Gordonia phage Lozinak
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Detailed Information for Phage Lozinak
Discovery Information
Isolation HostGordonia terrae 3612
Found ByLeon Lin
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.436316, -79.955480 Map
Discovery NotesFound in the soil bed of 400 mckee place under the porch. Soil was cool and about 75 degrees Fahrenheit, mildly moist.
Naming NotesNamed after a friend with the last name Lozinak
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 12, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage559
Genome length (bp)93201
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGCGACGCTC
GC Content61.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCQ
SubclusterCQ1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque Notessmall, clear plaques, approx 1.5mm in diameter
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Lozinak_1

Lozinak_2

Lozinak_3

Lozinak_4

Lozinak_5

Lozinak_6

Lozinak_7

Lozinak_8

Lozinak_9

Lozinak_10

Lozinak_11

Lozinak_12

Lozinak_13

Lozinak_14
(HNH endonuclease)

Lozinak_15

Lozinak_16

Lozinak_17

Lozinak_18

Lozinak_19

Lozinak_25
(HNH endonuclease)

Lozinak_27

Lozinak_29

Lozinak_30
(terminase)

Lozinak_31
(portal protein)

Lozinak_32
(MuF-like minor capsid protein)

Lozinak_33

Lozinak_34
(capsid decoration protein)

Lozinak_35
(major capsid protein)

Lozinak_36

Lozinak_37

Lozinak_38

Lozinak_39

Lozinak_40
(tail terminator)

Lozinak_41
(holliday junction resolvase)

Lozinak_42

Lozinak_43

Lozinak_44
(tail assembly chaperone)

Lozinak_45
(tail assembly chaperone)

Lozinak_46
(tape measure protein)

Lozinak_47
(minor tail protein)

Lozinak_48
(minor tail protein)

Lozinak_49
(lysin A, protease C39 domain)

Lozinak_50
(HNH endonuclease)

Lozinak_51
(lysin A, L-Ala-D-Glu peptidase domain)

Lozinak_52
(holin)

Lozinak_53

Lozinak_54

Lozinak_55

Lozinak_56
(minor tail protein)

Lozinak_57
(minor tail protein)

Lozinak_58

Lozinak_59

Lozinak_60

Lozinak_61
(Lsr2-like DNA bridging protein)

Lozinak_62

Lozinak_63

Lozinak_64

Lozinak_65
(exonuclease VII)

Lozinak_66

Lozinak_67

Lozinak_68

Lozinak_69

Lozinak_70
(MRE11 double-strand break repair endo/exonuclease)

Lozinak_71

Lozinak_72

Lozinak_73
(RtcB-like RNA ligase)

Lozinak_74

Lozinak_75

Lozinak_76

Lozinak_77

Lozinak_78

Lozinak_79

Lozinak_80

Lozinak_81

Lozinak_82

Lozinak_83

Lozinak_84
(tyrosine integrase)

Lozinak_85

Lozinak_86
(immunity repressor)

Lozinak_87

Lozinak_88
(RecE-like exonuclease)

Lozinak_89

Lozinak_90

Lozinak_91
(RecT-like DNA pairing protein)

Lozinak_92
(ThyX-like thymidylate synthase)

Lozinak_93

Lozinak_94

Lozinak_95

Lozinak_96

Lozinak_97

Lozinak_98
(helix-turn-helix DNA-binding protein)

Lozinak_99

Lozinak_100

Lozinak_101

Lozinak_102
(helix-turn-helix DNA-binding protein)

Lozinak_103

Lozinak_104

Lozinak_105

Lozinak_106
(MazG-like nucleotide pyrophosphate)

Lozinak_107

Lozinak_108

Lozinak_109

Lozinak_110

Lozinak_111

Lozinak_112

Lozinak_113

Lozinak_114

Lozinak_115

Lozinak_116

Lozinak_117

Lozinak_118

Lozinak_119

Lozinak_120

Lozinak_121

Lozinak_122

Lozinak_123
(DNA primsae/helicase)

Lozinak_124

Lozinak_125
(thioredoxin)

Lozinak_126
(ssDNA-binding protein)

Lozinak_127

Lozinak_128

Lozinak_129

Lozinak_130

Lozinak_131

Lozinak_132

Lozinak_133

Lozinak_134
(holliday junction resolvase)

Lozinak_135

Lozinak_136

Lozinak_137
(nucleotidyltransferase)

Lozinak_138

Lozinak_139

Lozinak_140

Lozinak_141

Lozinak_142

Lozinak_143

Lozinak_144
(phosphatase)

Lozinak_145

Lozinak_146
(deoxycytidylate deaminase)

Lozinak_147

Lozinak_148
(serine hydrolase)

Lozinak_149

Lozinak_150

Lozinak_151

Lozinak_152
(DNA binding protein)

Lozinak_153

Lozinak_154

Lozinak_155

Lozinak_156

Lozinak_157

Lozinak_158

Lozinak_159

Lozinak_160

Lozinak_161

Lozinak_162

Lozinak_163

Lozinak_164

Lozinak_165

Lozinak_166

Lozinak_167

Lozinak_168

Lozinak_169

Lozinak_170

Lozinak_171

Lozinak_172

Lozinak_173

Lozinak_174

Lozinak_175

Lozinak_176

Lozinak_177

Lozinak_178

Lozinak_179

Lozinak_180

Lozinak_181

Lozinak_182

Lozinak_183

Lozinak_184

Lozinak_185

Lozinak_186

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMF919520
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 5
Pitt Freezer Box Grid# C11
Available Files
GenBank File for PhameratorDownload