Gordonia phage Opie
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Detailed Information for Phage Opie
Discovery Information
Isolation HostGordonia terrae 3612
Former namesPoesie
Found ByEmma Gay
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates40.443298 N, 79.955935 W Map
Discovery NotesThis phage was isolated from a sample obtained from a flower bed outside Holland Hall at the University of Pittsburgh. The soil sample was wet due to overnight rains. Vegetation present included some flowers and small weeds. Insect life was also present in the soil.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 10, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1231
Genome length (bp)47713
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGCCGCGGTA
GC Content67.0%
Sequencing Notesat position 32434 bp approximately 49% of reads contain a string of 13-14 G's, consensus 12 G's
Fasta file available?Yes: Download fasta file
Characterization
ClusterDB
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusBeing Annotated (Expected completion by 2/23/2020)
Plaque NotesThe plaques formed are halo in shape. The center of the halos are medium in size and clear. The halo that surround the clearing is cloudy.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 57
Pitt Freezer Box Grid# H4
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload