| Detailed Information for Phage Doggs | |
| Discovery Information | |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Erin Bogler, Dylan Leonard |
| Year Found | 2019 |
| Location Found | Canonsburg, PA United States of America |
| Finding Institution | University of Pittsburgh |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 30°C |
| GPS Coordinates | 40.263139, -80.192528 Map |
| Discovery Notes | Ground was dry because of high temps and little rain. Dirt came from surface level near shrubs and flowers. Soil was kept in the refrigerator from the time is was picked top until it was used. Small animals like rabbits, moles, birds and bugs live near this soil. |
| Naming Notes | Name was obtained as a combination of lab partners names. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 27, 2020 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 1118 |
| Genome length (bp) | 45384 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | TCCCGCGGTA |
| GC Content | 66.4% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | DB |
| Subcluster | -- |
| Cluster Life Cycle | Temperate |
| Other Cluster Members | |
| Annotating Institution | University of South Florida |
| Annotation Status | In GenBank |
| Plaque Notes | 55 nm capsid diameter and 310 nm tail length. |
| Morphotype | Siphoviridae |
| Number of Genes | 64 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewDoggs_1 Doggs_2 Doggs_3 Doggs_4 Doggs_5 Doggs_6 Doggs_7 Doggs_8 Doggs_9 Doggs_10 Doggs_11 Doggs_12 Doggs_13 Doggs_14 Doggs_15 Doggs_16 Doggs_17 Doggs_18 Doggs_19 Doggs_20 Doggs_21 Doggs_22 Doggs_23 Doggs_24 Doggs_25 Doggs_26 Doggs_27 Doggs_28 Doggs_29 Doggs_30 Doggs_31 Doggs_32 Doggs_33 Doggs_34 Doggs_35 Doggs_36 Doggs_37 Doggs_38 Doggs_39 Doggs_40 Doggs_41 Doggs_42 Doggs_43 Doggs_44 Doggs_45 Doggs_46 Doggs_47 Doggs_48 Doggs_49 Doggs_50 Doggs_51 Doggs_52 Doggs_53 Doggs_54 Doggs_55 Doggs_56 Doggs_57 Doggs_58 Doggs_59 Doggs_60 Doggs_61 Doggs_62 Doggs_63 Doggs_64 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MT498059 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 6.67 x 10^11 |
| Pitt Freezer Box# | 114 |
| Pitt Freezer Box Grid# | B6 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
