Detailed Information for Phage Cardigan |
Discovery Information |
Isolation Host | Gordonia terrae 3612 |
Found By | E. Fifo, A. Ravishankar, J. Deleon, B. Glasser |
Year Found | 2022 |
Location Found | Pittsburgh, PA United States |
Finding Institution | University of Pittsburgh |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | No |
Isolation Temperature | 30°C |
GPS Coordinates | 40.2627 N, 79.5738 W Map |
Naming Notes | Our phage name is based off of Taylor Swift's song off of her album "folklore", "cardigan". |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Aug 4, 2023 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Approximate Shotgun Coverage | 552 |
Genome length (bp) | 101418 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | CGCGAAGCTC |
GC Content | 59.9% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | DD |
Subcluster | -- |
Cluster Life Cycle | Unknown |
Other Cluster Members |
|
Annotating Institution | University of Pittsburgh |
Annotation Status | Overdue (Expected completion by 9/2/2024) |
Number of Genes | 205 |
Number of tRNAs | 7 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Publication Info |
Uploaded to GenBank? | No |
GenBank Accession | None yet |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
159 |
Pitt Freezer Box Grid# |
E5 |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |