Gordonia phage ObLaDi
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Detailed Information for Phage ObLaDi
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found ByBrianna Speakar, Renee Box, Kiyara Grosz
Year Found2020
Location FoundLincoln, NE United States
Finding InstitutionUniversity of Nebraska-Lincoln
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature29°C
GPS Coordinates40.8022 N, 96.6836 W Map
Discovery NotesThe phage was collected by Brianna Speaker from the surface of a flower bed from the Sunken Gardens located in Lincoln, Nebraska.
Naming NotesThe phage was named in honor of the classic Beatle's song Ob-La-Di, Ob-La-Da.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 16, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage121
Genome length (bp)86776
Character of genome endsCircularly Permuted
GC Content67.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDZ
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members

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Annotating InstitutionUniversity of California, Los Angeles
Annotation StatusIn GenBank
Plaque NotesPlaques are round, clear, and of a consistent size. They are slightly larger than the tip of a pen.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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ObLaDi_1
(terminase, small subunit)

ObLaDi_2
(helix-turn-helix DNA binding domain)

ObLaDi_3
(terminase, large subunit)

ObLaDi_4
(portal protein)

ObLaDi_5

ObLaDi_6
(scaffolding protein)

ObLaDi_7
(major capsid protein)

ObLaDi_8

ObLaDi_9
(head-to-tail adaptor)

ObLaDi_10
(head-to-tail stopper)

ObLaDi_11

ObLaDi_12
(tail terminator)

ObLaDi_13
(major tail protein)

ObLaDi_14

ObLaDi_15
(tail assembly chaperone)

ObLaDi_16
(tail assembly chaperone)

ObLaDi_17
(tape measure protein)

ObLaDi_18
(minor tail protein)

ObLaDi_19
(minor tail protein)

ObLaDi_20
(HNH endonuclease)

ObLaDi_21
(minor tail protein)

ObLaDi_22
(minor tail protein)

ObLaDi_23

ObLaDi_24

ObLaDi_25
(minor tail protein)

ObLaDi_26

ObLaDi_27
(lysin A, protease C39 domain)

ObLaDi_28
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

ObLaDi_29

ObLaDi_30
(cysteine protease)

ObLaDi_31
(holin)

ObLaDi_32

ObLaDi_33
(lysin B)

ObLaDi_34
(immunity repressor)

ObLaDi_35
(tyrosine integrase)

ObLaDi_36
(IrrE-like protein)

ObLaDi_37
(Cro (control of repressor's operator))

ObLaDi_38
(helix-turn-helix DNA binding domain)

ObLaDi_39
(RecE-like exonuclease)

ObLaDi_40
(RecT-like ssDNA binding protein)

ObLaDi_41

ObLaDi_42

ObLaDi_43
(excise)

ObLaDi_44

ObLaDi_45
(DNA binding protein)

ObLaDi_46

ObLaDi_47
(RepA-like replication initiator)

ObLaDi_48
(helicase loader)

ObLaDi_49
(DnaB-like dsDNA helicase)

ObLaDi_50

ObLaDi_51

ObLaDi_52

ObLaDi_53
(DNA binding protein)

ObLaDi_54
(helix-turn-helix DNA binding domain)

ObLaDi_55
(PnuC-like Nicotinamide riboside transporter)

ObLaDi_56

ObLaDi_57
(lipoprotein)

ObLaDi_58

ObLaDi_59

ObLaDi_60

ObLaDi_61

ObLaDi_62

ObLaDi_63

ObLaDi_64

ObLaDi_65

ObLaDi_66

ObLaDi_67

ObLaDi_68

ObLaDi_69

ObLaDi_70

ObLaDi_71
(DnaQ-like (DNA polymerase III subunit))

ObLaDi_72
(ThyX-like thymidylate synthase)

ObLaDi_73

ObLaDi_74

ObLaDi_75

ObLaDi_76

ObLaDi_77

ObLaDi_78

ObLaDi_79

ObLaDi_80

ObLaDi_81

ObLaDi_82
(DNA binding protein)

ObLaDi_83

ObLaDi_84

ObLaDi_85

ObLaDi_86

ObLaDi_87
(DNA binding protein)

ObLaDi_88
(helix-turn-helix DNA binding domain)

ObLaDi_89

ObLaDi_90

ObLaDi_91
(MazG-like nucleotide pyrophosphohydrolase)

ObLaDi_92
(DnaQ-like (DNA polymerase III subunit))

ObLaDi_93

ObLaDi_94

ObLaDi_95

ObLaDi_96

ObLaDi_97
(metallophosphoesterase)

ObLaDi_98

ObLaDi_99

ObLaDi_100

ObLaDi_101
(ribonucleotide reductase)

ObLaDi_102

ObLaDi_103

ObLaDi_104

ObLaDi_105

ObLaDi_106
(HNH endonuclease)

ObLaDi_107

ObLaDi_108

ObLaDi_109

ObLaDi_110

ObLaDi_111

ObLaDi_112

ObLaDi_113

ObLaDi_114

ObLaDi_115
(ADP-ribosyl glycohydrolase)

ObLaDi_116

ObLaDi_117

ObLaDi_118

ObLaDi_119

ObLaDi_120

ObLaDi_121
(DNA binding protein)

ObLaDi_122

ObLaDi_123

ObLaDi_124

ObLaDi_125

ObLaDi_126

ObLaDi_127

ObLaDi_128

ObLaDi_129

ObLaDi_130
(RuvC-like resolvase)

ObLaDi_131

ObLaDi_132

ObLaDi_133
(ADP-ribosyltransferase)

ObLaDi_134

ObLaDi_135
(DNA binding protein)

ObLaDi_136

ObLaDi_137

ObLaDi_138

ObLaDi_139

ObLaDi_140

ObLaDi_141

ObLaDi_142

ObLaDi_143

ObLaDi_144

ObLaDi_145

ObLaDi_146

ObLaDi_147

ObLaDi_148

ObLaDi_149

ObLaDi_150

ObLaDi_151

ObLaDi_152

ObLaDi_153

ObLaDi_154

ObLaDi_155

ObLaDi_156

ObLaDi_157

ObLaDi_158

ObLaDi_159

ObLaDi_160

ObLaDi_161

ObLaDi_162

ObLaDi_163

ObLaDi_164
(PAPS reductase-like domain)

ObLaDi_165

ObLaDi_166

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOP297535
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 121
Pitt Freezer Box Grid# A8
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload