Gordonia phage Aphelion
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Detailed Information for Phage Aphelion
Discovery Information
Isolation HostGordonia terrae 3612
Found ByYessica Bonilla
Year Found2016
Location FoundWilliamsburg, VA USA
Finding InstitutionCollege of William & Mary
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates37.270645 N, 76.713451 W Map
Discovery NotesFound on October 3rd, 2016, 2:50 pm, 73°F (22.2°C). Crim Dell Creek, depth of 2 inches.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 9, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage137
Genome length (bp)93276
Character of genome ends3' Sticky Overhang
Overhang Length19 bases
Overhang SequenceCGCGACGCTC
GC Content61.9%
Sequencing NotesMixed population, approximately 15% of reads blast to Cluster CT
Fasta file available?Yes: Download fasta file
Characterization
ClusterCQ
SubclusterCQ1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversidad Autónoma de Nuevo León
Annotation StatusIn GenBank
Plaque Notesnumerous turbid plaques of small diameter distributed across the plate
MorphotypeSiphoviridae
Number of Genes176
Number of tRNAs7
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Aphelion_1

Aphelion_2

Aphelion_3

Aphelion_4

Aphelion_5

Aphelion_6

Aphelion_7

Aphelion_8

Aphelion_9

Aphelion_10

Aphelion_11

Aphelion_12

Aphelion_13

Aphelion_14
(HNH endonuclease)

Aphelion_15

Aphelion_16

Aphelion_17

Aphelion_18

Aphelion_19

Aphelion_20 — tRNA

Aphelion_21 — tRNA

Aphelion_22 — tRNA

Aphelion_23 — tRNA

Aphelion_24 — tRNA

Aphelion_25
(HNH endonuclease)

Aphelion_26 — tRNA

Aphelion_27

Aphelion_28 — tRNA

Aphelion_29

Aphelion_30
(terminase)

Aphelion_31
(portal protein)

Aphelion_32
(MuF-like minor capsid protein)

Aphelion_33

Aphelion_34
(capsid decoration protein)

Aphelion_35
(major capsid protein)

Aphelion_36

Aphelion_37
(head-to-tail adaptor)

Aphelion_38
(head-to-tail stopper)

Aphelion_39

Aphelion_40
(tail terminator)

Aphelion_41
(holliday junction resolvase)

Aphelion_42

Aphelion_43

Aphelion_44
(tail assembly chaperone)

Aphelion_45
(tail assembly chaperone)

Aphelion_46
(tape measure protein)

Aphelion_47
(minor tail protein)

Aphelion_48
(minor tail protein)

Aphelion_49
(lysin A, protease C39 domain)

Aphelion_50
(lysin A, L-Ala-D-Glu peptidase domain)

Aphelion_51
(holin)

Aphelion_52

Aphelion_53

Aphelion_54

Aphelion_55
(minor tail protein)

Aphelion_56
(minor tail protein)

Aphelion_57

Aphelion_58

Aphelion_59

Aphelion_60
(Lsr2-like DNA bridging protein)

Aphelion_61

Aphelion_62

Aphelion_63

Aphelion_64
(exonuclease VII)

Aphelion_65

Aphelion_66

Aphelion_67

Aphelion_68

Aphelion_69
(MRE11 double-strand break repair endo/exonuclease)

Aphelion_70

Aphelion_71

Aphelion_72
(RtcB-like RNA ligase)

Aphelion_73

Aphelion_74

Aphelion_75

Aphelion_76

Aphelion_77

Aphelion_78

Aphelion_79

Aphelion_80

Aphelion_81

Aphelion_82

Aphelion_83
(tyrosine integrase)

Aphelion_84

Aphelion_85
(immunity repressor)

Aphelion_86

Aphelion_87
(RecE-like exonuclease)

Aphelion_88

Aphelion_89

Aphelion_90
(RecT-like DNA pairing protein)

Aphelion_91

Aphelion_92

Aphelion_93
(ThyX-like thymidylate synthase)

Aphelion_94

Aphelion_95

Aphelion_96

Aphelion_97

Aphelion_98

Aphelion_99
(helix-turn-helix DNA-binding protein)

Aphelion_100

Aphelion_101

Aphelion_102

Aphelion_103
(helix-turn-helix DNA-binding protein)

Aphelion_104

Aphelion_105

Aphelion_106

Aphelion_107
(MazG-like nucleotide pyrophosphate)

Aphelion_108

Aphelion_109

Aphelion_110

Aphelion_111

Aphelion_112

Aphelion_113

Aphelion_114

Aphelion_115

Aphelion_116

Aphelion_117

Aphelion_118

Aphelion_119

Aphelion_120

Aphelion_121

Aphelion_122

Aphelion_123
(DNA primsae/helicase)

Aphelion_124

Aphelion_125
(thioredoxin)

Aphelion_126
(ssDNA binding protein)

Aphelion_127

Aphelion_128
(WhiB family transcription factor)

Aphelion_129

Aphelion_130

Aphelion_131

Aphelion_132

Aphelion_133
(holliday junction resolvase)

Aphelion_134

Aphelion_135

Aphelion_136
(nucleotidyltransferase)

Aphelion_137

Aphelion_138

Aphelion_139

Aphelion_140

Aphelion_141

Aphelion_142

Aphelion_143
(phosphatase)

Aphelion_144

Aphelion_145
(deoxycytidylate deaminase)

Aphelion_146

Aphelion_147
(serine hydrolase)

Aphelion_148

Aphelion_149

Aphelion_150

Aphelion_151

Aphelion_152

Aphelion_153

Aphelion_154

Aphelion_155

Aphelion_156

Aphelion_157

Aphelion_158

Aphelion_159

Aphelion_160

Aphelion_161

Aphelion_162

Aphelion_163

Aphelion_164

Aphelion_165

Aphelion_166

Aphelion_167

Aphelion_168

Aphelion_169

Aphelion_170

Aphelion_171

Aphelion_172

Aphelion_173

Aphelion_174

Aphelion_175

Aphelion_176

Aphelion_177

Aphelion_178

Aphelion_179

Aphelion_180

Aphelion_181

Aphelion_182

Aphelion_183

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK376959
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 121
Pitt Freezer Box Grid# E7
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload