phage in a soil sample near a lake would be higher than elsewhere. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Our plaques were approximately 1 to 2 mm in size. They were uniform and similar in shape with being symmetric and round. They were all temperate. \r\nAfter receiving our TEM images, the images showed that the capsids were symmetric and round, with an approximate size of 58.33 nm or 0.7 cm. Our tail measured at 300 nm or 3.6 cm in length. The total length of our phage was 366.66 nm or 4.4 cm. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KaMu_Plaque_36QwHiA.JPG", "em_file": "https://phagesdb.org/media/emPics/KaMu_EMPic_3Kr1obO.png", "digest_file": "https://phagesdb.org/media/digestPics/KaMu_Digest_v7xQ5zQ.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KaMu_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KaMu_EMPic_Thumb.png", "dnam_file": null, "date_added": "2016-12-01T22:46:44-05:00", "date_modified": "2020-09-17T14:07:37-04:00" }, { "phage_name": "Kamya", "old_names": "Kamya Menon", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My name is Kamya Menon. I thought naming the phage after my first name would be unique and practical since I am the student conducting the experiments on this phage.", "finder_name": "Kamya Menon", "found_city": "SEWICKLEY", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.4 N", "found_GPS_long": "79.9 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Soil collected from a flower bed at Litchfield Towers in Pittsburgh, PA. This soil sample is collected from a cool surrounding environment. However, the soil is very moist due to the rain the day before. Also the environment is a flower bed filled with vegetation.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques created by this phage are roughly .7 mm in size. Phage Kamya appears to be a member of the siphoviridae class, having a long, flexible, non-contractile tail, and an isometric capsid. \r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kamya_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kamya_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kamya_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kamya_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kamya_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-10-09T08:09:50-04:00", "date_modified": "2020-09-17T14:08:36-04:00" }, { "phage_name": "Kana", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We chose our name from the first letter of our first names arranged in an order that was pronouneable.", "finder_name": "K Lin, A Shirley, N Pacheco, A Ferrimy", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.38512 N", "found_GPS_long": "72.520838 W", "found_year": 2024, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "It was found in a backyard with a variety of trees and bushes nearby.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are clear but look like they have a halo with defined edges. A mixture of small and large plaques initially. Average size of approximately 1mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/kana_plaque_thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/kana_empic_thumb.jpg", "dnam_file": null, "date_added": "2024-03-28T11:47:23-04:00", "date_modified": "2025-04-04T11:37:38-04:00" }, { "phage_name": "Kaname", "old_names": "Madoka", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "named after Madoka Kaname, a character from \"Puella Magi Madoka Magica\". The name was originally \"Madoka\", though I was unsure if that was copyrighted.", "finder_name": "Kaitlin Rodewald", "found_city": "River Falls", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": null, "discovery_notes": "The phage came from another student's sample. Their claim was that they got their sample from their garden at home next to the tomato plants, but they gave no further details.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Originally big, clear, and small in number. Gradually became smaller and more turbid as the population increased. Presence of halo unknown.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kaname_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kaname_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kaname_Digest.JPG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kaname_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kaname_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-11-23T14:43:08-05:00", "date_modified": "2020-09-17T14:06:37-04:00" }, { "phage_name": "Kanata", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Soil sample was taken from Kanata", "finder_name": "Lauren Wilkes", "found_city": "Ottawa", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.380081 N", "found_GPS_long": "75.950322 W", "found_year": 2022, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Soil sample taken just off my front doorstep from underneath a hosta plant", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small-medium clear plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "NRRL B-2880", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kanata_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kanata_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2022-12-05T08:40:08-05:00", "date_modified": "2025-07-30T16:38:55-04:00" }, { "phage_name": "Kanati", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "cherokee mythology", "finder_name": "mathew and joey", "found_city": "north andover", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2014, "p_institution": { "institution_code": "MERI", "institution_name": "Merrimack College", "institution_logo": "https://phagesdb.org/media/institutions/14169_mc_centered_rgb.png", "institution_url": "http://www.merrimack.edu/", "institution_city": "North Andover", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.667953", "institution_longitude": "-71.12257" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "medium size\r\nclear\r\ntubid", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kanati_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kanati_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kanati_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kanati_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-11-03T09:59:30-05:00", "date_modified": "2020-09-17T14:06:03-04:00" }, { "phage_name": "KandZ", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The first letter of both of our names ", "finder_name": "Zachary Ladd & Kendra Freund", "found_city": "Fort Kent ", "found_state": "ME", "found_country": "USA", "found_GPS_lat": "47.0 N", "found_GPS_long": "68.0 W", "found_year": 2015, "p_institution": { "institution_code": "UMFK", "institution_name": "University of Maine, Fort Kent", "institution_logo": "https://phagesdb.org/media/institutions/umfk.jpg", "institution_url": "http://www.umfk.maine.edu/", "institution_city": "Fort Kent", "institution_state": "ME", "institution_country": "USA", "institution_latitude": "47.249851", "institution_longitude": "-68.59010" }, "enriched_sample": true, "discovery_notes": "Was from a donor plate", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "D", "temperate": false }, "psubcluster": { "subcluster": "D1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-02-16", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1479, "finishing_reactions": 0, "genome_length": 64596, "gcpercent": "59.7", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 86, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KandZ_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-09-01T22:30:30-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KandZ.gbf", "qced_genbank_file_date": "2018-09-01T22:30:30-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH834615", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KandZ.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/KandZ.dnam5", "date_added": "2015-11-16T17:02:32-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "KaneaKasaum", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is the rearrangement of letters of countries that I have lived in and my initials.", "finder_name": "Ayo Momoh, Kendall Dollard, Riddhi Bombaywala", "found_city": "Albany", "found_state": "NY", "found_country": "United States of America", "found_GPS_lat": "42.647053 N", "found_GPS_long": "73.778969 W", "found_year": 2021, "p_institution": { "institution_code": "ACPS", "institution_name": "Albany College of Pharmacy and Health Sciences", "institution_logo": "https://phagesdb.org/media/institutions/apchsnav_logo.png", "institution_url": "https://www.acphs.edu/", "institution_city": "Albany", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "-soil was moist", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "-clear \r\n-plaque diameter: 0.0217mm\r\n-same size plaques\r\n-no contaminated plaques\r\n-approximately 99 plaque-forming units", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KaneaKasaum_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KaneaKasaum_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/KaneaKasaum_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-09T16:28:43-05:00", "date_modified": "2022-03-16T11:01:59-04:00" }, { "phage_name": "Kanely", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kanely was derived from a 3 person group (Khayla, Natasha and Lizzy).", "finder_name": "Khayla Easely", "found_city": "Champlain", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "38.010007 N", "found_GPS_long": "77.004354 W", "found_year": 2016, "p_institution": { "institution_code": "VAUU", "institution_name": "Virginia Union University", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaUnion.jpg", "institution_url": "http://www.vuu.edu/", "institution_city": "Richmond", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "This sample was extracted near a boating dock close to the Potomac River. This was a soil sample, from flowerbed, with a depth of ~4.5 inches. The ambient temperature was 80 degrees (F), sunny on September 3, 2016.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A1" }, "morphotype": "SIPHO", "plaque_notes": "The average plaque size is ~0.425 cm. There is a halo/turbidity effect, suggesting a lysogenic phenotype.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2017-01-03", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3518, "finishing_reactions": 0, "genome_length": 52539, "gcpercent": "63.5", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGATGGTAA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 93, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kanely_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2019-10-07T23:40:44-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kanely.gbf", "qced_genbank_file_date": "2019-10-07T23:40:44-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN585976", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kanely_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kanely.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kanely_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Kanely.dnam5", "date_added": "2016-12-02T21:40:26-05:00", "date_modified": "2025-09-13T06:41:38-04:00" }, { "phage_name": "Kanesga", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Because phage came from grass sample I named it Kanesga meaning grasshopper in cherokee", "finder_name": "Dana Robbins", "found_city": "Ames", "found_state": "IA", "found_country": "United States", "found_GPS_lat": "0.42 N", "found_GPS_long": "93.0 W", "found_year": 2023, "p_institution": { "institution_code": "IASU", "institution_name": "Iowa State University", "institution_logo": "https://phagesdb.org/media/institutions/IowaStateUniversity.png", "institution_url": "https://www.iastate.edu/", "institution_city": "Ames", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.026380", "institution_longitude": "-93.64653" }, "enriched_sample": false, "discovery_notes": "Was found under a tree after rain", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "MIGS", "facility_name": "Microbial Genome Sequencing Center", "contact_person": "", "shipping_address": "", "facility_website": "https://www.migscenter.com/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kanesga_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kanesga_EMPic.jpeg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-02T08:35:50-04:00", "date_modified": "2024-02-25T15:28:17-05:00" }, { "phage_name": "Kang", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Eric Kang", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.330833 N", "found_GPS_long": "76.619167 W", "found_year": 2013, "p_institution": { "institution_code": "JHOU", "institution_name": "Johns Hopkins University", "institution_logo": "https://phagesdb.org/media/institutions/johns_hopkins_university.png", "institution_url": "http://www.jhu.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.330171", "institution_longitude": "-76.62047" }, "enriched_sample": true, "discovery_notes": "Time and Date: 12:52 PM on September 4th\r\nTemp: 80 degrees F. \r\nDepth: 3 cm\r\nSoil Condition: packed and dry\r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Small isolated plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kang_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kang_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kang_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kang_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-01-16T10:27:31-05:00", "date_modified": "2020-09-17T14:05:58-04:00" }, { "phage_name": "Kanga", "old_names": "Getalong2", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A play on words from a different Rodney King. ", "finder_name": "Rodney King", "found_city": "", "found_state": "KY", "found_country": "", "found_GPS_lat": "36.93262 N", "found_GPS_long": "86.40674 E", "found_year": 2016, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "Isolated by enrichment from a compost pile", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Forms small (2-3mm) plaques with a clear center.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-12-07T16:01:44-05:00", "date_modified": "2020-09-17T14:07:25-04:00" }, { "phage_name": "Kangaroo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Everyone in our group loves Kangaroos!!", "finder_name": "K Chiu, I Truong, S Tran-Harrison, A Karol", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.389043 N", "found_GPS_long": "72.522594 W", "found_year": 2025, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "The sample was collected by a garden on campus. The land was relatively untouched by humans, and reserved for plants.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "We chose the only phage that formed on the plate. \r\nPhage size: 1 millimeter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-03-25T15:26:43-04:00", "date_modified": "2025-03-25T15:26:43-04:00" }, { "phage_name": "Kanhai", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kanhai Farrakhan", "found_city": "Washington DC", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2012, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-02-06T12:56:57-05:00", "date_modified": "2017-09-12T10:27:33-04:00" }, { "phage_name": "KANIA", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ken Inoue", "found_city": "Greenwich", "found_state": "CT", "found_country": "USA", "found_GPS_lat": "41.040025 N", "found_GPS_long": "73.61355 W", "found_year": 2011, "p_institution": { "institution_code": "BUCK", "institution_name": "Bucknell University", "institution_logo": "https://phagesdb.org/media/institutions/Bucknell.jpg", "institution_url": "http://www.bucknell.edu/", "institution_city": "Lewisburg", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.955364", "institution_longitude": "-76.88495" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Turbid Plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KANIA_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KANIA_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/KANIA_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KANIA_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KANIA_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-11-16T09:40:43-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Kanika97", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Kanika Sarma", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.507403 N", "found_GPS_long": "79.863694 W", "found_year": 2011, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2012-01-13T04:36:24-05:00", "date_modified": "2019-03-20T10:23:04-04:00" }, { "phage_name": "Kanishka1", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is from one of my friends. ", "finder_name": "Logan Greer", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "The sample was found near a tree, approximately 3 feet from the sidewalk. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques were very large, and the sample was not cloudy. It was very clear and easy to see. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-04-05T23:01:25-04:00", "date_modified": "2020-09-17T14:08:56-04:00" }, { "phage_name": "Kankanun", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "From a native dialect in the Philippines which translates to \"snack\".", "finder_name": "Aldrine Jade Pascua", "found_city": "Pullman", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "46.7552 N", "found_GPS_long": "117.1742 W", "found_year": 2019, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "Soil sample was dug 2 inches deep\r\nSomewhat grassy\r\nElevated soil \r\nMoist \r\nBehind an apartment house", "isolation_temperature": 14, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Phage wasn't found in the soil samples but according to the adopted phage, the morphology of the plaque were fairly small and covered the entire plate.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-10-29T21:49:24-04:00", "date_modified": "2019-10-29T21:49:24-04:00" }, { "phage_name": "KannH", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my daughter - Katherine Ann Harms.", "finder_name": "Bob Harms", "found_city": "St. Louis", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "38.5678 N", "found_GPS_long": "90.4225 W", "found_year": 2018, "p_institution": { 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No soil, just loose algae. 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"date_modified": "2025-08-28T15:04:21-04:00" }, { "phage_name": "Kanyaze", "old_names": "Kanyage", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kanye always inserts himself into other people's lives just like a bacteriophage does to a cell. 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The plaques also are a small to medium size. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-21T06:10:01-05:00", "date_modified": "2020-09-17T14:07:52-04:00" }, { "phage_name": "Kanye", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My first thought when I saw my phage was that it had a big head. 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"sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 140, "num_tRNAs": 2, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kanye_CompleteNotes_8f5YSy4.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kanye_Minimal_Final_MxK5mKO.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Kanye_Authors_ZCVXrEq.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Kanye_CoverSheet_Xrv95Cs.pdf", "submitted_annotation_date": "2019-08-30T17:17:17-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kanye_flat.txt", "qced_genbank_file_date": "2019-08-30T17:17:17-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MN428059", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kanye_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kanye_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kanye_Digest.jpg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kanye.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kanye_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kanye_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2014-12-04T09:11:15-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "KanyeEast", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the greatest singer and songwriter of our generation I originally was going to name it KanyeSouth as it is the state of his career but that was taken so I named it KanyeEast based on it was found on the east coast", "finder_name": "Jake Klardie", "found_city": "Hollis", "found_state": "NH", "found_country": "United States", "found_GPS_lat": "42.0 N", "found_GPS_long": "71.0 W", "found_year": 2023, "p_institution": { "institution_code": "UNHM", "institution_name": "University of New Hampshire at Manchester", "institution_logo": "https://phagesdb.org/media/institutions/unh_manchester.png", "institution_url": "", "institution_city": "Manchester", "institution_state": "NH", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found in rocky fine soil with organic matter", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Bullseye looking plaques around 1cm in diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-13T10:10:33-05:00", "date_modified": "2023-12-13T10:10:33-05:00" }, { "phage_name": "Kanyeezy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Colin Stooksberry", "found_city": "Evansville", "found_state": "IN", "found_country": "United States", "found_GPS_lat": "37.9731 N", "found_GPS_long": "87.5324 W", "found_year": 2023, "p_institution": { "institution_code": "UEVN", "institution_name": "University of Evansville", "institution_logo": "https://phagesdb.org/media/institutions/UniversityOfEvansville.jpg", "institution_url": "https://www.evansville.edu/", "institution_city": "Evansville", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "37.973242", "institution_longitude": "-87.53251" }, "enriched_sample": true, "discovery_notes": "Found next to a fire hydrant.