Gordonia phage Culver
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Detailed Information for Phage Culver
Discovery Information
Isolation HostGordonia terrae CAG3
Found ByBrandon Stamey
Year Found2017
Location FoundSylva, NC USA
Finding InstitutionWestern Carolina University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates35.3167 N, 83.1648 W Map
Discovery NotesThis sample was found within chicken coop compost
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJul 21, 2020
Sequencing FacilityWestern Carolina University
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage344
Genome length (bp)93062
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGCGACGCTC
GC Content61.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCQ
SubclusterCQ1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of North Carolina at Charlotte
Annotation StatusIn GenBank
Plaque NotesThis phage makes moderately sized, turgid, and uniform plaqes when spotted
Also, this phage has a long tail (~450nm) and moderately sized capsid (79.3nm)
MorphotypeSiphoviridae
Number of Genes182
Number of tRNAs8
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Culver_1

Culver_2

Culver_3

Culver_4

Culver_5

Culver_6

Culver_7

Culver_8

Culver_9

Culver_10

Culver_11

Culver_12

Culver_13
(HNH endonuclease)

Culver_14

Culver_15

Culver_16

Culver_17

Culver_18

Culver_19 — tRNA
(tRNA-?(Val|Arg)(gacg))

Culver_20 — tRNA
(tRNA-Undet(nnn))

Culver_21 — tRNA
(tRNA-Trp(cca))

Culver_22 — tRNA
(tRNA-Tyr(gta))

Culver_23 — tRNA
(tRNA-Ser(cga))

Culver_24 — tRNA
(tRNA-Ser(gct))

Culver_25

Culver_26 — tRNA
(tRNA-Asn(gtt))

Culver_27

Culver_28 — tRNA
(tRNA-Lys(ctt))

Culver_29
(terminase, small subunit)

Culver_30
(terminase, large subunit)

Culver_31
(portal protein)

Culver_32

Culver_33
(scaffolding protein)

Culver_34
(capsid decoration protein, LamD-like)

Culver_35
(major capsid protein)

Culver_36

Culver_37
(head-to-tail adaptor)

Culver_38
(head-to-tail stopper)

Culver_39

Culver_40
(tail terminator)

Culver_41
(endonuclease VII)

Culver_42
(major tail protein)

Culver_43

Culver_44
(tail assembly chaperone)

Culver_45
(tail assembly chaperone)

Culver_46
(tape measure protein)

Culver_47
(minor tail protein)

Culver_48
(minor tail protein)

Culver_49
(lysin A, protease C39 domain)

Culver_50
(lysin A, L-Ala-D-Glu peptidase domain)

Culver_51
(holin)

Culver_52

Culver_53

Culver_54

Culver_55
(minor tail protein)

Culver_56

Culver_57

Culver_58
(minor tail protein)

Culver_59

Culver_60
(tyrosine integrase)

Culver_61
(minor tail protein)

Culver_62
(Lsr2-like DNA bridging protein)

Culver_63

Culver_64

Culver_65
(exonuclease)

Culver_66
(exonuclease)

Culver_67

Culver_68

Culver_69

Culver_70

Culver_71
(metallophosphoesterase)

Culver_72

Culver_73

Culver_74
(rtcB-like RNA ligase)

Culver_75

Culver_76

Culver_77

Culver_78

Culver_79

Culver_80

Culver_81

Culver_82

Culver_83

Culver_84

Culver_85
(tyrosine integrase)

Culver_86

Culver_87
(immunity repressor)

Culver_88

Culver_89
(RecE-like exonuclease)

Culver_90

Culver_91

Culver_92
(RecT-like DNA pairing protein)

Culver_93

Culver_94

Culver_95
(ThyX-like thymidylate synthase)

Culver_96

Culver_97

Culver_98

Culver_99

Culver_100
(helix-turn-helix DNA binding domain)

Culver_101

Culver_102

Culver_103

Culver_104
(helix-turn-helix DNA binding domain)

Culver_105
(RepA-like replication initiator)

Culver_106
(helicase loader)

Culver_107

Culver_108

Culver_109

Culver_110

Culver_111

Culver_112

Culver_113

Culver_114

Culver_115

Culver_116

Culver_117

Culver_118

Culver_119

Culver_120

Culver_121

Culver_122

Culver_123
(DNA primase/helicase)

Culver_124

Culver_125
(NrdH-like glutaredoxin)

Culver_126
(SSB protein)

Culver_127

Culver_128
(WhiB family transcription factor)

Culver_129

Culver_130

Culver_131

Culver_132

Culver_133
(endonuclease VII)

Culver_134

Culver_135

Culver_136
(nucleotidyl transferase)

Culver_137

Culver_138

Culver_139

Culver_140

Culver_141

Culver_142

Culver_143

Culver_144
(5' nucleotidase)

Culver_145

Culver_146
(deoxycytidylate deaminase)

Culver_147

Culver_148
(lysin B)

Culver_149

Culver_150

Culver_151

Culver_152
(helix-turn-helix DNA binding domain)

Culver_153

Culver_154

Culver_155

Culver_156

Culver_157

Culver_158

Culver_159

Culver_160

Culver_161

Culver_162

Culver_163

Culver_164

Culver_165

Culver_166

Culver_167

Culver_168

Culver_169

Culver_170

Culver_171

Culver_172

Culver_173

Culver_174

Culver_175

Culver_176

Culver_177

Culver_178

Culver_179

Culver_180

Culver_181

Culver_182

Culver_183

Culver_184

Culver_185

Culver_186

Culver_187

Culver_188

Culver_189

Culver_190

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOR475265
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 68
Pitt Freezer Box Grid# H4
Available Files
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload