Microbacterium phage Pickles13
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Detailed Information for Phage Pickles13
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found ByMaggie Stucko
Year Found2020
Location FoundDowners grove, IL USA
Finding InstitutionIllinois Wesleyan University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates41.758611 N, 88.013333 W Map
Discovery NotesFrom my local pond. Soil was surrounding the pond so soil was mildly moist.
Naming NotesPickles is my favorite food and nickname and 13 is my lucky number.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 15, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1123
Genome length (bp)39237
Character of genome endsCircularly Permuted
GC Content67.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterGA
Subcluster--
Cluster Life CycleUnknown
Lysogeny NotesPickles13 did not have any successful lysogen tests suggesting it does not have a lysogen.
Other Cluster Members
Annotating InstitutionIllinois Wesleyan University
Annotation StatusIn GenBank
Plaque NotesMany, tiny (pin prick like), circular plaques
Has been Phamerated?Yes
Gene List

Click to View

Pickles13_1
(terminase small subunit)

Pickles13_2

Pickles13_3

Pickles13_4

Pickles13_5
(terminase large subunit)

Pickles13_6

Pickles13_7
(portal protein)

Pickles13_8
(MuF-like minor capsid protein)

Pickles13_9

Pickles13_10

Pickles13_11
(scaffolding protein)

Pickles13_12
(major capsid protein)

Pickles13_13

Pickles13_14
(head-to-tail adaptor)

Pickles13_15
(head-to-tail stopper)

Pickles13_16

Pickles13_17
(tail terminator)

Pickles13_18
(major tail protein)

Pickles13_19
(tail assembly chaperone)

Pickles13_20
(tail assembly chaperone)

Pickles13_21
(tape measure protein)

Pickles13_22
(minor tail protein)

Pickles13_23
(minor tail protein)

Pickles13_24

Pickles13_25
(minor tail protein)

Pickles13_26
(minor tail protein)

Pickles13_27

Pickles13_28
(lysin A)

Pickles13_29

Pickles13_30
(minor tail protein)

Pickles13_31
(holin)

Pickles13_32

Pickles13_33

Pickles13_34

Pickles13_35

Pickles13_36
(RuvC-like resolvase)

Pickles13_37
(exonuclease)

Pickles13_38
(RecT-like ssDNA binding protein)

Pickles13_39

Pickles13_40
(HNH endonuclease)

Pickles13_41

Pickles13_42
(DnaC-like helicase loader)

Pickles13_43
(DnaB-like dsDNA helicase)

Pickles13_44
(ssDNA binding protein)

Pickles13_45
(ParB-like nuclease domain protein)

Pickles13_46
(acetyltransferase)

Pickles13_48

Pickles13_49

Pickles13_50

Pickles13_51
(helix-turn-helix DNA binding domain protein)

Pickles13_52

Pickles13_53

Pickles13_54
(helix-turn-helix DNA binding domain protein)

Pickles13_55

Pickles13_56

Pickles13_57
(helix-turn-helix DNA binding domain protein)

Pickles13_58
(DNA binding protein)

Pickles13_59

Pickles13_60

Pickles13_61

Pickles13_62

Pickles13_63

Pickles13_64

Pickles13_65

Pickles13_66

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMZ456037
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 117
Pitt Freezer Box Grid# D1
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload