Gordonia phage DonTron
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Detailed Information for Phage DonTron
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found ByAlyssa Williams
Year Found2023
Location FoundNew Albany, IN United States
Finding InstitutionIndiana University-Southeast
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature26°C
GPS Coordinates38.34724 N, 85.82167 W Map
Discovery NotesAlyssa found this sample location on the Bicentennial trail on campus. Its exact GPS coordinates are 38.347.24 degrees north, and 85.82167 degrees west. It was 90 degrees Fahrenheit outside and sunny. The soil was dug from about 2 inches in the ground. It was by a freshly fallen tree. The soil was dry and loose. It contained roots and tiny twigs and was light brown with a sandy texture
Naming Notes"DonTron" came from a TV show called Rise: of the TMNT. It is a character named Donnie's nickname in the show, and we thought that it would be a good name for our phage instead of just our initials.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 2, 2024
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina MiSeq
Read TypeSingle-end reads
Read Length150 bp
Approximate Shotgun Coverage163
Genome length (bp)58182
Character of genome endsCircularly Permuted
GC Content65.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCP
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members
Annotating InstitutionUniversity of Lagos
Annotation StatusIn GenBank
Plaque NotesThe plaques of our phage are transparent and range from 1mm –2mm in diameter. We have a lot of variability between our plaques. For example, we have some that are more rectangular with rough edges and some that are completely round with even edges.
Number of Genes91
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

DonTron_1

DonTron_2
(terminase)

DonTron_3

DonTron_4

DonTron_5

DonTron_6

DonTron_7
(helix-turn-helix DNA binding domain protein)

DonTron_8

DonTron_9

DonTron_10

DonTron_11

DonTron_12

DonTron_13
(RusA-like resolvase)

DonTron_14

DonTron_15
(DnaQ-like (DNA polymerase III subunit))

DonTron_16

DonTron_17
(helix-turn-helix DNA binding domain protein)

DonTron_18

DonTron_19

DonTron_20

DonTron_21

DonTron_22
(HNH endonuclease)

DonTron_23

DonTron_24

DonTron_25

DonTron_26

DonTron_27

DonTron_28

DonTron_29

DonTron_30
(ParB N-terminal-like domain)

DonTron_31

DonTron_32

DonTron_33

DonTron_34

DonTron_35

DonTron_36

DonTron_37

DonTron_38

DonTron_39

DonTron_40

DonTron_41
(portal protein)

DonTron_42
(capsid maturation protease)

DonTron_43

DonTron_44
(major capsid hexamer protein)

DonTron_45
(major capsid pentamer protein)

DonTron_46

DonTron_47

DonTron_48

DonTron_49
(major tail protein)

DonTron_50
(head-to-tail adaptor)

DonTron_51

DonTron_52

DonTron_53
(tail assembly chaperone)

DonTron_54
(tail assembly chaperone)

DonTron_55

DonTron_56
(tape measure protein)

DonTron_57
(minor tail protein)

DonTron_58
(minor tail protein)

DonTron_59

DonTron_60

DonTron_61

DonTron_62

DonTron_63
(minor tail protein)

DonTron_64

DonTron_65
(endolysin)

DonTron_66
(holin)

DonTron_67

DonTron_68

DonTron_69

DonTron_70

DonTron_71

DonTron_72
(helix-turn-helix DNA binding domain protein)

DonTron_73

DonTron_74

DonTron_75
(helix-turn-helix DNA binding domain protein)

DonTron_76

DonTron_77

DonTron_78

DonTron_79

DonTron_80

DonTron_81

DonTron_82
(Cas4 exonuclease)

DonTron_83
(ASCE ATPase)

DonTron_84

DonTron_85

DonTron_86
(SSB protein)

DonTron_87
(HNH endonuclease)

DonTron_88
(HNH endonuclease)

DonTron_89

DonTron_90

DonTron_91
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPX315707
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 184
Pitt Freezer Box Grid# A1
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload