| Detailed Information for Phage Appa | |
| Discovery Information | |
| Isolation Host | Microbacterium foliorum NRRL B-24224 |
| Found By | Aleem Mohamed |
| Year Found | 2016 |
| Location Found | Baltimore, MD USA |
| Finding Institution | Howard Hughes Medical Institute |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 30°C |
| GPS Coordinates | 39.326889 N, 76.627556 W Map |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Feb 9, 2017 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 2557 |
| Genome length (bp) | 38684 |
| Character of genome ends | Circularly Permuted |
| End Determination Notes | No read start buildups were found with PAUSE, and the coverage was fairly consistent throughout. |
| GC Content | 68.0% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | GA |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members | |
| Annotating Institution | Howard Hughes Medical Institute |
| Annotation Status | In GenBank |
| Number of Genes | 65 |
| Number of tRNAs | 1 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewAppa_1 Appa_2 Appa_3 Appa_4 Appa_5 Appa_6 Appa_7 Appa_8 Appa_9 Appa_10 Appa_11 Appa_12 Appa_13 Appa_14 Appa_15 Appa_16 Appa_17 Appa_18 Appa_19 Appa_20 Appa_21 Appa_22 Appa_23 Appa_24 Appa_25 Appa_26 Appa_27 Appa_28 Appa_29 Appa_30 Appa_31 Appa_32 Appa_33 Appa_34 Appa_35 Appa_36 Appa_37 Appa_38 Appa_39 Appa_40 Appa_41 Appa_42 Appa_43 Appa_44 Appa_45 Appa_46 Appa_47 Appa_48 — tRNA Appa_49 Appa_50 Appa_51 Appa_52 Appa_53 Appa_54 Appa_55 Appa_56 Appa_57 Appa_58 Appa_59 Appa_60 Appa_61 Appa_62 Appa_63 Appa_64 Appa_65 Appa_66 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MH153799 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 96 |
| Pitt Freezer Box Grid# | H3 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| Final DNAMaster File | Download |
| GenBank File for Phamerator | Download |
