| Detailed Information for Phage Bogota | |
| Discovery Information | |
| Isolation Host | Streptomyces griseus ATCC 10137 |
| Found By | Sara McCown |
| Year Found | 2021 |
| Location Found | Denton, TX United States |
| Finding Institution | University of North Texas |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 30°C |
| GPS Coordinates | 33.219166 N, 97.160091 W Map |
| Discovery Notes | The weather was partly cloudy with slightly humid air. The soil was 5 inches away from a sidewalk and I dug about an inch in the ground. The soil was moist and had a mixture of a brown reddish and dark brown color. I dug in between the weeds with a plastic spoon and put the sample in a plastic bag. |
| Naming Notes | The name came from the tv show Money Heist. Bogota is one of my favorite characters. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Sep 21, 2022 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 1604 |
| Genome length (bp) | 54184 |
| Character of genome ends | Circularly Permuted |
| GC Content | 68.3% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | BH |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members | |
| Annotating Institution | University of North Texas |
| Annotation Status | In GenBank |
| Plaque Notes | Plaques around 1 mm, cloudy pinpoint. Lysogenic life cycle |
| Number of Genes | 81 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewBogota_1 Bogota_2 Bogota_3 Bogota_4 Bogota_5 Bogota_6 Bogota_7 Bogota_8 Bogota_9 Bogota_10 Bogota_11 Bogota_12 Bogota_13 Bogota_14 Bogota_15 Bogota_16 Bogota_17 Bogota_18 Bogota_19 Bogota_20 Bogota_21 Bogota_22 Bogota_23 Bogota_24 Bogota_25 Bogota_26 Bogota_27 Bogota_28 Bogota_29 Bogota_30 Bogota_31 Bogota_32 Bogota_33 Bogota_34 Bogota_35 Bogota_36 Bogota_37 Bogota_38 Bogota_39 Bogota_40 Bogota_41 Bogota_42 Bogota_43 Bogota_44 Bogota_45 Bogota_46 Bogota_47 Bogota_48 Bogota_49 Bogota_50 Bogota_51 Bogota_52 Bogota_53 Bogota_54 Bogota_55 Bogota_56 Bogota_57 Bogota_58 Bogota_59 Bogota_60 Bogota_61 Bogota_62 Bogota_63 Bogota_64 Bogota_65 Bogota_66 Bogota_67 Bogota_68 Bogota_69 Bogota_70 Bogota_71 Bogota_72 Bogota_73 Bogota_74 Bogota_75 Bogota_76 Bogota_77 Bogota_78 Bogota_79 Bogota_80 Bogota_81 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | OQ938579 |
| Refseq Number | None yet |
| Published in Paper | Hughes LE et al. 2018, Genome Announcements: Eight Genome Sequences of Cluster BE1 Phages That Infect Streptomyces Species. |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 2.0*10^8 |
| Pitt Freezer Box# | 143 |
| Pitt Freezer Box Grid# | B9 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| GenBank File for Phamerator | Download |
