Gordonia phage Cafasso
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Detailed Information for Phage Cafasso
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found ByKristen Butela
Year Found2020
Location FoundMcKeesport, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.31672 N, 79.8045 W Map
Discovery NotesSoil sample collected by Suzanne Cafasso. Sample yielded two plaque morphologies on G. terrae 3612 and one plaque morphology on G. rubripertincta.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 24, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage903
Genome length (bp)87157
Character of genome endsCircularly Permuted
GC Content67.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDZ
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Has been Phamerated?Yes
Gene List

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Cafasso_1
(terminase small subunit)

Cafasso_2
(helix-turn-helix DNA binding domain protein)

Cafasso_3
(terminase large subunit)

Cafasso_4
(portal protein)

Cafasso_5
(MuF-like minor capsid protein)

Cafasso_6
(scaffolding protein)

Cafasso_7
(major capsid protein)

Cafasso_8

Cafasso_9
(head-to-tail adaptor)

Cafasso_10
(head-to-tail stopper)

Cafasso_11

Cafasso_12
(tail terminator)

Cafasso_13
(major tail protein)

Cafasso_14

Cafasso_15
(tail assembly chaperone)

Cafasso_16
(tail assembly chaperone)

Cafasso_17
(tape measure protein)

Cafasso_18
(minor tail protein)

Cafasso_19
(minor tail protein)

Cafasso_20
(HNH endonuclease)

Cafasso_21

Cafasso_22
(minor tail protein)

Cafasso_23

Cafasso_24

Cafasso_25
(minor tail protein)

Cafasso_26

Cafasso_27
(lysin A, protease C39 domain)

Cafasso_28
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

Cafasso_29

Cafasso_30
(cysteine protease)

Cafasso_31
(holin)

Cafasso_32

Cafasso_33
(lysin B)

Cafasso_34
(immunity repressor)

Cafasso_35
(tyrosine integrase)

Cafasso_36
(peptidase)

Cafasso_37
(Cro protein)

Cafasso_38
(helix-turn-helix DNA binding domain protein)

Cafasso_39
(RecE-like exonuclease)

Cafasso_40
(RecT-like DNA pairing protein)

Cafasso_41

Cafasso_42

Cafasso_43
(excise)

Cafasso_44

Cafasso_45
(DNA binding protein)

Cafasso_46

Cafasso_47
(RepA-like replication initiator)

Cafasso_48

Cafasso_49
(DnaB-like dsDNA helicase)

Cafasso_50

Cafasso_51

Cafasso_52

Cafasso_53
(DNA binding protein)

Cafasso_54
(helix-turn-helix DNA binding domain protein)

Cafasso_55
(PnuC-like nicotinamide riboside transporter)

Cafasso_56

Cafasso_57
(lipoprotein)

Cafasso_58

Cafasso_59

Cafasso_60

Cafasso_61

Cafasso_62

Cafasso_63

Cafasso_64

Cafasso_65

Cafasso_66

Cafasso_67
(DNA binding protein)

Cafasso_68

Cafasso_69
(DNA binding protein)

Cafasso_70

Cafasso_71
(DnaQ-like DNA polymerase III subunit)

Cafasso_72
(ThyX-like thymidylate synthase)

Cafasso_73

Cafasso_74

Cafasso_75

Cafasso_76

Cafasso_77
(DNA binding protein)

Cafasso_78

Cafasso_79

Cafasso_80

Cafasso_81

Cafasso_82
(DNA binding protein)

Cafasso_83

Cafasso_84

Cafasso_85

Cafasso_86

Cafasso_87
(DNA binding protein)

Cafasso_88
(helix-turn-helix DNA binding domain protein)

Cafasso_89

Cafasso_90

Cafasso_91
(MazG-like nucleotide pyrophosphohydrolase)

Cafasso_92
(DnaQ-like DNA polymerase III subunit)

Cafasso_93

Cafasso_94
(HNH endonuclease)

Cafasso_95

Cafasso_96

Cafasso_97

Cafasso_98
(metallophosphoesterase)

Cafasso_99

Cafasso_100

Cafasso_101

Cafasso_102
(ribonucleotide reductase)

Cafasso_103

Cafasso_104

Cafasso_105

Cafasso_106

Cafasso_107
(HNH endonuclease)

Cafasso_108

Cafasso_109

Cafasso_110

Cafasso_111

Cafasso_112

Cafasso_113

Cafasso_114

Cafasso_115

Cafasso_116
(ADP-ribosyl glycohydrolase)

Cafasso_117

Cafasso_118

Cafasso_119

Cafasso_120

Cafasso_121

Cafasso_122
(DNA binding protein)

Cafasso_123

Cafasso_124

Cafasso_125

Cafasso_126

Cafasso_127

Cafasso_128

Cafasso_129

Cafasso_130

Cafasso_131
(RuvC-like resolvase)

Cafasso_132

Cafasso_133

Cafasso_134
(ADP-ribosyltransferase)

Cafasso_135

Cafasso_136
(DNA binding protein)

Cafasso_137

Cafasso_138

Cafasso_139

Cafasso_140

Cafasso_141

Cafasso_142

Cafasso_143

Cafasso_144

Cafasso_145

Cafasso_146

Cafasso_147

Cafasso_148

Cafasso_149

Cafasso_150

Cafasso_151

Cafasso_152

Cafasso_153

Cafasso_154

Cafasso_155

Cafasso_156

Cafasso_157

Cafasso_158

Cafasso_159

Cafasso_160

Cafasso_161

Cafasso_162

Cafasso_163

Cafasso_164

Cafasso_165

Cafasso_166
(PAPS reductase-like domain protein)

Cafasso_167

Cafasso_168

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMZ322021
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 125
Pitt Freezer Box Grid# C7
Available Files
GenBank File for PhameratorDownload