BLAST and GeneMark available upon entering GPS coordinates
Detailed Information for Phage BackstagePass | |
Discovery Information | |
Isolation Host | Gordonia terrae 3612 |
Found By | A Kancha, I Lewandowski, J Ames, H Reilly |
Year Found | 2022 |
Location Found | Pittsburgh, PA USA |
Finding Institution | University of Pittsburgh |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | No |
Isolation Temperature | 30°C |
GPS Coordinates | Unavailable |
Naming Notes | We wanted something that incorporated "phage" but without the actual word in it. |
Sequencing Information | |
Sequencing Complete? | Yes |
Date Sequencing Completed | Aug 4, 2023 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Approximate Shotgun Coverage | 476 |
Genome length (bp) | 46223 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | CGCCGCGGTA |
GC Content | 66.8% |
Fasta file available? | Available upon entering GPS coordinates |
Characterization | |
Cluster | DB |
Subcluster | -- |
Cluster Life Cycle | Temperate |
Other Cluster Members | |
Annotating Institution | University of Pittsburgh |
Annotation Status | Overdue (Expected completion by 2/4/2024) |
Plaque Notes | ten fold plate and there are medium sized clearings. |
Number of Genes | 71 |
Number of tRNAs | 1 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
Click to ViewBackstagePass_1 BackstagePass_2 BackstagePass_3 BackstagePass_4 BackstagePass_5 BackstagePass_6 BackstagePass_7 BackstagePass_8 BackstagePass_9 BackstagePass_10 BackstagePass_11 BackstagePass_12 BackstagePass_13 BackstagePass_14 BackstagePass_15 BackstagePass_16 BackstagePass_17 BackstagePass_18 BackstagePass_19 BackstagePass_20 BackstagePass_21 BackstagePass_22 BackstagePass_23 BackstagePass_24 BackstagePass_25 BackstagePass_26 BackstagePass_27 BackstagePass_28 BackstagePass_29 BackstagePass_30 BackstagePass_31 BackstagePass_32 BackstagePass_33 BackstagePass_34 — tRNA BackstagePass_35 BackstagePass_36 BackstagePass_37 BackstagePass_38 BackstagePass_39 BackstagePass_40 BackstagePass_41 BackstagePass_42 BackstagePass_43 BackstagePass_44 BackstagePass_45 BackstagePass_46 BackstagePass_47 BackstagePass_48 BackstagePass_49 BackstagePass_50 BackstagePass_51 BackstagePass_52 BackstagePass_53 BackstagePass_54 BackstagePass_55 BackstagePass_56 BackstagePass_57 BackstagePass_58 BackstagePass_59 BackstagePass_60 BackstagePass_61 BackstagePass_62 BackstagePass_63 BackstagePass_64 BackstagePass_65 BackstagePass_66 BackstagePass_67 BackstagePass_68 BackstagePass_69 BackstagePass_70 BackstagePass_71 BackstagePass_72 |
Publication Info | |
Uploaded to GenBank? | No |
GenBank Accession | None yet |
Refseq Number | None yet |
Archiving Info | |
Archiving status | Archived |
Pitt Freezer Box# | 159 |
Pitt Freezer Box Grid# | D11 |
Available Files | |
Plaque Picture | Download |
Restriction Digest Picture | Download |