| Detailed Information for Phage Causa |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Former names | Cholo |
| Found By | Diego Huby |
| Year Found | 2024 |
| Location Found | Holland, MI United States |
| Finding Institution | Hope College |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 34°C |
| GPS Coordinates | 42.7835 N, 86.098472 W Map |
| Discovery Notes | Collected from a compost section behind a barn. Soil moist. 68 deg F temperature. |
| Naming Notes | From the name of one of my favorite foods. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 24, 2025 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 26 |
| Genome length (bp) | 101485 |
| Character of genome ends | Circularly Permuted |
| GC Content | 65.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | AI |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
|
| Annotating Institution | Hope College |
| Annotation Status | Being Annotated (Expected completion by 5/1/2025) |
| Plaque Notes | After 72 hours of incubation at 36°C. The plaque seems to have a dot point clear in the middle and in the surroundings of the circle, it is kind of fuzzy. Also, it has a cloudy halo surrounding that fuzzy
area. With .5 mm diameter. |
| Number of Genes | 180 |
| Number of tRNAs | 17 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Publication Info |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Not in Pitt Archives |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