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kanyeezy_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Kanyeezy_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Kanyeezy_Digest.pdf", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-12-01T15:40:51-05:00", "date_modified": "2024-02-25T15:28:19-05:00" }, { "phage_name": "KanyeFresh", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage after Kanye West.", "finder_name": "Caroline Steele", "found_city": "Blacksburg", "found_state": "VA", "found_country": "United States", "found_GPS_lat": "37.2266 N", "found_GPS_long": "80.4166 W", "found_year": 2019, "p_institution": { "institution_code": "VTEC", "institution_name": "Virginia Tech", "institution_logo": "https://phagesdb.org/media/institutions/VirginiaTech.png", "institution_url": "http://www.vt.edu/", "institution_city": "Blacksburg", "institution_state": "VA", "institution_country": "United States", "institution_latitude": "37.228453", "institution_longitude": "-80.42347" }, "enriched_sample": true, "discovery_notes": "Discovered from soil in my friend's yard. Lots of foot traffic, suburban area, across the street from large construction site.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques were translucent, but not clear. Many were pretty small plaques but very clustered.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-11T18:31:33-05:00", "date_modified": "2020-09-17T14:11:14-04:00" }, { "phage_name": "KanyeSouth", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Joseph \"Brad\" Segal", "found_city": "San Diego", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "32.8675 N", "found_GPS_long": "117.24298 W", "found_year": 2008, "p_institution": { "institution_code": "UCSD", "institution_name": "University of California, San Diego", "institution_logo": "https://phagesdb.org/media/institutions/UCSD.png", "institution_url": "http://www.ucsd.edu/", "institution_city": "San Diego", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "32.880335", "institution_longitude": "-117.2340" }, "enriched_sample": true, "discovery_notes": "Taken from soil one inch below surface approx 25°C, in an area of mostly shaded grass at the south end of Muir Field. Healthy grass is surrounding it, but large patch of dirt has no big stands of grass growing in it, just multiple tiny wasps of baby grass. Sample from slanted surface that faces South.", "isolation_temperature": null, "growth_notes": "Titer was increased due to UV exposure. 10 plates were exposed to short-wave UV radiation for two minutes each and then 8mL of phage buffer was immediately added to each plate. Plates were stored at 4°C for 22 hours before removing and filtering lysate. ", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Exact plaque morphology varies each time that plaque is plated, but for the most part the plaque will appear extremely turbid. The plaques will range from 1mm-2mm diameter. Plaques incubated from 24-48 hours at 37°C. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kanye_South_plaque_1.jpg", "em_file": "https://phagesdb.org/media/emPics/Kanye_South_EM.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kanye_South_plaque_thumb_1.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KanyeSouth_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2020-07-29T15:31:54-04:00" }, { "phage_name": "KanyeSouthwest", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of a popular celebrity, Kanye West, was used as the inspiration and the group modified his last name to \"Southwest\" after the residential area in the University of Massachusetts Amherst where the soil sample containing the phage was collected.", "finder_name": "Tanya Wadekar", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.38128 N", "found_GPS_long": "72.52998 E", "found_year": 2024, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found in front of Cance Hall located in the Southwest Residential Area in University of Massachusetts Amherst. Located ~3 feet from the base of a small tree. The soil was frozen due to weather conditions at the time. When thawed, soil appeared to be somewhat damp. Light grass above the soil was scraped away before collecting soil samples.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "PODO", "plaque_notes": "The diameter of the phage varies from around 1 mm to 3 mm. Phage appears clear and has a circular shape with defined edges.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KanyeSouthwest_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-03-28T12:01:09-04:00", "date_modified": "2025-04-04T11:37:38-04:00" }, { "phage_name": "Kanzan", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "Kanzan is a type of cherry blossom tree, one that grew up in my front yard. It also represents my family line in my sorority.", "finder_name": "Lauren Redwood", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2022, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "This phage was found from the dirt/grass outside of Clapp hall.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small pinpoint plaques that can take up to 48 hours to fully appear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kanzan_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-08-04T11:27:33-04:00", "date_modified": "2022-10-20T11:27:17-04:00" }, { "phage_name": "Kapa", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "First letter of our initials", "finder_name": "Palina Yakimovich, Ava Presnal, Alice Zou, Neville", "found_city": "Amherst", "found_state": "MA", "found_country": "United State", "found_GPS_lat": "42.389376 N", "found_GPS_long": "72.524383 W", "found_year": 2023, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Found under a tree surrounded by grass in a semi- muddy area", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "cloudy, bullseye, roughly 3mm- 5mm", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/kapa_empic_thumb.jpg", "dnam_file": null, "date_added": "2023-10-26T11:20:54-04:00", "date_modified": "2024-10-03T12:08:32-04:00" }, { "phage_name": "Kapiushon", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name was chosen because it is the Russian nickname of a TV show character from the tv The Arrow.", "finder_name": "S. Selick, D. Shapiro, N. Spence, S. Harlow", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.391728 N", "found_GPS_long": "72.524102 W", "found_year": 2024, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "From the soil underneath a tree near one of our science buildings near the centre of campus, soil was covered in mulch and moist", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "1 mm in size, nearly circular or circularly shaped, clear centres and defined edges, no sign of halo or bullseye", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-28T11:15:19-04:00", "date_modified": "2025-04-04T11:37:38-04:00" }, { "phage_name": "KappaFarmDelta", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We are all in a sorority/fraternity, so we combined Kappa Kappa Gamma, Farmhouse, and Kappa Delta.", "finder_name": "Sophie Grace, Palmer Wright, Catherine Loftus", "found_city": "Lincolm", "found_state": "NE", "found_country": "United States", "found_GPS_lat": "40.81937 N", "found_GPS_long": "96.69705 W", "found_year": 2021, "p_institution": { "institution_code": "UNEL", "institution_name": "University of Nebraska-Lincoln", "institution_logo": "https://phagesdb.org/media/institutions/UNebraska_Lincoln.jpg", "institution_url": "http://www.unl.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.820246", "institution_longitude": "-96.70047" }, "enriched_sample": true, "discovery_notes": "These phage were found in the backyard of the Kappa Kappa Gamma house on UNL's campus. It was found in the middle of a construction site. It was 2.5 inches deep, and the ambient temperature was 85 degrees (Farenheit).", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "CV", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "We believe we have a temperate phage, since the plaques are turbid.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2022-01-21", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1075, "finishing_reactions": 0, "genome_length": 49606, "gcpercent": "67.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "TCGCCGGTGA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 81, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KappaFarmDelta_CompleteNotes.xlsx", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KappaFarmDelta_Minimal_Final_kOcfRsO.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/KappaFarmDelta_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/KappaFarmDelta_CoverSheet.pdf", "submitted_annotation_date": "2022-06-23T13:57:19-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KappaFarmDelta_flat_vUWmRmk.txt", "qced_genbank_file_date": "2022-06-23T13:57:19-04:00", "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "ON970567", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KappaFarmDelta.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-09T16:50:53-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kapport", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name of this phage originates from the combination of both the hometowns of the discoverers.", "finder_name": "Ella Nielsen and Alii TM", "found_city": "Spokane", "found_state": "WA", "found_country": "United States of America", "found_GPS_lat": "47.6395 N", "found_GPS_long": "117.42 W", "found_year": 2023, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We obtained our sample from enriched soil found at the provided coordinates. Our sample was not collected on the Gonzaga University campus.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The morphology of our phage seems to represent plaques that range in various sizes from around 1-2mm. The plaques stay uniformly circular, with the center of each plaque being semi-opaque to transparent. There are numerous amounts of plaques on our petri dish with an estimation of about 140. All of the plaques are congregated and grouped together. Our dilution factor for the given image is 10^-4.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kapport_Plaque_WTNdQjx.JPG", "em_file": "https://phagesdb.org/media/emPics/Kapport_EMPic_YHbHxZT.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kapport_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/TEM_200_pixels_for_poster.png", "dnam_file": null, "date_added": "2023-11-08T08:38:08-05:00", "date_modified": "2024-10-08T10:20:07-04:00" }, { "phage_name": "Kappy", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jessica Hawkinson", "found_city": "Pullman ", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.729811 N", "found_GPS_long": "117.165336 W", "found_year": 2011, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": true, "discovery_notes": "Found in moist garden top soil approximately 0.5 inches deep from under a variety of flowers. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Approximately 2mm in diameter. Mostly turbid, but in high concentrations clear plaque formations occur as well. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kappy_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kappy_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2011-11-16T09:38:17-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Kaprizov", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Nick Peters", "found_city": "ames", "found_state": "IA", "found_country": "united states", "found_GPS_lat": "42.028962 N", "found_GPS_long": "93.647385 W", "found_year": 2022, "p_institution": { "institution_code": "IASU", "institution_name": "Iowa State University", "institution_logo": "https://phagesdb.org/media/institutions/IowaStateUniversity.png", "institution_url": "https://www.iastate.edu/", "institution_city": "Ames", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.026380", "institution_longitude": "-93.64653" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "UPitt GPCL", "facility_name": "University of Pittsburgh Genomics and Proteomics Core Laboratories", "contact_person": "", "shipping_address": "", "facility_website": "http://www.genetics.pitt.edu/" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kaprizov_EMPic.pdf", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-28T13:57:40-05:00", "date_modified": "2024-02-25T15:27:53-05:00" }, { "phage_name": "Kaptain", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "First family dog that was very beloved.", "finder_name": "Arlyn Higham", "found_city": "Auckland", "found_state": "", "found_country": "New Zealand", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2021, "p_institution": { "institution_code": "MASY", "institution_name": "Massey University", "institution_logo": "https://phagesdb.org/media/institutions/masseyUniversityLogo.png", "institution_url": "http://www.massey.ac.nz/", "institution_city": "Auckland Campus", "institution_state": "", "institution_country": "New Zealand", "institution_latitude": "-40.387504", "institution_longitude": "175.6165" }, "enriched_sample": false, "discovery_notes": "Found in compost primarily consisting of leaf and grass matter.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Genphage produced medium sized plaques with a faint halo around the edges.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", 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"32.7843 N", "found_GPS_long": "79.9397 W", "found_year": 2019, "p_institution": { "institution_code": "CCHA", "institution_name": "College of Charleston", "institution_logo": "https://phagesdb.org/media/institutions/cofc_logo_red.jpg", "institution_url": "http://www.cofc.edu/", "institution_city": "Charleston", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "32.783974", "institution_longitude": "-79.93820" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 4, "growth_notes": "", "pcluster": { "cluster": "D", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": 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"species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-09T15:35:49-05:00", "date_modified": "2020-09-17T14:07:02-04:00" }, { "phage_name": "Karen5", "old_names": "Shelle", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named Karen5 after my car", "finder_name": "Meredith Poppe", "found_city": "Falls City", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2018, "p_institution": { "institution_code": "NEBW", "institution_name": "Nebraska Wesleyan University", "institution_logo": "https://phagesdb.org/media/institutions/nwu_logo2.jpg", "institution_url": "http://www.nebrwesleyan.edu/", "institution_city": "Lincoln", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.839041", "institution_longitude": "-96.64760" }, "enriched_sample": null, "discovery_notes": "taken from a garden in a backyard", "isolation_temperature": 21, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "it is a siphoviridae. it has a long, flexible tail", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "paraoxydans", "strain_name": "NWU1", "strain_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isolated by Nebraska Wesleyan University" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 45, "genus": "Microbacterium", "species_name": "paraoxydans", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Karen5_Plaque.HEIC", "em_file": "https://phagesdb.org/media/emPics/Karen5_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Jomo_Plaque_YqnhXPx.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Jomo_EMPic_BfZvwyC.jpg", "dnam_file": null, "date_added": "2018-11-08T21:47:14-05:00", "date_modified": "2020-09-17T14:11:44-04:00" }, { "phage_name": "KarenJYu", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "\"Karen\" is the researchers middle name and \"JYu\" is the initial of hr first name and hr complete last name.", "finder_name": "Jami Yu", "found_city": "North Wildwood", "found_state": "NJ", "found_country": "United States", "found_GPS_lat": "38.0 N", "found_GPS_long": "74.0 W", "found_year": 2024, "p_institution": { "institution_code": "RWNU", "institution_name": "Rowan University", "institution_logo": "https://phagesdb.org/media/institutions/RWNU.png", "institution_url": "https://www.rowan.edu/", "institution_city": "Glassboro", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "Damp, sandy soil collected in a public shore line.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The tail is 140 nm in length while the capsid is 60nm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-11-21T14:17:23-05:00", "date_modified": "2025-04-04T11:37:28-04:00" }, { "phage_name": "KarenTech", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Cy Stelle, Bo Hann, Luke Almos, Patrick Mcgeady", "found_city": "", "found_state": "MT", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2018, "p_institution": { "institution_code": "MTEC", "institution_name": "Montana Technological University", "institution_logo": "https://phagesdb.org/media/institutions/mtechlogo.png", "institution_url": "http://www.mtech.edu/", "institution_city": "Butte", "institution_state": "MT", "institution_country": "USA", "institution_latitude": "46.012558", "institution_longitude": "-112.5576" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-10-31T10:02:40-04:00", "date_modified": "2025-04-04T11:37:34-04:00" }, { "phage_name": "Karev", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I am naming this phage after the doctor on \"Grey's Anatomy\". In the show this character is really strong and caring. While a different type of strong and caring altogether (strong in that it wipes out the bacteria host and caring in it's goal to make more phages and infect more bacteria), I still feel the name will work for this phage.", "finder_name": "Christopher Manko", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.4436 N", "found_GPS_long": "79.9552 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "This phage was gotten from the William Pitt Union under a flower bed. It was taken shortly after it had rained and the soil seemed slightly damp. It was taken on 08/05/2017 at 4:14 p.m.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaque was clear and identified in the first round of plaque purification", "lysogeny_notes": "The phage is lytic as is indicated by the fact the plaques it formed were clear.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Karev_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Karev_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Karev_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Karev_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Karev_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-09-22T11:07:24-04:00", "date_modified": "2020-09-17T14:08:36-04:00" }, { "phage_name": "Karew", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is a mix of my name Karissa and the name Drew. I chose this name because I wanted my phage to be named after me but I did not want to name it Karissa.", "finder_name": "Karissa Spokane", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.444056 N", "found_GPS_long": "79.953632 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Soil was collected outside the Cathedral of Learning amongst purple flowers. Soil was shaded from the flowers and felt rather moist. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques have have a halo around them that make up about 75% of the total plaque. Only about 25% are clear. They have a slight tear drop shape to them. Range from 2mm to 4mm in diameters. ", "lysogeny_notes": "This plaque did not form lysogens.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Karew_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Karew_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Karew_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Karew_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Karew_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-09-22T11:31:00-04:00", "date_modified": "2020-09-17T14:08:36-04:00" }, { "phage_name": "Karfitsa", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Karfitsa is greek for pinprick, and since the plaques this phage creates are so small and the word bacteriophage is greek in origin it seemed fitting", "finder_name": "Andrew Davis, Alex Brandafi", "found_city": "Pinebush", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "41.66879 N", "found_GPS_long": "74.26361 W", "found_year": 2022, "p_institution": { "institution_code": "MARC", "institution_name": "Marist University", "institution_logo": "https://phagesdb.org/media/institutions/marist-new-navigation-logo.png", "institution_url": "https://www.marist.edu/", "institution_city": "Poughkeepsie", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Found in a backyard, Pinebush in the Hudson Valley", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Minuscule, Clear, Numerous", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Karfitsa_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Karfitsa_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Karfitsa_Plaque_Thumb.jpeg", "em_thumb_file": "https://phagesdb.org/media/emPics/Karfitsa_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2022-11-16T08:42:36-05:00", "date_modified": "2024-02-25T15:27:54-05:00" }, { "phage_name": "Karhdo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from a combination of initials from my personal name.\r\n\r\nK-hristian A-drian R-osales\r\nKAR\r\nK-h-ristian A-d-rian R-o-sales\r\nHDO\r\n\r\n=KARHDO", "finder_name": "Khristian Rosales", "found_city": "Las Vegas", "found_state": "NV", "found_country": "United States", "found_GPS_lat": "36.131376 N", "found_GPS_long": "115.240078 W", "found_year": 2022, "p_institution": { "institution_code": "UNLV", "institution_name": "University of Nevada Las Vegas", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofNevadaLasVegas.jpg", "institution_url": "https://www.unlv.edu/", "institution_city": "Las Vegas", "institution_state": "NV", "institution_country": "USA", "institution_latitude": "36.108190", "institution_longitude": "-115.1431" }, "enriched_sample": true, "discovery_notes": "Organic garden soil. The soil was recovered from 4-6 inches deep in the dirt.", "isolation_temperature": 27, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "The plaques are cloudy. Have a diameter of 0.5. The outer edges have an irregular circular shape to them. Lysogen can be seen in the center of the plaques.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2023-01-09", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3421, "finishing_reactions": 0, "genome_length": 55379, "gcpercent": "61.5", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTAGGCGC", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 100, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Karhdo_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2023-06-07T14:42:55-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Karhdo_flat.txt", "qced_genbank_file_date": "2023-06-07T14:42:55-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OR159669", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Karhdo_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Karhdo_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Karhdo_Digest.jpeg", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Karhdo.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Karhdo_Plaque_Thumb2.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-02T07:41:13-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kari", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "This phage is named after my oldest daughter Karoline, \"Kari\" for short.", "finder_name": "Deborah Jacobs-Sera", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.443832 N", "found_GPS_long": "79.951982 W", "found_year": 2023, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "This sample was collected from under a rock in front of the log cabin situated on the lawn of the Cathedral of Learning.", "isolation_temperature": 37, "growth_notes": "", "pcluster": { "cluster": "P", "temperate": true }, "psubcluster": { "subcluster": "P1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-02-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 20260, "finishing_reactions": 0, "genome_length": 47523, "gcpercent": "67.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 12, "overhang_sequence": "CCCGCCCCCCGA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 80, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kari_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2025-06-05T07:00:00-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kari.gbf", "qced_genbank_file_date": "2025-06-05T07:00:00-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PV755393", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kari_Plaque.png", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kari.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kari_Plaque_thumb_NFtoc9f.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-22T20:01:02-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Karia", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kennedy Cimone Shannon and Aarianna Madison Bess", "found_city": "Washington", "found_state": "DC", "found_country": "United States", "found_GPS_lat": "38.887528 N", "found_GPS_long": "76.93375 W", "found_year": 2024, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-11T07:46:29-04:00", "date_modified": "2025-04-04T11:37:32-04:00" }, { "phage_name": "Karimac", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Richard Hale", "found_city": "Fort Worth", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "32.765556 N", "found_GPS_long": "97.478611 W", "found_year": 2012, "p_institution": { "institution_code": "UNTD", "institution_name": "University of North Texas", "institution_logo": "https://phagesdb.org/media/institutions/UNT-01.jpg", "institution_url": "http://www.unt.edu/", "institution_city": "Denton", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.207825", "institution_longitude": "-97.15253" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "BE", "temperate": false }, "psubcluster": { "subcluster": "BE2" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2014-02-17", "seq_facility": { "short_name": "UNT", "facility_name": "University of North Texas", "contact_person": "Richard Hale/Lee Hughes", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "IONTORRENT", "method_name": "Ion Torrent" }, "coverage": 229, "finishing_reactions": 5, "genome_length": 131909, "gcpercent": "49.4", "end_type": "TREP", "repeat_length": 12590, "end_notes": "Buildups of reads from Ion Torrent sequencing, flanking a region of double coverage.", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 241, "num_tRNAs": 43, "num_tmRNAs": 1, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Karimac_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Karimac_Minimal_Final_HKlqwEp.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Karimac_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Karimac_CoverSheet.pdf", "submitted_annotation_date": "2018-07-03T10:35:19-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Karimac_flat_2OVuLPh.txt", "qced_genbank_file_date": "2018-07-03T10:35:19-04:00", "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH590599", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Karimac.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-07-18T15:34:58-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Karkharias", "old_names": "Sharkesha", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My lab partner and I have a special bond formed through our love of sharks. This is so special to us that we had to incorporate it into our name.", "finder_name": "Allison Kenney and Vanessa Mleczko", "found_city": "Danvers", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.57045 N", "found_GPS_long": "70.97622 W", "found_year": 2023, "p_institution": { "institution_code": "MSMC", "institution_name": "Mount Saint Mary College", "institution_logo": "https://phagesdb.org/media/institutions/MountSaintMaryCollege.JPG", "institution_url": "http://www.msmc.edu/", "institution_city": "Newburgh", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.512859", "institution_longitude": "-74.01247" }, "enriched_sample": false, "discovery_notes": "This phage was discovered in front of a hotel from soil under a tree.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "FA", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-01-17", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1270, "finishing_reactions": 0, "genome_length": 42611, "gcpercent": "65.2", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 9, "overhang_sequence": "CGCCGGAGA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 66, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Karkharias_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2024-07-25T16:13:02-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Karkharias_flat.txt", "qced_genbank_file_date": "2024-07-25T16:13:02-04:00", "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PQ184797", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Karkharias_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/Karkharias_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Karkharias.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-05T09:36:15-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Karki", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name for this phage came from my last name.", "finder_name": "Jeniush Karki", "found_city": "Everett", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.40674 N", "found_GPS_long": "71.03987 W", "found_year": 2022, "p_institution": { "institution_code": "ENZC", "institution_name": "Eastern Nazarene College", "institution_logo": "https://phagesdb.org/media/institutions/eastern_nazarene.png", "institution_url": "https://enc.edu/", "institution_city": "Quincy", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "I discovered this phage in the garden of my house early in the morning. I used a plastic spoon to dig out the soil and placed them inside a zip-lock bag and brought them over to lab for isolation.", "isolation_temperature": 20, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques were medium-sized, clear, and showed consistency in terms of shape and form.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Karki_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Karki_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-07T08:18:51-05:00", "date_modified": "2024-02-25T15:27:53-05:00" }, { "phage_name": "Karl", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It's a family name. ", "finder_name": "Ondraya Romero and Eric Gutierrez", "found_city": "Spokane ", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.666925 N", "found_GPS_long": "117.402631 W", "found_year": 2013, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Our soil sample was acquired from a soil sample from our schools flower bed right outside our building. The soil was damp that day because it had rained the night before. Our phage doesn't grow at 37ºC. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "It is a lytic phage. The size of our plaques are roughly 5 cm. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Karl_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Karl_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Karl_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Karl_EMPic_Thumb.png", "dnam_file": null, "date_added": "2013-11-08T09:29:33-05:00", "date_modified": "2020-09-17T14:05:33-04:00" }, { "phage_name": "Karleandregan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage name came from a combination of all three lab partners; Alejandra Casper Sanchez, Karla Castillo, and Teagan Robinson.", "finder_name": "Teagan R., Karla C., Alejandra C.S.", "found_city": "Boulder", "found_state": "CO", "found_country": "United States", "found_GPS_lat": "40.00876 N", "found_GPS_long": "105.26804 W", "found_year": 2024, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "The phage was isolated from a dry dirt sample from the base of a tree.", "isolation_temperature": 14, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": null, "morphotype": "", "plaque_notes": "The phage produced lytic plaques that were small, circular, clear, and about 1mm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Karleandregan_Plaque.png", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Karleandregan_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-04-24T10:00:13-04:00", "date_modified": "2025-04-04T11:37:41-04:00" }, { "phage_name": "Karlek", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Sarah Getz", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "39.254166 N", "found_GPS_long": "76.711666 W", "found_year": 2010, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": null, "discovery_notes": "The phage was obtained on 9/12/10 from a natural compost pile with leaves and twigs covering the pile. Soil was slightly moist and the air temperature was 17 degrees Celsius. The sample was selected from the surface of the compost pile. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques were clear, round, and approximately three millimeters in size.They had a gray outer edge and while some appear to be smaller than others they were all from the same phage as determined through multiple titrations.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Karlek_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Karlek_EMPic_Thumbs.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Karlek_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-12-04T20:43:48-05:00", "date_modified": "2020-07-16T13:05:23-04:00" }, { "phage_name": "KarlStef", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This is my Middle Name", "finder_name": "Johana Florestal", "found_city": "Spring Valley", "found_state": "NY", "found_country": "United states", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2020, "p_institution": { "institution_code": "DCBL", "institution_name": "Dominican University New York", "institution_logo": "https://phagesdb.org/media/institutions/CV_DU_stacked_2022.png", "institution_url": "https://www.duny.edu/", "institution_city": "Orangeburg", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.039643", "institution_longitude": "-73.94976" }, "enriched_sample": false, "discovery_notes": "Found outside of my garage", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Large lytic plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/KarlStef_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-11-17T14:09:30-05:00", "date_modified": "2021-11-28T19:25:15-05:00" }, { "phage_name": "Karlyn", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from Karla and Kailyn. So, KAR came from Karla and LYN came from Kailyn. ", "finder_name": "Karla Vazquez and Kailyn Grant", "found_city": "Montclair", "found_state": "NJ", "found_country": "USA", "found_GPS_lat": "40.8591 N", "found_GPS_long": "74.1987 W", "found_year": 2015, "p_institution": { "institution_code": "MCSU", "institution_name": "Montclair State University", "institution_logo": "https://phagesdb.org/media/institutions/msu_.jpg", "institution_url": "http://www.montclair.edu/", "institution_city": "Montclair", "institution_state": "NJ", "institution_country": "USA", "institution_latitude": "40.861767", "institution_longitude": "-74.19856" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 74, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Karlyn_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Karlyn_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-12-02T13:17:28-05:00", "date_modified": "2020-09-17T14:06:43-04:00" }, { "phage_name": "Karma", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Alysan Dahl and Maria Llanos", "found_city": "Boulder", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "40.004283 N", "found_GPS_long": "105.266138 W", "found_year": 2013, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "Under a tree\r\nCollected on 9/15/13\r\nCollected at 8:03 PM\r\n12 °C", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Clear, Lytic Plaques\r\n2 mm\r\n48 hour incubation period at 37 °C\r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Karma_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Karma_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Karma_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Karma_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Karma_EMPic_Thumbs.jpg", "dnam_file": null, "date_added": "2013-11-26T12:11:34-05:00", "date_modified": "2020-09-17T14:05:23-04:00" }, { "phage_name": "Karma19", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my German Shepherd, Karma, who was born in 2019.", "finder_name": "Nicholas Harvey", "found_city": "Salisbury", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "39.755164 N", "found_GPS_long": "79.0838 W", "found_year": 2021, "p_institution": { "institution_code": "ALGY", "institution_name": "Allegany College of Maryland", "institution_logo": "https://phagesdb.org/media/institutions/allegany2.jpg", "institution_url": "", "institution_city": "Cumberland", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Found in residential area in back yard, wet, clay-like soil, various debris such as grass and twigs, gathered approx 5cm below surface.", "isolation_temperature": 11, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques were typically clustered together, smaller in diameter, no turbidness, no halo or bullseye pattern.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Karma19_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Karma19_Plaque.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-20T14:58:19-04:00", "date_modified": "2023-11-20T21:56:42-05:00" }, { "phage_name": "Karmen16", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage after my horse Karmen and the year 2016.", "finder_name": "Danielle Barman", "found_city": "River Falls", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "92.633205 W", "found_year": 2016, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "The soil was found at the end of the Swinging Bridge by the Kinnickinnic River in River Falls, WI. The soil was collected 9/11/16 at 4:30pm on a sunny 77degree day. The soil was on the surface and moist from rain the previous day. My phage is most likely part of the AU Cluster due to PCR.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "My plaques were small/medium in size. They were mostly clear with a slight halo around them. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-21T14:06:43-05:00", "date_modified": "2020-09-17T14:07:26-04:00" }, { "phage_name": "Karnowski", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Hope Needham and Rika Linman", "found_city": "Spokane ", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-09T08:04:57-05:00", "date_modified": "2020-09-17T14:09:02-04:00" }, { "phage_name": "KarnowskiBeard", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kaitlyn Caniglia and Jack White", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.666554 N", "found_GPS_long": "117.402839 W", "found_year": 2017, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "This is located at the SW corner of the Herak building on Gonzaga University's campus.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Our phage forms 2-3mm circular, clear plaques.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KarnowskiBeard_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/KarnowskiBeard_EMPic.tiff", "digest_file": "https://phagesdb.org/media/digestPics/KarnowskiBeard_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KarnowskiBeard_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KarnowskiBeard_EMPic_Thumb.png", "dnam_file": null, "date_added": "2017-04-13T11:19:56-04:00", "date_modified": "2020-09-17T14:09:02-04:00" }, { "phage_name": "Karo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Marlaina Schmitt", "found_city": "Manchester", "found_state": "NH", "found_country": "United States", "found_GPS_lat": "43.082894 N", "found_GPS_long": "71.517288 W", "found_year": 2024, "p_institution": { "institution_code": "UNHM", "institution_name": "University of New Hampshire at Manchester", "institution_logo": "https://phagesdb.org/media/institutions/unh_manchester.png", "institution_url": "", "institution_city": "Manchester", "institution_state": "NH", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-01-27T10:10:24-05:00", "date_modified": "2025-01-27T10:10:24-05:00" }, { "phage_name": "Karp", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named our phage after our Washington University Student Associate, Leo Karp.", "finder_name": "Isabel Silverman and Annabelle Laughlin", "found_city": "St. Louis", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "38.6362 N", "found_GPS_long": "90.2913 W", "found_year": 2019, "p_institution": { "institution_code": "WUSL", "institution_name": "Washington University in St. Louis", "institution_logo": "https://phagesdb.org/media/institutions/WashU2_.jpg", "institution_url": "http://www.wustl.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.649087", "institution_longitude": "-90.31083" }, "enriched_sample": false, "discovery_notes": "Karp was found in the St. Louis Zoo is Forest Park. The soil artificially-applied soil (not naturally occuring), layered beneath wood chips\r\nThe soil was rich and moist with little organic matter.", "isolation_temperature": 27, "growth_notes": "", "pcluster": { "cluster": "BK", "temperate": false }, "psubcluster": { "subcluster": "BK1" }, "morphotype": "", "plaque_notes": "Small plaques, with around a 0.75 mm diameter.\r\nThey are not perfectly circular, with jagged but crisp edges.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-06-24", "seq_facility": { "short_name": "WASHU", "facility_name": "The McDonnell Genome Institute at Washington University", "contact_person": "", "shipping_address": "", "facility_website": "http://genome.wustl.edu/" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 92, "finishing_reactions": 0, "genome_length": 130557, "gcpercent": "47.0", "end_type": "TREP", "repeat_length": 734, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 235, "num_tRNAs": 34, "num_tmRNAs": 1, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Karp_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2021-08-02T15:56:35-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Karp_flat.txt", "qced_genbank_file_date": "2021-08-02T15:56:35-04:00", "isolation_host": { "genus": "Streptomyces", "species": "viridochromogenes", "strain_name": "DSM40736", "strain_species": { "id": 39, "genus": "Streptomyces", "species_name": "viridochromogenes", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 39, "genus": "Streptomyces", "species_name": "viridochromogenes", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MZ820095", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Karp_Plaque.pdf", "em_file": "https://phagesdb.org/media/emPics/Karp_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Karp_Digest.pdf", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Karp.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Karp_Plaque_Thumb.jpeg", "em_thumb_file": "https://phagesdb.org/media/emPics/Karp_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-10-25T01:48:30-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "KarrieMoto", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named our phage after our incredible Biology 105 Lab TA, Karrie Miyamoto.", "finder_name": "Samantha Heilman, Azia Sandhu", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667313 N", "found_GPS_long": "117.402973 E", "found_year": 2016, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "Our phage was found in soil collected in a flower bed outside the steps of Hughes Hall at Gonzaga University. The soil was dark and slightly damp when collected.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Our plaque is approximately 1.5 mm, perfectly round, and has a clear center with a turbid halo.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-12-01T23:05:23-05:00", "date_modified": "2020-09-17T14:07:37-04:00" }, { "phage_name": "KarsJo314", "old_names": "KJH314", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The letters are my nephew's initials and birth date. ", "finder_name": "Lexi Jinks", "found_city": "Wamego", "found_state": "KS", "found_country": "USA", "found_GPS_lat": "39.245083 N", "found_GPS_long": "96.316694 W", "found_year": 2015, "p_institution": { "institution_code": "KSSU", "institution_name": "Kansas State University", "institution_logo": "https://phagesdb.org/media/institutions/kstate.jpg", "institution_url": "http://www.k-state.edu/", "institution_city": "Manhattan", "institution_state": "KS", "institution_country": "United States", "institution_latitude": "39.197485", "institution_longitude": "-96.58606" }, "enriched_sample": true, "discovery_notes": "Collected on a farm, specifically the coral, at 7am at 59 degrees Fahrenheit. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Small plaques, 1mm, that were clear in the middle and cloudy around the edges. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KJH314_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KarsJo314_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2015-11-17T16:22:16-05:00", "date_modified": "2020-09-17T14:06:18-04:00" }, { "phage_name": "Kartie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kartie is my celebrity relationship name ", "finder_name": "Kelsey Brown", "found_city": "Butte", "found_state": "MT", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2018, "p_institution": { "institution_code": "MTEC", "institution_name": "Montana Technological University", "institution_logo": "https://phagesdb.org/media/institutions/mtechlogo.png", "institution_url": "http://www.mtech.edu/", "institution_city": "Butte", "institution_state": "MT", "institution_country": "USA", "institution_latitude": "46.012558", "institution_longitude": "-112.5576" }, "enriched_sample": null, "discovery_notes": "Found in a community garden", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-14T13:41:12-05:00", "date_modified": "2018-11-14T13:41:12-05:00" }, { "phage_name": "Kartoffel", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Sarah Simon", "found_city": "Boston", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.346511 N", "found_GPS_long": "71.074119 W", "found_year": 2015, "p_institution": { "institution_code": "CAMU", "institution_name": "Carnegie Mellon University", "institution_logo": "https://phagesdb.org/media/institutions/Burgundy_CMU_JPG_Logo.jpg", "institution_url": "http://www.cmu.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.442741", "institution_longitude": "-79.94255" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "clear plaques\r\nno halo \r\nnot large ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kartoffel_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kartoffel_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-11-19T16:12:58-05:00", "date_modified": "2020-09-17T14:06:15-04:00" }, { "phage_name": "Karzzo", "old_names": "MicroMuncher", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Nyla Kargbo, Mar Cuzzone", "found_city": "Easton", "found_state": "PA", "found_country": "Northampton", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2025, "p_institution": { "institution_code": "LAFA", "institution_name": "Lafayette College", "institution_logo": "https://phagesdb.org/media/institutions/Lafayette.png", "institution_url": "http://www.lafayette.edu/", "institution_city": "Easton", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "40.698482", "institution_longitude": "-75.20955" }, "enriched_sample": false, "discovery_notes": "Quad area, not much traction", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-04-24T10:54:04-04:00", "date_modified": "2025-04-24T10:54:38-04:00" }, { "phage_name": "Kase", "old_names": "KASE", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The first Initial of everyone in our group put together.", "finder_name": "E.Fernandes, K.Lee, A.Panagiotou, S.Chan", "found_city": "Amherst", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.4 N", "found_GPS_long": "72.5 W", "found_year": 2023, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "located behind the Morrill science building on UMass Amherst campus.", 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"species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/kase_plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/kase_EMpic_thumb.png", "dnam_file": null, "date_added": "2023-03-30T09:02:56-04:00", "date_modified": "2024-10-03T12:08:30-04:00" }, { "phage_name": "Kaseim", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "M. Gomez, F. Joy, B. Ramcoobeer, K. Gregg", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.4456 N", "found_GPS_long": "79.96129 W", "found_year": 2022, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "The soil sample was collected on 09/07/2022 at 21:92 outside the Pittsburgh VA Medical Center.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "CS", "temperate": false }, "psubcluster": { "subcluster": "CS3" }, "morphotype": "SIPHO", "plaque_notes": "After at least 5 days of incubation at 30°C: range of small, circular, clear plaques approximately 1.5 mm in diameter.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2023-09-05", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 40, "finishing_reactions": 0, "genome_length": 72748, "gcpercent": "59.2", "end_type": "TREP", "repeat_length": 184, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 92, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kaseim_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2025-06-25T10:33:40-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kaseim_flat.txt", "qced_genbank_file_date": "2025-06-25T10:33:40-04:00", "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PV915795", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kaseim_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kaseim_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kaseim.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-10-11T11:10:30-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kasen3", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named the phage after my nephew because like him, I have developed an interesting love for it. 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"seq_finished": true, "date_finished": "2017-01-05", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 3200, "finishing_reactions": 0, "genome_length": 41890, "gcpercent": "66.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CCCCATGGCAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 64, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kasen3_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-08-15T13:41:11-04:00", 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"genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MH779509", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kasen3.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2016-11-16T22:11:46-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kasendit", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Anne Kasenchak, Jessica Workman", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.730278 N", "found_GPS_long": "117.165556 W", "found_year": 2018, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-14T01:31:04-05:00", "date_modified": "2020-09-17T14:09:44-04:00" }, { "phage_name": "Kash8", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name is just the first initial of our group members' names followed by our favorite number,", "finder_name": "Hamsini K., Sharayu T., Kevin A., Aditya B.", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.38295 N", "found_GPS_long": "72.53072 W", "found_year": 2024, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "The legendary soil was found by a basketball court on our college campus.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "There were five plaques on the original agar plate from the first isolation. One of the plaques was far bigger than the rest, with a diameter of 10 mm. It is clear with a halo surrounding. The other four plaques each have a diameter of 1 mm spread out over the plate; they are all clear and circular. There are no bubbles on the plate, either, as a form of contamination.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-22T10:38:16-04:00", "date_modified": "2025-04-04T11:37:38-04:00" }, { "phage_name": "Kashanjo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage's name is the familiarization and transliteration of the common name \"Cassandra\" into Esperanto.", "finder_name": "Dale Mountain", "found_city": "Tampa", "found_state": "FL", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "USFL", "institution_name": "University of South Florida", "institution_logo": "https://phagesdb.org/media/institutions/UniversityofSouthFlorida.jpg", "institution_url": "http://www.usf.edu/", "institution_city": "Tampa", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "28.058438", "institution_longitude": "-82.41395" }, "enriched_sample": false, "discovery_notes": "Phage was isolated from soil fertilized with mule stool.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques have two consistent morphologies, with any one plaque being either small or large; there is no noticeable trend for plaque-formation one way or the other.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-10-31T20:33:06-04:00", "date_modified": "2020-09-17T14:08:06-04:00" }, { "phage_name": "KashFlow", "old_names": "TiterWoods", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kyle Ross", "found_city": "Holland", "found_state": "MI", "found_country": "USA", "found_GPS_lat": "42.78746159455409", "found_GPS_long": "-86.1025187", "found_year": 2016, "p_institution": { "institution_code": "HOPE", "institution_name": "Hope College", "institution_logo": "https://phagesdb.org/media/institutions/Hope.jpg", "institution_url": 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"sequencing_notes": "60% of reads contain a 806 bp deletion of consensus 45103 - 45908 bp", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 233, "num_tRNAs": 2, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KashFlow_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KashFlow_Minimal_Final_Gvk4kdC.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/KashFlow_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/KashFlow_CoverSheet.pdf", "submitted_annotation_date": "2020-11-23T14:07:13-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KashFlow.gbf", "qced_genbank_file_date": "2020-11-23T14:07:13-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", 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", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "griseus", "strain_name": "ATCC 10137", "strain_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "10137", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 4, "genus": "Streptomyces", "species_name": "griseus", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kashmir_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kashmir_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-19T13:01:11-05:00", "date_modified": "2020-05-29T14:53:39-04:00" }, { "phage_name": "Kashmiri", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Madeleine O'Connor, Sherry Soyke", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.725464 N", "found_GPS_long": "117.1569 W", "found_year": 2018, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small, clear plaques only throughout period of experimentation indicating only lytic phage found under laboratory conditions. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-04-25T13:13:55-04:00", "date_modified": "2020-09-17T14:09:44-04:00" }, { "phage_name": "KaSi", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name KaSI contains the first letter of one of the founder’s first name, Kim Doan (K). It also contains the initials of the second founder, Summer Ishbib (SI). This is why there are some capital letters and some that are not.", "finder_name": "Summer Ishbib, Kim Doan", "found_city": "Allen", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.089583 N", "found_GPS_long": "96.70025 W", "found_year": 2018, "p_institution": { "institution_code": "CLNC", "institution_name": "Collin College", "institution_logo": "https://phagesdb.org/media/institutions/CollinCollege_QGpldZv.jpg", "institution_url": "http://www.collin.edu/", "institution_city": "Plano", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.218037", "institution_longitude": "-96.64176" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Round, clear, circular plaques. 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"https://phagesdb.org/media/digestPics/KaSi_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KaSi_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KaSi_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-11-12T22:17:45-05:00", "date_modified": "2020-09-17T14:10:17-04:00" }, { "phage_name": "Kaslice", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Jackson Holman", "found_city": "Bowling Green", "found_state": "KY", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2023, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "Soil Sample", "isolation_temperature": 27, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-09-26T09:50:08-04:00", "date_modified": "2023-09-26T09:50:08-04:00" }, { "phage_name": "Kasper", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Halloween season", "finder_name": "Taylor Wood and Cheryl Murbach", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.666389 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"41.301944 N", "found_GPS_long": "75.721111 W", "found_year": 2018, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques are small and turbid.", "lysogeny_notes": "Kasta does not make lysogens.", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", 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null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/katabatic_plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/katabatic_empic_thumb.png", "dnam_file": null, "date_added": "2023-04-10T10:20:17-04:00", "date_modified": "2024-02-25T15:28:27-05:00" }, { "phage_name": "Katalie", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kaylee Freid and Natalie Muldowney", "found_city": "St Louis", "found_state": "MO", "found_country": "United States", "found_GPS_lat": "38.640553 N", "found_GPS_long": "90.291436 W", "found_year": 2020, "p_institution": { "institution_code": "WUSL", "institution_name": "Washington University in St. Louis", "institution_logo": "https://phagesdb.org/media/institutions/WashU2_.jpg", "institution_url": "http://www.wustl.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.649087", "institution_longitude": "-90.31083" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "BD", "temperate": true }, "psubcluster": { "subcluster": "BD1" }, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-02-12", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 188, "finishing_reactions": 0, "genome_length": 51271, "gcpercent": "65.6", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 11, "overhang_sequence": "CGGTCAGTGAT", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 72, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Katalie_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2021-08-12T18:06:44-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Katalie_flat.txt", "qced_genbank_file_date": "2021-08-12T18:06:44-04:00", "isolation_host": { "genus": "Streptomyces", "species": "lividans", "strain_name": "JI 1326", "strain_species": { "id": 3, "genus": "Streptomyces", "species_name": "lividans", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 3, "genus": "Streptomyces", "species_name": "lividans", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MZ820088", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Katalie_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Katalie_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Katalie_Digest.pdf", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Katalie.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Katalie_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Katalie_EMpic_thumb.jpg", "dnam_file": null, "date_added": "2020-11-11T21:39:15-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Katalie136", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Discoverer's names and favorite numbers", "finder_name": "Kate Fessler and Natalie Larson", "found_city": "Northampton", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.3251 N", "found_GPS_long": "72.6412 W", "found_year": 2015, "p_institution": { "institution_code": "SMTH", "institution_name": "Smith College", "institution_logo": "https://phagesdb.org/media/institutions/smith_logo200x122.jpg", "institution_url": "http://www.smith.edu/", "institution_city": "Northampton", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.318362", "institution_longitude": "-72.63729" }, "enriched_sample": true, "discovery_notes": "79° F, 41% humidity\r\nSample collected from 3 cm deep, moist soil\r\nSuburban proximity to buildings, 30 ft from foot traffic and road, flat surface downhill from road, near Mill River, under bush\r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A4" }, "morphotype": "SIPHO", "plaque_notes": "Small, clear plaques. ", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2016-03-04", "seq_facility": { "short_name": "SMITH", "facility_name": "Smith College", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 483, "finishing_reactions": 0, "genome_length": 51274, "gcpercent": "63.7", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGCCGGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 86, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Katalie136_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2018-12-31T22:02:57-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Katalie136.gbf", "qced_genbank_file_date": "2018-12-31T22:02:57-05:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MK359310", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Katalie136.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Katalie136.dnam5", "date_added": "2015-12-09T09:14:42-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Katalya", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This name is derived from my first name and is a name that I think sounds nice. ", "finder_name": "Katherine Casado", "found_city": "Northampton", "found_state": "MA", "found_country": "USA", "found_GPS_lat": "42.318889 N", "found_GPS_long": "72.638889 W", "found_year": 2013, "p_institution": { "institution_code": "SMTH", "institution_name": "Smith College", "institution_logo": "https://phagesdb.org/media/institutions/smith_logo200x122.jpg", "institution_url": "http://www.smith.edu/", "institution_city": "Northampton", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.318362", "institution_longitude": "-72.63729" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": { "short_name": "SMITH", "facility_name": "Smith College", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-12-06T15:52:50-05:00", "date_modified": "2020-09-17T14:06:01-04:00" }, { "phage_name": "Katamari", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Deborah Firestone", "found_city": "Baltimore", "found_state": "MD", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2010, "p_institution": { "institution_code": "UMBC", "institution_name": "University of Maryland, Baltimore County", "institution_logo": "https://phagesdb.org/media/institutions/UMBC_Logo.png", "institution_url": "http://www.umbc.edu/", "institution_city": "Baltimore", "institution_state": "MD", "institution_country": "USA", "institution_latitude": "39.256328", "institution_longitude": "-76.71072" }, "enriched_sample": null, "discovery_notes": "Loose, dry, mulchy soil\r\n<1\" depth\r\n89 degrees Fahrenheit\r\nFound under a large tree", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "1-2 mm\r\nTurbid or haloed", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Katamari_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Katamari_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Katamari_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Katamari_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2010-11-29T16:55:50-05:00", "date_modified": "2020-07-16T13:07:41-04:00" }, { "phage_name": "Katan0530", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Vishan Ramanathan", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.444253 N", "found_GPS_long": "79.953239 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "The soil was collected at 7:30 pm while the sun was setting and there was a little bit of a breeze. It was around 60 degrees. The soil was a bit hard and stiff and had a little bit of greens in it. (Transport time was 12 minutes to the fridge. Spent 19 hours in the fridge) The towering cathedral of learning stood in front of the soil with other small flowers (pink and purple) were situated around the soil. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques of Katan0530 produced plaques that were on the smaller side. These plaques are well spaced on the plate and are not competing extensively with one another. Furthermore these plaques are clear at least most of them are suggesting that the phage is a virulent one and complete the lytic cycle rather than the lysogenic one. ", "lysogeny_notes": "Clear plaques suggest a virulent phage. ", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Katan0530_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Katan0530_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Katan0530_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Katan0530_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Katan0530_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-10-04T11:45:22-04:00", "date_modified": "2020-09-17T14:08:36-04:00" }, { "phage_name": "Katara", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Ramya Palaniappan and Subada Soti", "found_city": "Boulder", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "40.003 N", "found_GPS_long": "105.261 W", "found_year": 2012, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "9/09/12 Taken from the soil next to fenced off Kittredge Pond", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "1st web pattern -> semi-turbid plaques\r\n2nd Web patter -> clear plaques 0.5-1mm\r\nincubation temp: 37C\r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", 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"https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We choose this name as we thought it was a unique name that came to mind.", "finder_name": "Alex Grant & Ashley Herrera", "found_city": "Kenosha", "found_state": "WI", "found_country": "United States", "found_GPS_lat": "42.67744 N", "found_GPS_long": "87.820628 W", "found_year": 2021, "p_institution": { "institution_code": "CRTH", "institution_name": "Carthage College", "institution_logo": "https://phagesdb.org/media/institutions/Carthage-vert-2c.png", "institution_url": "http://www.carthage.edu/", "institution_city": "Kenosha", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "42.624596", "institution_longitude": "-87.81996" }, "enriched_sample": false, "discovery_notes": "Grassy area", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-11T10:34:11-05:00", "date_modified": "2022-03-16T11:02:03-04:00" }, { "phage_name": "KatAttack", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education 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It was under pine trees, in the shade, and in dirt mixed with fertilizer", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A1" }, "morphotype": "SIPHO", "plaque_notes": "The plaques formed were circular and had size multiple size morphology: between 1 and 2 mm in diameter following 48 hours of incubation at 37° C, they were extremely clear and could be seen through with ease.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KatAttack_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KatAttack_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/KatAttack_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KatAttack_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KatAttack_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-11-10T06:23:50-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "KatChan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Katherine Vignona and Channing Prins", "found_city": "Plattsburgh", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "44.72126 N", "found_GPS_long": "73.673595 W", "found_year": 2020, "p_institution": { "institution_code": "SNYP", "institution_name": "State University of New York-Plattsburgh", "institution_logo": "https://phagesdb.org/media/institutions/PlattsburghSeal.png", "institution_url": "", "institution_city": "Plattsburgh", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 18, "growth_notes": "", "pcluster": { "cluster": "EA", "temperate": false }, "psubcluster": { "subcluster": "EA6" }, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-01-05", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 748, "finishing_reactions": 0, "genome_length": 40349, "gcpercent": "63.0", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 63, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KatChan_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KatChan_Minimal_Final_7dXaOEm.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/KatChan_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/KatChan_CoverSheet.pdf", "submitted_annotation_date": "2021-08-10T21:56:42-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KatChan_flat.txt", "qced_genbank_file_date": "2021-08-10T21:56:42-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MZ820084", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KatChan.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2020-11-17T14:38:15-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "KatCoop", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Partner's name was Cooper, mixed our first names.", "finder_name": "Katie Chan", "found_city": "West Lafayette", "found_state": "IN", "found_country": "United States", "found_GPS_lat": "40.42627 N", "found_GPS_long": "86.92099 W", "found_year": 2022, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": null, "discovery_notes": "Sunny, 78°F, next to sidewalk, in large median flower pot in a cul-de-sac outside of Windsor Residence hall Wood building.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-16T09:24:00-05:00", "date_modified": "2024-02-25T15:28:00-05:00" }, { "phage_name": "Kate", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "This phage was named after Kate Austen, the most important member of the Oceanic Six.", "finder_name": "Emily Kukan", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.445369 N", "found_GPS_long": "79.9526274 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "EF", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "Kate makes extremely small, clear plaques.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-08-19", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 235, "finishing_reactions": 0, "genome_length": 56618, "gcpercent": "63.8", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 83, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kate_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2022-05-26T14:08:38-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kate_flat.txt", "qced_genbank_file_date": "2022-05-26T14:08:38-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "ON637767", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kate_plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kate.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kate_plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-07-31T08:18:48-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kate33", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after myself and my softball number.", "finder_name": "Kate Kralik", "found_city": "Orange city", "found_state": "IA", "found_country": "Sioux county", "found_GPS_lat": "43.00004 N", "found_GPS_long": "96.06051 W", "found_year": 2023, "p_institution": { "institution_code": "NWRC", "institution_name": "Northwestern College", "institution_logo": "https://phagesdb.org/media/institutions/NorthwesternCollege_WeS7TIe.jpg", "institution_url": "http://www.nwciowa.edu/", "institution_city": "Orange City", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.997964", "institution_longitude": "-96.05829" }, "enriched_sample": true, "discovery_notes": "Found in top layer of soil on campus.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "EB", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": ".5-1mm plaques. Some clear and some with cloudy rings.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2024-08-29", "seq_facility": { "short_name": "NWCIOWA", "facility_name": "Northwestern College of Iowa", "contact_person": "", "shipping_address": "", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1028, "finishing_reactions": 0, "genome_length": 41688, "gcpercent": "66.2", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "ACTCCCGACA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 71, "num_tRNAs": 1, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kate33_Plaque.jpeg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kate33.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-10-19T11:32:01-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Katedra", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name \"Katedra\" is polish for cathedral. I got my soil sample that contained phage Katedra from outside of the Cathedral of Learning at the University of Pittsburgh", "finder_name": "Abigail Orzechowski", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.443741 N", "found_GPS_long": "79.953109 W", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "The sample was taken on 1/9/17 outside of the University of Pittsburgh's Cathedral of Learning in a bed of dirt sourounding a large tree. The temperature was 28 degrees F. The soil was very dry and dusty. ", "isolation_temperature": -2, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Katedra presents in 2 different morphologies. Very small, turbid plaques are the main plaques, while other larger, more clear plaques are scattered throughout. I have performed numerous plaque purifications to be certain there is only one plaque present in my sample. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Katedra_Plaque_Lxyqjgd.png", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Katedra_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Katedra_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-02-19T07:54:01-05:00", "date_modified": "2020-09-17T14:08:31-04:00" }, { "phage_name": "Katel", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Meaning killer in Arabic", "finder_name": "Laila Zemar", "found_city": "Duluth", "found_state": "MN", "found_country": "United States", "found_GPS_lat": "46.876 N", "found_GPS_long": "91.94 W", "found_year": 2022, "p_institution": { "institution_code": "CSSC", "institution_name": "College of St. Scholastica", "institution_logo": "https://phagesdb.org/media/institutions/CSSlogo14.jpg", "institution_url": "http://www.css.edu/", "institution_city": "Duluth", "institution_state": "MN", "institution_country": "USA", "institution_latitude": "46.818302", "institution_longitude": "-92.10086" }, "enriched_sample": true, "discovery_notes": "Enriched from soil from a duck pond", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small turbid plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Katel_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Katel_EMPic_4vEukfh.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Laila2.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/266DFBC2-2FC1-4265-B73B-12BB0998A70D_4_5005_c.jpeg", "dnam_file": null, "date_added": "2022-11-11T09:07:02-05:00", "date_modified": "2024-02-25T15:27:59-05:00" }, { "phage_name": "Katess", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "A blend of the names of the phage hunters that isolated the phage.", "finder_name": "Stella Brittingham", "found_city": "Easton", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "40.698 N", "found_GPS_long": "75.206 W", "found_year": 2025, "p_institution": { "institution_code": "LAFA", "institution_name": "Lafayette College", "institution_logo": "https://phagesdb.org/media/institutions/Lafayette.png", "institution_url": "http://www.lafayette.edu/", "institution_city": "Easton", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "40.698482", "institution_longitude": "-75.20955" }, "enriched_sample": false, "discovery_notes": "Mulched flower bed; frost in soil", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2025-03-31T12:56:48-04:00", "date_modified": "2025-03-31T12:56:48-04:00" }, { "phage_name": "Kath130", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My phage's name originated from the name of my grandmother and the year she was born.", "finder_name": "Emma Heinert", "found_city": "River Falls", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "44.852583 N", "found_GPS_long": "92.628417 W", "found_year": 2021, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "My phage was taken from soil near parking lot E on the UWRF campus. The soil was taken 7 inches deep on the cool morning of 9/13/21 when it was 63 degrees out. The soil sample was taken from an area of sandy, dry soil, with a few trees and bushes nearby. It was originally collected by Brea and she was kind enough to adopt out her phage to me.", "isolation_temperature": 29, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "My phages have been consistently uniform. They have been cloudy with halos and are about .25mm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kath130_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Kath130_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kath130_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-10-11T13:20:26-04:00", "date_modified": "2022-03-16T11:02:17-04:00" }, { "phage_name": "Katharina", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The origin of my phage name is that it is my first name.", "finder_name": "Katharina Klinkhammer", "found_city": "Hudson", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "44.984444 N", "found_GPS_long": "92.754444 W", "found_year": 2015, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "I found it at a compost pile that included kitchen scraps and yard waste. The soil was semi moist with small pieces of leaves and other debris. It was a sunny day with no wind and low humidity. My phage is very likely to be similar to Strosahl.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Large and small plaques that were clear.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Katharina_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Katharina_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Katharina_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Katharina_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2015-11-23T14:42:47-05:00", "date_modified": "2020-09-17T14:06:37-04:00" }, { "phage_name": "Katherine", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Katherine is my girlfriend who has always supported me and i owe so much to her. ", "finder_name": "Jimmy Kaczor", "found_city": "River Falls", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "44.804167 N", "found_GPS_long": "42.543333 W", "found_year": 2013, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "is similar to Klycomp and Seume\r\n9-19-13 7:15 am\r\nRavine south of riverfalls in yard compost site.\r\nsoil was moist and partially degraded plant matter. 40 mm depth where sampled.\r\n62 F cloudy and humid\r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "3mm total size\r\n1mm clear spot with 1mm turbid halo surrounding\r\n", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "sp. ", "strain_name": "ATCC 21022", "strain_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "21022", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 8, "genus": "Arthrobacter", "species_name": "sp. ", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Katherine_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Katherine_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Katherine_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Katherine_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Katherine_EMPic_Thumb.png", "dnam_file": null, "date_added": "2013-12-05T21:18:29-05:00", "date_modified": "2024-02-25T15:27:48-05:00" }, { "phage_name": "KatherineG", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Anna Green", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.446910 N", "found_GPS_long": "79.954301 W", "found_year": 2012, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "A", "temperate": true }, "psubcluster": { "subcluster": "A15" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2014-10-08", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "IONTORRENT", "method_name": "Ion Torrent" }, "coverage": 3456, "finishing_reactions": 12, "genome_length": 52689, "gcpercent": "61.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "Terminating Sanger reads confirmed buildup of reads seen in Ion Torrent data.", "overhang_length": 10, "overhang_sequence": "CGGGTGGTTA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 98, "num_tRNAs": 3, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KU998251", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/KatherineG_1b.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KatherineG.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/KatherineG_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/KatherineG.dnam5", "date_added": "2015-04-28T16:43:06-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kathleen", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Katie Schaible", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "United States", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2022, "p_institution": { "institution_code": "CHAT", "institution_name": "Chatham University", "institution_logo": "https://phagesdb.org/media/institutions/chatham_logo_NB0QvGQ.png", "institution_url": "https://www.chatham.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.449259", "institution_longitude": "-79.925094" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-11T09:09:47-05:00", "date_modified": "2022-11-11T09:09:47-05:00" }, { "phage_name": "Kathmandu", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is the name of my cat I rescued from a shelter.", "finder_name": "Kelsey Glover", "found_city": "Charleston", "found_state": "SC", "found_country": "USA", "found_GPS_lat": "32.77 N", "found_GPS_long": "79.96 W", "found_year": 2018, "p_institution": { "institution_code": "CCHA", "institution_name": "College of Charleston", "institution_logo": "https://phagesdb.org/media/institutions/cofc_logo_red.jpg", "institution_url": "http://www.cofc.edu/", "institution_city": "Charleston", "institution_state": "SC", "institution_country": "USA", "institution_latitude": "32.783974", "institution_longitude": "-79.93820" }, "enriched_sample": false, "discovery_notes": "It was discovered outside of the 35 Folly Road Blvd Apartment Complex. It was found in a cleared field that is used as a dog park. It is an area that is exposed to sun for a majority of the day (no trees or shade nearby).", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Clear", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-11-20T08:40:36-05:00", "date_modified": "2018-12-05T11:58:01-05:00" }, { "phage_name": "Kathoria", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Isaac Bailey", "found_city": "West Lafayette", "found_state": "IN", "found_country": "United States", "found_GPS_lat": "40.425105 N", "found_GPS_long": "86.918858 W", "found_year": 2024, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": false, "discovery_notes": "Sample was collected in my room. It was collected in my pot of soil with my dieffimbachea plant. The temperature was 70 degrees. The time was 10:30 on Thursday Sept 5. The soil was moist. The coordinates are 40.4251052, -86.9188577", "isolation_temperature": 28, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "B-2979", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-10-01T08:47:45-04:00", "date_modified": "2025-04-04T11:37:46-04:00" }, { "phage_name": "Katicia", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from a random name generator.", "finder_name": "Akash, Affan, Faaraz, Nathan", "found_city": "Amherst", "found_state": "MA", "found_country": "United States", "found_GPS_lat": "42.390547 N", "found_GPS_long": "72.522568 W", "found_year": 2023, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "There are multiple buildings around this area.", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques were around 3mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/katicia_plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/katicia_empic_thumb.png", "dnam_file": null, "date_added": "2023-04-07T08:34:23-04:00", "date_modified": "2024-10-03T12:08:25-04:00" }, { "phage_name": "Katie", "old_names": "Juuul", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the SI unit of work/ energy", "finder_name": "Zachary Gulgule", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "DRXL", "institution_name": "Drexel University", "institution_logo": "https://phagesdb.org/media/institutions/logo-drexel.jpg", "institution_url": "http://drexel.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Found by a tree, under mulch, soil was wet, worms present, about 2 inches of depth, 80 degrees Fahrenheit, collected on October 5th, 2017 at 12:46 pm est", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques were about .5 mm in diameter, cloudy, almost perfectly round", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-12-04T23:27:29-05:00", "date_modified": "2020-09-17T14:08:48-04:00" }, { "phage_name": "Katiebear", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage was named after my Roommate. ", "finder_name": "Meghan Carlton", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2015, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "This phage was isolated on September 17th from a flower bed outside of Lichfield Tower C on the Campus of the University of Pittsburgh. The soil was dry.", "isolation_temperature": 24, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The phage forms plagues that vary in size from 1mm to 2mm in diameter. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2015-10-12T07:35:58-04:00", "date_modified": "2017-09-28T16:41:24-04:00" }, { "phage_name": "Katiebelle", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Katiebelle is named after Katie Dreher and AlleaBelle Gongola.", "finder_name": "Katie Dreher and AlleaBelle Gongola", "found_city": "Little Rock", "found_state": "AR", "found_country": "USA", "found_GPS_lat": "34.82175 N", "found_GPS_long": "92.531722 E", "found_year": 2014, "p_institution": { "institution_code": "OUBU", "institution_name": "Ouachita Baptist University", "institution_logo": "https://phagesdb.org/media/institutions/ouachita-baptist-university.jpg", "institution_url": "http://www.obu.edu/", "institution_city": "Arkadelphia", "institution_state": "AR", "institution_country": "USA", "institution_latitude": "34.125830", "institution_longitude": "-93.05277" }, "enriched_sample": true, "discovery_notes": "Discoverd in a raised tomato garden in rural Little Rock, AR at 2.54 cm depth. 33 degrees F air temperature. 5 feet from tomatoes, 50 feet from an oak tree, and 5 feet from a wooden fence.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Plaques created are typically about 2mm in diameter, cloudy, with fuzzy edges.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Katiebelle_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Katiebelle_EMPic.jpeg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Katiebelle_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2014-11-24T16:24:38-05:00", "date_modified": "2020-09-17T14:05:41-04:00" }, { "phage_name": "KatieKen", "old_names": "Katedy", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the two students who purified it.", "finder_name": "Katie Davis and Kennedy Freitas", "found_city": "", "found_state": "", "found_country": "USA", "found_GPS_lat": "38.41557 N", "found_GPS_long": "85.78267 W", "found_year": 2022, "p_institution": { "institution_code": "IUSE", "institution_name": "Indiana University-Southeast", "institution_logo": "https://phagesdb.org/media/institutions/IUS.2line.V_WEB.png", "institution_url": "http://www.ius.edu/", "institution_city": "New Albany", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "Soil was dry, and it was early in the morning around 7:45 am. This phage was adopted from Bryce Kunard.", "isolation_temperature": 26, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Katedy_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Katedy_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KatieKen_Plaque_Thumb.jpeg", "em_thumb_file": "https://phagesdb.org/media/emPics/KatieKen_EMPic_Thumb.jpeg", "dnam_file": null, "date_added": "2022-12-15T11:22:07-05:00", "date_modified": "2024-02-25T15:27:59-05:00" }, { "phage_name": "KatieWard", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Patrick K Huynh", "found_city": "Santa Cruz", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "36.998944 N", "found_GPS_long": "122.052626 W", "found_year": 2011, "p_institution": { "institution_code": "UCSC", "institution_name": "University of California, Santa Cruz", "institution_logo": "https://phagesdb.org/media/institutions/UCSC.jpg", "institution_url": "http://www.ucsc.edu/", "institution_city": "Santa Cruz", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "36.991665", "institution_longitude": "-122.0608" }, "enriched_sample": true, "discovery_notes": "The collected soil was from the compost piles at the Merrill Compost Garden. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Purification 1: clear plaques between 3mm and 3.5mm in diameter\r\n\r\nPurification 2: clear plaques between 1mm and 1.5mm in diameter.\r\n\r\nPurification 3: clear plaques between 1mm and 1.5mm in diameter.\r\n\r\nPurification 4: clear plaques between 1mm and 2mm in diameter.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KatieWard_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/KatieWard_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KatieWard_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2011-11-08T08:00:40-05:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Katiny", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My last name is Katoni and I am short for my age so I decided to combine the two: “Katoni” and “tiny”", "finder_name": "Emily Katoni", "found_city": "Cleveland", "found_state": "OH", "found_country": "United States", "found_GPS_lat": "41.505 N", "found_GPS_long": "81.6061 W", "found_year": 2022, "p_institution": { "institution_code": "CWRU", "institution_name": "Case Western Reserve University", "institution_logo": "https://phagesdb.org/media/institutions/cwru_logo_1AJYR9L.jpg", "institution_url": "https://www.case.edu/", "institution_city": "Cleveland", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "small clear plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "CAG3", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isoniazid-resistant mutant of G terrae 3612" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Katiny_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-12-12T10:05:22-05:00", "date_modified": "2024-02-25T15:27:59-05:00" }, { "phage_name": "Katnip", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name I chose came from the Hunger Games. Katnisss Everdeen's nickname was Katnip. The reason why I chose this name is because I am a huge fan of the Hunger Games and my friends refer to me as Katniss. I wanted to choose a name that related to me.", "finder_name": "Vicki Remley", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.441389 N", "found_GPS_long": "79.955278 W", "found_year": 2016, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "The soil sample was collected in a flower bed near Posvar Hall at the University of Pittsburgh. The soil was moist and there was numerous shrubs and flowering plants in the flowerbed. There was enough plant life that it was an ideal area for bacterial and bacteriophage growth. The discovery came from a direct isolation of the soil. ", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaque that I chose was large, oval shaped, cloudy, and had a hazed ring around it. ", "lysogeny_notes": "My phage is a temperate phage. ", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Katnip_Plaque.JPG", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Katnip_Digest_Lq4Cb9g.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Katnip_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2016-09-29T18:27:12-04:00", "date_modified": "2020-09-17T14:07:43-04:00" }, { "phage_name": "Katniss", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Kristen McGreevy", "found_city": "Allison Park", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.587013 N", "found_GPS_long": "79.906963 W", "found_year": 2011, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "It was from under a manure pile along with some horse manure in the sample. The weather was wet from rain, and no sun that day, but on normal conditions, it has full sun all day. The temperature was moderate, around 65 degrees Fahrenheit.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B1" }, "morphotype": "SIPHO", "plaque_notes": "No halo, moderate size variation, and not turbid", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2021-01-04", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 517, "finishing_reactions": 0, "genome_length": 68447, "gcpercent": "66.5", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 104, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Katniss_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2021-07-13T09:10:12-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Katniss_flat_2.txt", "qced_genbank_file_date": "2021-07-13T09:10:12-04:00", "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MZ622173", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Katniss_Plaque.pdf", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Katniss.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Katniss_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2011-11-21T09:38:35-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Katra", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We combined our names, Katie and Ciara.", "finder_name": "Ciara McGlynn and Katie Moore", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667017 N", "found_GPS_long": "117.402789 W", "found_year": 2013, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "We obtained our sample of enriched soil from a flower bed at 10:05 on September 3, 2013 outside of Hughes Hall at Gonzaga University. The soil depth was 1 inch and the moisture of the soil was damp.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The plaques are 1-2 mm in width, turbid and round with defined edges.\r\n\r\nGrows at 25 degrees C", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Katra_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Katra_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Katra_Plaque_Thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/Katra_EMPic_Thumb.png", "dnam_file": "https://phagesdb.org/media/dnam/gel.jpg", "date_added": "2013-11-12T15:42:23-05:00", "date_modified": "2020-09-17T14:05:34-04:00" }, { "phage_name": "Katreena", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The \"tree\" in Katreena was inspired by the tree site that the phage was isolated from. The name Katrina contains the same sound as tree, therefore we were able to substitute the word into the name.", "finder_name": "Gabriel Selden, Bella Cortez", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.668454 N", "found_GPS_long": "117.401667 W", "found_year": 2022, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The sample was collected on a warm summer afternoon from a dirt patch, which was located around a tree on a grassy lawn. The soil was dry with little organic matter, and only a few pieces of dead grass were present.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The size of the plaques are primarily larger in size with thick, defined halos. The plaques are uniform in shape, containing no apparent bumps or slants. The plaques themselves are clear, rather than turbid.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Katreena_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Katreena_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Katreena_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Katreena_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Katreena_EMPic_Thumb.png", "dnam_file": null, "date_added": "2022-11-09T08:55:03-05:00", "date_modified": "2024-02-25T15:28:09-05:00" }, { "phage_name": "KatsCat", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Discoverer likes cats", "finder_name": "Katelyn Shen", "found_city": "Cleveland", "found_state": "OH", "found_country": "United States", "found_GPS_lat": "41.505 N", "found_GPS_long": "81.603056 W", "found_year": 2024, "p_institution": { "institution_code": "CWRU", "institution_name": "Case Western Reserve University", "institution_logo": "https://phagesdb.org/media/institutions/cwru_logo_1AJYR9L.jpg", "institution_url": "https://www.case.edu/", "institution_city": "Cleveland", "institution_state": "OH", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "clear plaques of both small and large sizes", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-10T13:23:16-05:00", "date_modified": "2025-04-04T11:37:43-04:00" }, { "phage_name": "KatSinclair", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Adrienne Rinella", "found_city": "Harrisonburg", "found_state": "VA", "found_country": "USA", "found_GPS_lat": "38.4330 N", "found_GPS_long": "78.8599 W", "found_year": 2008, "p_institution": { "institution_code": "JAMU", "institution_name": "James Madison University", "institution_logo": "https://phagesdb.org/media/institutions/james_madisonp.png", "institution_url": "http://www.jmu.edu/", "institution_city": "Harrisonburg", "institution_state": "VA", "institution_country": "USA", "institution_latitude": "38.435340", "institution_longitude": "-78.86975" }, "enriched_sample": true, "discovery_notes": "From moist surface soil next to the sidewalk, west side of Festival dining hall on JMU campus. 28°\r\n\r\nIsolated from same enrichment as NYX, Rain, RLA, MyPolly", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "3mm/circular clear plaques/48/37°C", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/katsinclair_plaque.png", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/katsinclair_digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/katsinclair_plaque_thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2010-04-30T20:00:00-04:00", "date_modified": "2017-09-12T10:21:57-04:00" }, { "phage_name": "Kattail", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Sabrina Jen", "found_city": "Los Angeles", "found_state": "CA", "found_country": "USA", "found_GPS_lat": "33.969 N", "found_GPS_long": "118.417 W", "found_year": 2010, "p_institution": { "institution_code": "LOMA", "institution_name": "Loyola Marymount University", "institution_logo": "https://phagesdb.org/media/institutions/Loyola_Marymount.jpg", "institution_url": "http://www.lmu.edu/", "institution_city": "Los Angeles", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "33.970679", "institution_longitude": "-118.4174" }, "enriched_sample": true, "discovery_notes": "2 inches deep soil; mid-60°F; moist soil with rose bushes and cattails in front of the COM building", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "1.5mm clear plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kattail_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kattail_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kattail_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kattail_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2011-01-25T05:46:40-05:00", "date_modified": "2017-09-20T13:27:39-04:00" }, { "phage_name": "Kattrod", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We combined our last names together to form the name for this phage to show the shared work in discovering this phage.", "finder_name": "Sonja Katt and Marina Rodriguez", "found_city": "Kenosha", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "CRTH", "institution_name": "Carthage College", "institution_logo": "https://phagesdb.org/media/institutions/Carthage-vert-2c.png", "institution_url": "http://www.carthage.edu/", "institution_city": "Kenosha", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "42.624596", "institution_longitude": "-87.81996" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Phage is about 0.05 cm in diameter. Very circular in shape and smooth margins. Clear in color.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kattrod_Plaque_FIuq2lU.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kattrod_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-10-30T22:47:14-04:00", "date_modified": "2020-09-17T14:09:11-04:00" }, { "phage_name": "KatX", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "To name the phage I used the nickname everyone calls me and the first letter to my last name. ", "finder_name": "Kathy Xavier", "found_city": "Pittsburgh", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2017, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": false, "discovery_notes": "Weather Conditions at the time of collection (about 4:17pm): Mostly cloudy with 7 mph wind, temperature was around 62oF, humidity 57%. During the day: Partly cloudy with a high of 38o F and a low of 32o F, light winds and sunny at times\r\nSurrounding vegetation included straw pieces, grass, twigs, and rocks.\r\nSoil was transported approximately 30 minutes at room temperature before storing in a refrigerator for 18 hours, then was transported for approximately 3 hours in my backpack at room temperature; moist consistency contained some grass and straw pieces", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "The plaques created by KatX are pinpoint, cloudy plaques that are a circular in size with a diameter less than 1mm.\r\n", "lysogeny_notes": "While lysogen testing has not been performed yet, the morphology of the plaque suggests the phage is lysogenic. Also, no plaques were found initially in the spot tittering. I hypothesized that this may be due to the great amount of lysogen being produced by the phage. In order to test this, I added 150 uL less of host cell to the spot titer. By using less host cells, the stationary phase will be prolonged and the phages will be able to infect the host cells for a longer time and not produce as many lysogens. This proved as a success and plaques were found. It also is further cause to believe the phage exhibits lysogenic characteristics. ", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KatX_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/KatX_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/KatX_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KatX_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KatX_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-02-08T06:14:04-05:00", "date_modified": "2020-09-17T14:08:31-04:00" }, { "phage_name": "Katy131", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The phage was named after Barbara Streisand's character in the movie \"The Way We Were.\" She was a very complicated character, as was this phage. ", "finder_name": "Tiara Cochran", "found_city": "Liberty", "found_state": "KY", "found_country": "USA", "found_GPS_lat": "37.412 N", "found_GPS_long": "84.989 W", "found_year": 2015, "p_institution": { "institution_code": "WEKU", "institution_name": "Western Kentucky University", "institution_logo": "https://phagesdb.org/media/institutions/wkucuptallrb.jpg", "institution_url": "http://www.wku.edu/", "institution_city": "Bowling Green", "institution_state": "KY", "institution_country": "USA", "institution_latitude": "36.985737", "institution_longitude": "-86.45552" }, "enriched_sample": true, "discovery_notes": "The purification process was very tedious because I believed each sample was impure. It wasn't until multiple rounds of purifications were performed that we explored the possibility of clear plaque mutants. This was verified by streaking each plaque onto separate plates. ", "isolation_temperature": 30, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Plaques present as turbid but produce clear mutants the longer the plates are incubated. The turbid plaques are 1mm in diameter and the clear plaque mutants are 1.5mm in diameter. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Katy131_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/Katy131_EMPic.TIF", "digest_file": "https://phagesdb.org/media/digestPics/Katy131_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Katy131_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Katy131_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2015-11-10T15:02:32-05:00", "date_modified": "2020-09-17T14:06:49-04:00" }, { "phage_name": "Katya", "old_names": "Fritsch", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Amanda Fritsch", "found_city": "Philadelphia", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.086167 N", "found_GPS_long": "74.9778 W", "found_year": 2017, "p_institution": { "institution_code": "USPH", "institution_name": "University of the Sciences (now St. Joseph's Univ)", "institution_logo": "https://phagesdb.org/media/institutions/USciences.png", "institution_url": "https://www.sju.edu/", "institution_city": "Philadelphia", "institution_state": "PA", "institution_country": "United States", "institution_latitude": "39.947118", "institution_longitude": "-75.20724" }, "enriched_sample": true, "discovery_notes": "Urban area\r\n\r\nTaken from approximately 6 in, or 15.2 cm, from side of house\r\n\r\nTaken from bottom of hill\r\n\r\nLow foot traffic area\r\n\r\nCluster identified following DOGEMS via PCR with cluster-specific primers.", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "F", "temperate": true }, "psubcluster": { "subcluster": "F1" }, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Fritsch_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Fritsch_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Fritsch_Digest.jpg", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Fritsch_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Fritsch_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2017-11-09T08:25:25-05:00", "date_modified": "2020-09-17T14:08:00-04:00" }, { "phage_name": "Katyusha", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "My moms name is Katerina and she is a biologist. My family is Russian so Katya is short for Katerina and Katyusha is the familiar of Katya. I thought my mom would be happy that my first step in the field of biology would be in her honor.", "finder_name": "Philipp Koman", "found_city": "Oakland", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "40.442674 N", "found_GPS_long": "79.957008 W", "found_year": 2015, "p_institution": { "institution_code": "PITT", "institution_name": "University of Pittsburgh", "institution_logo": "https://phagesdb.org/media/institutions/Pitt1.gif", "institution_url": "http://www.pitt.edu/", "institution_city": "Pittsburgh", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "40.446981", "institution_longitude": "-79.95414" }, "enriched_sample": null, "discovery_notes": "Found in soil outside of Litchfield Towers Residence Halls at the University of Pittsburgh in a flower bed. Soil was kept in a plastic Zip-Lock bag for 20 minutes prior to being used for a direct plate. Soil was moist, fluffy, and fertile. Weather was warm (20-24 degrees Celsius) and humid.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "CS", "temperate": false }, "psubcluster": { "subcluster": "CS4" }, "morphotype": "", "plaque_notes": "Plaques were quite numerous and very small, about 1mm diameter. Sizes ranged from about .5mm to 1.5mm. Some contamination was present on the plate, but not enough to make the plate unusable.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2015-11-16", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1419, "finishing_reactions": 0, "genome_length": 75380, "gcpercent": "59.5", "end_type": "TREP", "repeat_length": 1172, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 99, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "3612", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "25594", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": null, "in_genbank": true, "genbank_accession": "KU963258", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Katyusha_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Katyusha.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Katyusha_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": "https://phagesdb.org/media/dnam/Katyusha_gb.dnam5", "date_added": "2015-10-12T07:27:33-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Katzastrophic", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Emily Katz", "found_city": "SAINT LEO", "found_state": "FL", "found_country": "USA", "found_GPS_lat": "28.335843 N", "found_GPS_long": "82.256493 W", "found_year": 2018, "p_institution": { "institution_code": "SLEO", "institution_name": "Saint Leo University", "institution_logo": "https://phagesdb.org/media/institutions/SLEO.png", "institution_url": "http://www.saintleo.edu/", "institution_city": "Saint Leo", "institution_state": "FL", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "The sample was surrounded by grass and in a shady area. The soil was moist and grainy.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "EB", "temperate": false }, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-08-05", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 1114, "finishing_reactions": 0, "genome_length": 41712, "gcpercent": "67.9", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "ACTCCCGGCA", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 65, "num_tRNAs": 2, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Katzastrophic_CompleteNotes.dnam5", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Katzastrophic_Minimal_Final_iI3dKhJ.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/Katzastrophic_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/Katzastrophic_CoverSheet.pdf", "submitted_annotation_date": "2021-11-23T08:46:26-05:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Katzastrophic_flat.txt", "qced_genbank_file_date": "2021-11-23T08:46:26-05:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "OL742562", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Katzastrophic_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Katzastrophic.fasta", "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Katzastrophic_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2018-12-09T08:41:32-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "KatzDogz", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "CatDog was a TV show that both my partner and I liked as children. Both of our last names have Katz in them, so KatzDogz is a fun play on a great TV show and our last names.", "finder_name": "Joshua Katz, Ian Katzman", "found_city": "St. Louis", "found_state": "MO", "found_country": "USA", "found_GPS_lat": "38.047318 N", "found_GPS_long": "90.300343 E", "found_year": 2016, "p_institution": { "institution_code": "WUSL", "institution_name": "Washington University in St. Louis", "institution_logo": "https://phagesdb.org/media/institutions/WashU2_.jpg", "institution_url": "http://www.wustl.edu/", "institution_city": "St. Louis", "institution_state": "MO", "institution_country": "USA", "institution_latitude": "38.649087", "institution_longitude": "-90.31083" }, "enriched_sample": true, "discovery_notes": "Dirt was dug with shovel until 6 cm deep then scooped into a test tube. Temperature was 83 degrees Fahrenheit. Soil was found near a fire hydrant and was clay-like.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Near a fire hydrant at Forest Park in St. Louis, MO.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "viridochromogenes", "strain_name": "DSM40736", "strain_species": { "id": 39, "genus": "Streptomyces", "species_name": "viridochromogenes", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 39, "genus": "Streptomyces", "species_name": "viridochromogenes", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KatzDogz_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/KatzDogz_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/KatzDogz_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KatzDogz_Plaque_Thumb.jpeg", "em_thumb_file": "https://phagesdb.org/media/emPics/KatzDogz_EMPic_Thumb.jpeg", "dnam_file": null, "date_added": "2016-10-12T08:58:08-04:00", "date_modified": "2020-08-03T17:02:18-04:00" }, { "phage_name": "Katze", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Nick Peters", "found_city": "Ames", "found_state": "IA", "found_country": "United States of America", "found_GPS_lat": "", "found_GPS_long": "", "found_year": 2022, "p_institution": { "institution_code": "IASU", "institution_name": "Iowa State University", "institution_logo": "https://phagesdb.org/media/institutions/IowaStateUniversity.png", "institution_url": "https://www.iastate.edu/", "institution_city": "Ames", "institution_state": "IA", "institution_country": "USA", "institution_latitude": "42.026380", "institution_longitude": "-93.64653" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Katze_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/Katze_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Katze_Digest.PNG", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-28T08:35:28-05:00", "date_modified": "2024-02-25T15:27:53-05:00" }, { "phage_name": "Kauai", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Patrick Driscoll", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.66865 N", "found_GPS_long": "117.402992 W", "found_year": 2015, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kauai_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kauai_EMPic.tif", "digest_file": "https://phagesdb.org/media/digestPics/Kauai_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kauai_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kauai_EMPic_Thumb.png", "dnam_file": null, "date_added": "2015-04-22T20:21:50-04:00", "date_modified": "2020-09-17T14:06:57-04:00" }, { "phage_name": "Kauala", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my Minecraft account.", "finder_name": "Heidi Lin", "found_city": "Rancho Cucamonga", "found_state": "CA", "found_country": "United States of America", "found_GPS_lat": "34.118822 N", "found_GPS_long": "117.526808 W", "found_year": 2020, "p_institution": { "institution_code": "LASI", "institution_name": "La Sierra University", "institution_logo": "https://phagesdb.org/media/institutions/LaSierra_Deah4d4.jpg", "institution_url": "https://lasierra.edu/", "institution_city": "Riverside", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "33.912017", "institution_longitude": "-117.4995" }, "enriched_sample": true, "discovery_notes": "The soil sample was not that wet as it hasn’t been watered in a while. It was gathered from a potted plant outside. The soil was a dark brown color with some plant remains from what was growing in the pot.", "isolation_temperature": 16, "growth_notes": "", "pcluster": { "cluster": "EA", "temperate": false }, "psubcluster": { "subcluster": "EA4" }, "morphotype": "SIPHO", "plaque_notes": "Lytic, medium sized, slightly cloudy edges", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2020-03-24", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 7821, "finishing_reactions": 0, "genome_length": 39378, "gcpercent": "64.4", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 56, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/Kauala_Minimal_Final.dnam5", "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": "2020-06-19T17:57:31-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/Kauala_flat.txt", "qced_genbank_file_date": "2020-06-19T17:57:31-04:00", "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "MT657344", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kauala_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kauala_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Kauala_Digest.png", "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kauala.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kauala_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kauala_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2020-03-16T12:53:02-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kaufman", "old_names": "", "program": { "short_name": "PHIRE", "program_name": "Phage Hunters Integrating Research and Education", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "William and Sheryl Peterson", "found_city": "", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "41.529078 N", "found_GPS_long": "78.932476 W", "found_year": 2012, "p_institution": { "institution_code": "HICK", "institution_name": "Hickory High School", "institution_logo": "https://phagesdb.org/media/institutions/HickoryHS.png", "institution_url": "http://www.hermitage.k12.pa.us/index.php/hickory-hs", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Small, clear plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kaufman_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KaufmanEM.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kaufman_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kaufman_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2012-09-13T04:14:51-04:00", "date_modified": "2021-01-28T11:04:08-05:00" }, { "phage_name": "Kava", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We named our phage after an Herb because my partner and I have the initials of HERB so we wanted to incorporate that into our phage name.", "finder_name": "Henry Echternkamp and Rochelle Bartley", "found_city": "Spokane", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "47.667111 N", "found_GPS_long": "117.40279 W", "found_year": 2017, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The soil was moist because of the sprinkler. We found out phage in a garden area outside of a building.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Our plaque was clear and an uneven circular shape. The plaques were in cluster so we were unable to see the individual plaques. ", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kava_Plaque.JPG", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kava_Plaque.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-09T07:32:15-05:00", "date_modified": "2020-09-17T14:09:02-04:00" }, { "phage_name": "Kavigu", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "First 2 letter of my three names", "finder_name": "Kaylee Guy", "found_city": "Greenville", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "41.432965 N", "found_GPS_long": "81.381585 W", "found_year": 2018, "p_institution": { "institution_code": "THIE", "institution_name": "Thiel College", "institution_logo": "https://phagesdb.org/media/institutions/thiel.png", "institution_url": "https://www.thiel.edu/", "institution_city": "Greenville", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "From Potted Plant in Thiel Colleges greenhouse.", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Presented Halos, low concentration in 24 hours incubation", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-04-23T12:09:17-04:00", "date_modified": "2020-09-17T14:10:42-04:00" }, { "phage_name": "Kavo", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We used the initials of each of our first names to combine them and make a name for our phage.", "finder_name": "Vani, Kylie, Amelia, Olivia", "found_city": "Amherst", "found_state": "MA", "found_country": "US", "found_GPS_lat": "42.39244 N", "found_GPS_long": "72.52527 W", "found_year": 2023, "p_institution": { "institution_code": "UMAS", "institution_name": "University of Massachusetts Amherst", "institution_logo": "https://phagesdb.org/media/institutions/UMassAmherst.png", "institution_url": "", "institution_city": "Amherst", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "This phage was found under a tree in a grassy area.", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "EA", "temperate": false }, "psubcluster": { "subcluster": "EA11" }, "morphotype": "SIPHO", "plaque_notes": "This plaque has turbid edges, bullseyes centers, and are 1mm.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2025-08-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 13142, "finishing_reactions": 0, "genome_length": 39449, "gcpercent": "64.0", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 60, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/Kavo.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/kavo_plaque_thumb.png", "em_thumb_file": "https://phagesdb.org/media/emPics/kavo_empic_thumb.png", "dnam_file": null, "date_added": "2023-04-05T08:41:54-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kavv", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after the lab partners that discovered this phage.", "finder_name": "Kyle Vogel and Ainelid Veras", "found_city": "North Andover", "found_state": "MA", "found_country": "United States of America", "found_GPS_lat": "42.666705 N", "found_GPS_long": "71.118827 W", "found_year": 2023, "p_institution": { "institution_code": "MERI", "institution_name": "Merrimack College", "institution_logo": "https://phagesdb.org/media/institutions/14169_mc_centered_rgb.png", "institution_url": "http://www.merrimack.edu/", "institution_city": "North Andover", "institution_state": "MA", "institution_country": "USA", "institution_latitude": "42.667953", "institution_longitude": "-71.12257" }, "enriched_sample": true, "discovery_notes": "All sampling had taken place about an hour and a half before isolation at approximately 10:45 in the morning. The temperature was 70°F and with air humidity at 93% due to the current rain\r\nstorms that had previously taken place. There was a slight breeze of 1 mph winds that morning and GPS coordinates (42.6670454° N, -71.1188274° W). The sample sight I was at was a small patch of dirt that was a little grassy with a good amount of moisture and mud. The soil had been distributed with my hands with blue latex gloves on. Sampling had started after just a few inches\r\nof digging using my hands. With my hands I initially dug down around 2 to 3 inches into the soil. At the time the soil had been very wet and muddy due to the current weather that had taken\r\nplace beforehand. After I had collected my sample, I had managed to put around a handful of soil into a clear plastic bag. I had carefully placed my right hand with the soil cupped in it, into\r\nthe bag that my left hand was holding open to support this action. After I had placed the soil into the plastic bag I had zipped the bag up and was ready to begin isolation and configure these\r\nbacteriophages.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "In these 3 plaques, obviously each one looks different from each other. In plaque 10-1 you can see there are many spots visible. There are roughly around a hundred of these spots scattered around the plaque in a grayish cloudy color, kind of like the color of a rain cloud. As you can see, the edges of this plaque has a very vibrant tan color surrounding it. In plaque 10-3 this plaque has maybe 30 of these little grayish rain cloudy spots scattered around it. It has noticeably less spots than plaque 10-1 as you can see but still has the vibrant tan ring along the edges. In plaque 10-5 you can see we had only 2 gray spots with the same tan ring and number 1 and 2 circles around them. That is because we will be using these for our next lab isolation.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kavv_Plaque.jpg", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-11-16T08:30:48-05:00", "date_modified": "2024-02-25T15:28:30-05:00" }, { "phage_name": "Kawaii", "old_names": "JEAT", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "JEAT was the combined initials of the discoverers. This was not accepted because there was another phage with a similar name. The name was then changed to Kawaii because it is the Japanese word for \"cute\" and the phage was found in the soil from a flowerbed in front of a Japanese restaurant.", "finder_name": "An and Juan", "found_city": "Plano", "found_state": "TX", "found_country": "USA", "found_GPS_lat": "33.066522 N", "found_GPS_long": "96.692184 W", "found_year": 2019, "p_institution": { "institution_code": "CLNC", "institution_name": "Collin College", "institution_logo": "https://phagesdb.org/media/institutions/CollinCollege_QGpldZv.jpg", "institution_url": "http://www.collin.edu/", "institution_city": "Plano", "institution_state": "TX", "institution_country": "USA", "institution_latitude": "33.218037", "institution_longitude": "-96.64176" }, "enriched_sample": false, "discovery_notes": "Found at a flowerbed in front of a Japanese restaurant. The soil was very piecey and contained many woodchips. Because it had rained prior to collection, the soil was damp, but not extremely wet because the soil was loosely packed. There was mud underneath the soil but was not included in the sample collected.", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Circular and small (1 mm diameter). Very clear plaques with no fog or haziness. Plaques were consistent in morphology with very little changes in size.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kawaii_Plaque.HEIC", "em_file": "https://phagesdb.org/media/emPics/Kawaii_EMPic.jpg", "digest_file": "https://phagesdb.org/media/digestPics/Kawaii_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": "https://phagesdb.org/media/emPics/Kawaii_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2019-04-03T16:48:48-04:00", "date_modified": "2020-06-02T18:37:17-04:00" }, { "phage_name": "Kawakatsu", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Kawakatsu means the winning river in Japanese. It was named in hopes of our phage discovery creating a \"winning\", beneficial change in our natural world, such as in our river systems.", "finder_name": "John Rio Lemkuil", "found_city": "West Lafayette", "found_state": "IN", "found_country": "United States", "found_GPS_lat": "40.4271 N", "found_GPS_long": "86.90658 W", "found_year": 2022, "p_institution": { "institution_code": "PURD", "institution_name": "Purdue University", "institution_logo": "https://phagesdb.org/media/institutions/PURDUE__.jpg", "institution_url": "http://www.purdue.edu/", "institution_city": "West Lafayette", "institution_state": "IN", "institution_country": "USA", "institution_latitude": "40.423954", "institution_longitude": "-86.92116" }, "enriched_sample": false, "discovery_notes": "Other Team Members: \r\nJoel Kuriakose\r\nChase Weinstein\r\nFrank Wang\r\n\r\nRainfall: 0” precipitation in last 24 hrs\r\nHumidity: 78%\r\n\r\nFound in the backyard of my residence and the soil seemed to be mixed with mulch.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": "https://phagesdb.org/media/emPics/Kawakatsu_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-11-16T08:38:45-05:00", "date_modified": "2024-02-25T15:28:00-05:00" }, { "phage_name": "Kawan", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Means “strong” in Korean.\r\n", "finder_name": "Niketna Vivek & Arielle Sandoval", "found_city": "Boulder", "found_state": "CO", "found_country": "USA", "found_GPS_lat": "40.002741 N", "found_GPS_long": "105.262825 W", "found_year": 2018, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": false, "discovery_notes": "Dry to moist dirt sample near a lake region.\r\n", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Temperate Phage (Bull’s eye morphology)\r\n0.35cm diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-04-19T10:08:41-04:00", "date_modified": "2020-09-17T14:10:39-04:00" }, { "phage_name": "Kawassir", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from our local soccer club in my home town in Algiers, it means raptors", "finder_name": "Ilham Mekkioui", "found_city": "Ottawa", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.329769 N", "found_GPS_long": "75.836419 W", "found_year": 2024, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": null, "discovery_notes": "Sample collected from an agricultural farm at the salad plantation area", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "NRRL B-24025", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2024-12-03T08:44:21-05:00", "date_modified": "2025-04-04T11:37:33-04:00" }, { "phage_name": "KawhiNot", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after my idol, NBA superstar Kawhi Leonard. I was inspired by a video of Kawhi eating donuts before basketball practice, because \"Ka-Why-Not?\"", "finder_name": "Abhijit Sinha", "found_city": "Ottawa", "found_state": "", "found_country": "Canada", "found_GPS_lat": "45.316648 N", "found_GPS_long": "75.60084 W", "found_year": 2024, "p_institution": { "institution_code": "UOTT", "institution_name": "University of Ottawa", "institution_logo": "https://phagesdb.org/media/institutions/uottawa.png", "institution_url": "", "institution_city": "Ottawa", "institution_state": "", "institution_country": "Canada", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "This phage was found in a soil sample from a flowerbed near Vimy Ridge Public School in Ottawa, ON.", "isolation_temperature": 20, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "Small, isolated plaques. Plaques appear to be of two different sizes, small and medium.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Arthrobacter", "species": "globiformis", "strain_name": "NRRL B-4225", "strain_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 59, "genus": "Arthrobacter", "species_name": "globiformis", "species_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "https://en.wikipedia.org/wiki/Arthrobacter_globiformis" }, "host_genus": { "id": 3, "genus_domain": "Bacteria", "genus_name": "Arthrobacter", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KawhiNot_Plaque_KdWyGRv.png", "em_file": "https://phagesdb.org/media/emPics/KawhiNot_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/KawhiNot_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KawhiNot_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KawhiNot_EMPic_Thumb_KPv4jjg.jpg", "dnam_file": null, "date_added": "2024-10-10T10:05:57-04:00", "date_modified": "2025-04-04T11:37:33-04:00" }, { "phage_name": "Kawisima", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Gamer tag", "finder_name": "Jenna Cook", "found_city": "River Falls", "found_state": "WI", "found_country": "USA", "found_GPS_lat": "44.853588 N", "found_GPS_long": "92.627328 W", "found_year": 2013, "p_institution": { "institution_code": "UWRF", "institution_name": "University of Wisconsin-River Falls", "institution_logo": "https://phagesdb.org/media/institutions/university_of_wisconsin_river_falls.png", "institution_url": "http://www.uwrf.edu/", "institution_city": "River Falls", "institution_state": "WI", "institution_country": "USA", "institution_latitude": "44.853133", "institution_longitude": "-92.62258" }, "enriched_sample": true, "discovery_notes": "Outside May Hall on River Falls campus\r\nPCR results suggest it may be in cluster N", "isolation_temperature": 37, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "small morphology, possible halo", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kawisima_Plaque.tif", "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kawisima_Plaque_Thumb.jpg", "em_thumb_file": null, "dnam_file": null, "date_added": "2013-12-06T15:43:46-05:00", "date_modified": "2020-09-17T14:09:18-04:00" }, { "phage_name": "Kaya", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I named my phage after my best friend Kaya.", "finder_name": "Jonathan Gibbs", "found_city": "Plattsburgh", "found_state": "NY", "found_country": "United States", "found_GPS_lat": "44.72109 N", "found_GPS_long": "73.389524 W", "found_year": 2019, "p_institution": { "institution_code": "SNYP", "institution_name": "State University of New York-Plattsburgh", "institution_logo": "https://phagesdb.org/media/institutions/PlattsburghSeal.png", "institution_url": "", "institution_city": "Plattsburgh", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": true, "discovery_notes": "This site would not accept a negative longitude so I just wrote the longitude as a positive number, however it is negative.", "isolation_temperature": 70, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "The morphologies of my plaques are halo plaques, they are virulent (clear), and are small, the average size is 2.5mm.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kaya_Plaque.jpg", "em_file": null, "digest_file": "https://phagesdb.org/media/digestPics/Kaya_Digest.tif", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kaya_Plaque_Thumb.png", "em_thumb_file": null, "dnam_file": null, "date_added": "2019-11-10T12:10:20-05:00", "date_modified": "2020-09-17T14:11:45-04:00" }, { "phage_name": "KayaCho", "old_names": "", "program": { "short_name": "MCG_Durban", "program_name": "Mycobacterial Genetics Course, Durban, South Africa", "program_blurb": "", "program_URL": "" }, "naming_notes": "", "finder_name": "Rukaya Asmal", "found_city": "Durban", "found_state": "", "found_country": "South Africa", "found_GPS_lat": "29.858287 S", "found_GPS_long": "31.027951 E", "found_year": 2010, "p_institution": { "institution_code": "KRIT", "institution_name": "University of Kwazulu-Natal", "institution_logo": "https://phagesdb.org/media/institutions/KwazNat-01.jpg", "institution_url": "http://www.ukzn.ac.za/Homepage.aspx", "institution_city": "", "institution_state": "", "institution_country": "", "institution_latitude": "", "institution_longitude": "" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": { "cluster": "B", "temperate": false }, "psubcluster": { "subcluster": "B6" }, "morphotype": "SIPHO", "plaque_notes": "Small to pinprick sized clear circular plaques.", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2012-07-06", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "IONTORRENT", "method_name": "Ion Torrent" }, "coverage": 540, "finishing_reactions": 39, "genome_length": 70838, "gcpercent": "70.0", "end_type": "CIRC", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": true, "is_phamerated": true, "num_ORFs": 95, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": true, "paper_published_in": { "title": "Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity", "abstract": "The bacteriophage population is large, dynamic, ancient, and genetically diverse. Limited genomic information shows that phage genomes are mosaic, and the genetic architecture of phage populations remains ill-defined. To understand the population structure of phages infecting a single host strain, we isolated, sequenced, and compared 627 phages of Mycobacterium smegmatis. Their genetic diversity is considerable, and there are 28 distinct genomic types (clusters) with related nucleotide sequences. However, amino acid sequence comparisons show pervasive genomic mosaicism, and quantification of inter-cluster and intra-cluster relatedness reveals a continuum of genetic diversity, albeit with uneven representation of different phages. Furthermore, rarefaction analysis shows that the mycobacteriophage population is not closed, and there is a constant influx of genes from other sources. Phage isolation and analysis was performed by a large consortium of academic institutions, illustrating the substantial benefits of a disseminated, structured program involving large numbers of freshman undergraduates in scientific discovery. ", "full_author_list": "Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course", "short_author_list": "Pope, Bowman, Russell, et al", "article_url": "http://elifesciences.org/content/4/e06416", "journal": "eLIFE", "journal_volume": "4", "journal_issue": "", "journal_pages": "", "pub_year": "2015", "pubmed_id": "25919952" }, "in_genbank": true, "genbank_accession": "KF024729", "refseq_accession": "NC_022061", "plaque_file": "https://phagesdb.org/media/plaquePics/KayaCho_Plaque.tif", "em_file": "https://phagesdb.org/media/emPics/KayaCho_EMPic.tif", "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KayaCho.fasta", "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/KayaCho_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/KayaCho_EMPic_Thumb.jpg", "dnam_file": "https://phagesdb.org/media/dnam/KayaCho_FP.dnam5", "date_added": "2011-05-16T04:15:40-04:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "Kayak", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name came from the first three letter of the founder's first name and the last three letters if the founder's last name. ", "finder_name": "Kayla Hiryak", "found_city": "Wilkes-Barre", "found_state": "PA", "found_country": "USA", "found_GPS_lat": "41.246284 N", "found_GPS_long": "75.88707 W", "found_year": 2013, "p_institution": { "institution_code": "WILK", "institution_name": "Wilkes University", "institution_logo": "https://phagesdb.org/media/institutions/Wilkes-University-Logo-mod.jpg", "institution_url": "http://www.wilkes.edu/", "institution_city": "Wilkes-Barre", "institution_state": "PA", "institution_country": "USA", "institution_latitude": "41.244881", "institution_longitude": "-75.88855" }, "enriched_sample": true, "discovery_notes": "The soil sample was found in a flower bed outside of a residence hall on the Wilkes University campus. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "MYO", "plaque_notes": "Lytic\r\n2mm plaque diameter", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Streptomyces", "species": "lividans", "strain_name": "JI 1326", "strain_species": { "id": 3, "genus": "Streptomyces", "species_name": "lividans", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 3, "genus": "Streptomyces", "species_name": "lividans", "species_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 4, "genus_domain": "Bacteria", "genus_name": "Streptomyces", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2013-12-11T18:50:45-05:00", "date_modified": "2021-01-28T11:04:29-05:00" }, { "phage_name": "KayBay", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "The name was taken from our BIOL105 lab section, in honor of our instructor and very helpful TA.", "finder_name": "Neni Chavez, Natalie Hu", "found_city": "Spokane", "found_state": "WA", "found_country": "United States", "found_GPS_lat": "47.66609 N", "found_GPS_long": "117.404204 W", "found_year": 2023, "p_institution": { "institution_code": "GONZ", "institution_name": "Gonzaga University", "institution_logo": "https://phagesdb.org/media/institutions/Gonzaga-01.jpg", "institution_url": "http://www.gonzaga.edu/", "institution_city": "Spokane", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "47.667468", "institution_longitude": "-117.4029" }, "enriched_sample": true, "discovery_notes": "The sample was collected right next to the lake on Gonzaga University campus. There was a lot of most soil and rocks within this location.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "Our plaque had a raised center and a round shape.", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2023-04-26T09:16:44-04:00", "date_modified": "2024-10-08T10:20:07-04:00" }, { "phage_name": "Kaydab", "old_names": "KDAB", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "We got the name Kaydab from our initials of our names Kadin Davis and Ayden Benavides.", "finder_name": "Kadin Davis and Ayden Benavides", "found_city": "Crete", "found_state": "NE", "found_country": "USA", "found_GPS_lat": "40.622517 N", "found_GPS_long": "96.948111 W", "found_year": 2017, "p_institution": { "institution_code": "DOAN", "institution_name": "Doane University", "institution_logo": "https://phagesdb.org/media/institutions/DoaneMod.png", "institution_url": "http://www.doane.edu/", "institution_city": "Crete", "institution_state": "NE", "institution_country": "USA", "institution_latitude": "40.623191", "institution_longitude": "-96.95035" }, "enriched_sample": true, "discovery_notes": "Found under an inch deep into soil, in wet moss, soil was damp. 87 degrees Fahrenheit outside. ", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KDAB_Plaque.jpg", "em_file": "https://phagesdb.org/media/emPics/KDAB_EMPic.jpg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2017-11-28T12:15:45-05:00", "date_modified": "2020-09-17T14:09:07-04:00" }, { "phage_name": "Kaydra", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kaylene Kuykendall and Audra Mirate", "found_city": "Pullman", "found_state": "WA", "found_country": "USA", "found_GPS_lat": "46.7295 N", "found_GPS_long": "117.1639 E", "found_year": 2018, "p_institution": { "institution_code": "WSHS", "institution_name": "Washington State University", "institution_logo": "https://phagesdb.org/media/institutions/logo-washington-state.jpg", "institution_url": "http://www.wsu.edu/", "institution_city": "Pullman", "institution_state": "WA", "institution_country": "USA", "institution_latitude": "46.732132", "institution_longitude": "-117.1544" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Microbacterium", "species": "foliorum", "strain_name": "NRRL B-24224", "strain_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 49, "genus": "Microbacterium", "species_name": "foliorum", "species_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 12, "genus_domain": "Bacteria", "genus_name": "Microbacterium", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2018-04-26T21:43:13-04:00", "date_modified": "2020-09-17T14:09:44-04:00" }, { "phage_name": "Kayen", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "Named after Adrien's partner, who has put up with their incessant rambling about how cool they think science is.", "finder_name": "Adrien McGrath, Amber Duffy", "found_city": "Boulder", "found_state": "CO", "found_country": "United States of America", "found_GPS_lat": "40.009071 N", "found_GPS_long": "105.268996 W", "found_year": 2021, "p_institution": { "institution_code": "UCBO", "institution_name": "University of Colorado Boulder", "institution_logo": "https://phagesdb.org/media/institutions/Colorado.jpg", "institution_url": "http://www.colorado.edu/", "institution_city": "Boulder", "institution_state": "CO", "institution_country": "USA", "institution_latitude": "40.007799", "institution_longitude": "-105.2659" }, "enriched_sample": true, "discovery_notes": "Located at the base of a tree outside the Porter building on University of Colorado Boulder campus.", "isolation_temperature": 25, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "1mm clear plaques", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kayen_Plaque.png", "em_file": "https://phagesdb.org/media/emPics/Kayen_EMPic.png", "digest_file": "https://phagesdb.org/media/digestPics/Kayen_Digest.png", "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2021-11-17T11:00:05-05:00", "date_modified": "2022-03-16T11:02:21-04:00" }, { "phage_name": "KayEsYou", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "It is a tribute to my home university of Kansas State University. KSU= KayEsYou.", "finder_name": "Kian Fogarty", "found_city": "Manhattan", "found_state": "KS", "found_country": "United States of America", "found_GPS_lat": "39.218333 S", "found_GPS_long": "96.601667 W", "found_year": 2024, "p_institution": { "institution_code": "KSSU", "institution_name": "Kansas State University", "institution_logo": "https://phagesdb.org/media/institutions/kstate.jpg", "institution_url": "http://www.k-state.edu/", "institution_city": "Manhattan", "institution_state": "KS", "institution_country": "United States", "institution_latitude": "39.197485", "institution_longitude": "-96.58606" }, "enriched_sample": null, "discovery_notes": "Collected at Johnson Lab Marlatt Plots at 7:45PM on September 2, 2024. Soil was moderately dry but not clay. Area surrounded by prolific natural grass ecosystem.", "isolation_temperature": 22, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Gordonia", "species": "terrae", "strain_name": "CAG3", "strain_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "Isoniazid-resistant mutant of G terrae 3612" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 16, "genus": "Gordonia", "species_name": "terrae", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/KayEsYou_Plaque.jpeg", "em_file": "https://phagesdb.org/media/emPics/KayEsYou_EMPic.jpeg", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Plaquesresize.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/imresizer-1732041908210.jpg", "dnam_file": null, "date_added": "2024-10-24T09:35:51-04:00", "date_modified": "2025-04-04T11:37:35-04:00" }, { "phage_name": "KayGee", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kylie Gipin", "found_city": "Santa Cruz", "found_state": "CA", "found_country": "Santa Cruz", "found_GPS_lat": "34.414 N", "found_GPS_long": "119.8489 W", "found_year": 2021, "p_institution": { "institution_code": "UCSC", "institution_name": "University of California, Santa Cruz", "institution_logo": "https://phagesdb.org/media/institutions/UCSC.jpg", "institution_url": "http://www.ucsc.edu/", "institution_city": "Santa Cruz", "institution_state": "CA", "institution_country": "USA", "institution_latitude": "36.991665", "institution_longitude": "-122.0608" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 30, "growth_notes": "", "pcluster": { "cluster": "CT", "temperate": false }, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": true, "date_finished": "2022-01-25", "seq_facility": { "short_name": "PBI", "facility_name": "Pittsburgh Bacteriophage Institute", "contact_person": "Dan Russell", "shipping_address": "344 Crawford Hall\r\n4249 5th Avenue\r\nPittsburgh, PA 15260", "facility_website": "" }, "seq_method": { "short_name": "ILLUMINA", "method_name": "Illumina" }, "coverage": 162, "finishing_reactions": 0, "genome_length": 48365, "gcpercent": "60.3", "end_type": "3PRI", "repeat_length": null, "end_notes": "", "overhang_length": 10, "overhang_sequence": "CGGTAGGCTT", "sequencing_notes": "A small percentage (~10%) of the sequencing reads for this phage appear to be from a Cluster CZ phage. It's possible that this phage has a low level of a contaminant phage.", "duplicate_notes": "", "is_annotated": false, "is_phamerated": true, "num_ORFs": 74, "num_tRNAs": 0, "num_tmRNAs": 0, "submitted_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KayGee_CompleteNotes.xlsx", "submitted_minimal_dnam_file": "https://phagesdb.org/media/annotation_submission/DNAMasterFiles/KayGee_Minimal_Final_GknoO2Y.dnam5", "submitted_author_list": "https://phagesdb.org/media/annotation_submission/AuthorLists/KayGee_Authors.csv", "submitted_cover_sheet": "https://phagesdb.org/media/annotation_submission/CoverSheets/KayGee_CoverSheet.docx", "submitted_annotation_date": "2024-07-08T16:13:05-04:00", "qced_genbank_file": "https://phagesdb.org/media/annotation_submission/GenBankFiles/KayGee_flat.txt", "qced_genbank_file_date": "2024-07-08T16:13:05-04:00", "isolation_host": { "genus": "Gordonia", "species": "rubripertincta", "strain_name": "NRRL B-16540", "strain_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "", "genbank_accession": "", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 21, "genus": "Gordonia", "species_name": "rubripertincta", "species_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 6, "genus_domain": "Bacteria", "genus_name": "Gordonia", "genus_wikipedia": "", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": true, "genbank_accession": "PQ114738", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": "https://phagesdb.org/media/fastas/KayGee.fasta", "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2022-01-25T15:32:00-05:00", "date_modified": "2025-09-13T06:41:39-04:00" }, { "phage_name": "KayGrayson", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Kaysi Gray", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.92375 N", "found_GPS_long": "77.01947 W", "found_year": 2014, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": null, "discovery_notes": "", "isolation_temperature": null, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2014-11-26T00:19:15-05:00", "date_modified": "2015-04-29T14:32:35-04:00" }, { "phage_name": "Kayjay", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "", "finder_name": "Yunia Alvarez", "found_city": "Blauvelt ", "found_state": "NY", "found_country": "USA", "found_GPS_lat": "41.0528 N", "found_GPS_long": "73.9501 W", "found_year": 2016, "p_institution": { "institution_code": "DCBL", "institution_name": "Dominican University New York", "institution_logo": "https://phagesdb.org/media/institutions/CV_DU_stacked_2022.png", "institution_url": "https://www.duny.edu/", "institution_city": "Orangeburg", "institution_state": "NY", "institution_country": "USA", "institution_latitude": "41.039643", "institution_longitude": "-73.94976" }, "enriched_sample": false, "discovery_notes": "", "isolation_temperature": 23, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "SIPHO", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": "https://phagesdb.org/media/plaquePics/Kayjay_Plaque.JPG", "em_file": "https://phagesdb.org/media/emPics/Kayjay_EMPic.TIF", "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": "https://phagesdb.org/media/plaquePics/Kayjay_Plaque_Thumb.jpg", "em_thumb_file": "https://phagesdb.org/media/emPics/Kayjay_EMPic_Thumb.jpg", "dnam_file": null, "date_added": "2016-10-27T17:05:55-04:00", "date_modified": "2020-09-17T14:07:20-04:00" }, { "phage_name": "Kayjor", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "This phage name is a childhood nickname.", "finder_name": "Kayla Young", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.9228 N", "found_GPS_long": "77.0218 W", "found_year": 2019, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "", "isolation_temperature": 34, "growth_notes": "", "pcluster": null, "psubcluster": null, "morphotype": "", "plaque_notes": "", "lysogeny_notes": "", "seq_finished": false, "date_finished": null, "seq_facility": null, "seq_method": null, "coverage": null, "finishing_reactions": null, "genome_length": null, "gcpercent": null, "end_type": "", "repeat_length": null, "end_notes": "", "overhang_length": null, "overhang_sequence": "", "sequencing_notes": "", "duplicate_notes": "", "is_annotated": false, "is_phamerated": false, "num_ORFs": null, "num_tRNAs": null, "num_tmRNAs": null, "submitted_dnam_file": null, "submitted_minimal_dnam_file": null, "submitted_author_list": null, "submitted_cover_sheet": null, "submitted_annotation_date": null, "qced_genbank_file": null, "qced_genbank_file_date": null, "isolation_host": { "genus": "Mycobacterium", "species": "smegmatis", "strain_name": "mc²155", "strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", "refseq_accession": "", "plaque_file": null, "em_file": null, "digest_file": null, "vdigest_file": null, "fasta_file": null, "plaque_thumb_file": null, "em_thumb_file": null, "dnam_file": null, "date_added": "2019-09-18T10:45:25-04:00", "date_modified": "2020-09-17T14:11:04-04:00" }, { "phage_name": "KayKardashian", "old_names": "", "program": { "short_name": "SEAPHAGES", "program_name": "Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science", "program_blurb": "", "program_URL": "https://www.hhmi.org/programs/science-education-alliance" }, "naming_notes": "I could not think of a name, so I named it after my favorite person in the world—Kim Kardashian.", "finder_name": "Kayla Redditt", "found_city": "Washington", "found_state": "DC", "found_country": "USA", "found_GPS_lat": "38.922423 N", "found_GPS_long": "77.021076 W", "found_year": 2014, "p_institution": { "institution_code": "HWRD", "institution_name": "Howard University", "institution_logo": "https://phagesdb.org/media/institutions/howard_university_logo2.jpg", "institution_url": "http://www.howard.edu/", "institution_city": "Washington", "institution_state": "DC", "institution_country": "USA", "institution_latitude": "38.922905", "institution_longitude": "-77.01943" }, "enriched_sample": true, "discovery_notes": "\"KayKardashian\" was discovered in dry soil at Blackburn Center, located on Howard University's campus around 4:30 p.m. on September 15th, 2014. 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"strain_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "ATCC_ID": "700084", "genbank_accession": "NC_008596.1", "strain_information": "" }, "verified_hosts": [], "verified_non_hosts": [], "host_species": { "id": 1, "genus": "Mycobacterium", "species_name": "smegmatis", "species_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "species_wikipedia": "" }, "host_genus": { "id": 1, "genus_domain": "Bacteria", "genus_name": "Mycobacterium", "genus_wikipedia": "http://en.wikipedia.org/wiki/Mycobacterium", "is_actinomycetales": true }, "in_paper": false, "paper_published_in": null, "in_genbank": false, "genbank_accession": "", 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