Microbacterium phage Badulia
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| Detailed Information for Phage Badulia | |
| Discovery Information | |
| Isolation Host | Microbacterium testaceum NRRL B-24232 |
| Found By | Marguerite Slavin |
| Year Found | 2019 |
| Location Found | Nyack, NY United States |
| Finding Institution | Alliance University (formerly Nyack College) |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 28°C |
| GPS Coordinates | 41.0893 N, 73.9325 W Map |
| Discovery Notes | Found in cool shaded area next to Buildings & Grounds Building. Soil was taken from about a half an inch down in a very dry rocky area. |
| Naming Notes | My friend helped me get my soil sample and I call her Julia Badulia. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Aug 19, 2020 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 4407 |
| Genome length (bp) | 15460 |
| Character of genome ends | Covalent Terminal Protein |
| End Determination Notes | This phage shows similarity to other Tectiviridae, which generally have covalently-bound terminal proteins. In addition, the sequencing reads end at a specific base without any circularizing reads, and the genome has ~120 bp inverted terminal repeats. Taken together, these lines of evidence point to this phage likely having covalently-bound terminal proteins. |
| GC Content | 54.6% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | GE |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
Click to View |
| Annotating Institution | Alliance University (formerly Nyack College) |
| Annotation Status | In GenBank |
| Plaque Notes | Forms clear plaques |
| Number of Genes | 33 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewBadulia_1 Badulia_2 Badulia_3 Badulia_4 Badulia_5 Badulia_6 Badulia_7 Badulia_8 Badulia_9 Badulia_10 Badulia_11 Badulia_12 Badulia_13 Badulia_14 Badulia_15 Badulia_16 Badulia_17 Badulia_18 Badulia_19 Badulia_20 Badulia_21 Badulia_22 Badulia_23 Badulia_24 Badulia_25 Badulia_26 Badulia_27 Badulia_28 Badulia_29 Badulia_30 Badulia_31 Badulia_32 Badulia_33 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MZ150790 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 97 |
| Pitt Freezer Box Grid# | B4 |
| Available Files | |
| GenBank File for Phamerator | Download |