Gordonia phage DumpsterDude
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Detailed Information for Phage DumpsterDude
Discovery Information
Isolation HostGordonia terrae NRRL B-16283
Former namesNchlsDmpstr
Found ByChristian Hines
Year Found2018
Location FoundDurham, NC USA
Finding InstitutionDurham Technical Community College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature29°C
GPS Coordinates35.975387, -78.881359 Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedApr 12, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage79
Genome length (bp)52018
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTGCCGAGGTA
GC Content66.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDW
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members

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Annotating InstitutionMount Saint Mary College
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes71
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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DumpsterDude_1
(terminase small subunit)

DumpsterDude_2
(terminase large subunit)

DumpsterDude_3
(portal protein)

DumpsterDude_4
(capsid maturation protease)

DumpsterDude_5
(scaffolding protein)

DumpsterDude_6
(major capsid protein)

DumpsterDude_7

DumpsterDude_8

DumpsterDude_9
(head-to-tail adaptor)

DumpsterDude_10
(head-to-tail stopper)

DumpsterDude_11
(tail terminator)

DumpsterDude_12

DumpsterDude_13
(major tail protein)

DumpsterDude_14

DumpsterDude_15
(tail assembly chaperone)

DumpsterDude_16
(tail assembly chaperone)

DumpsterDude_17
(tape measure protein)

DumpsterDude_18
(minor tail protein)

DumpsterDude_19
(minor tail protein)

DumpsterDude_20
(minor tail protein)

DumpsterDude_21
(minor tail protein)

DumpsterDude_22
(minor tail protein)

DumpsterDude_23
(minor tail protein)

DumpsterDude_24

DumpsterDude_25
(lysin A)

DumpsterDude_26
(holin)

DumpsterDude_27

DumpsterDude_28

DumpsterDude_29
(lysin B)

DumpsterDude_30

DumpsterDude_31
(hydrolase)

DumpsterDude_32

DumpsterDude_33

DumpsterDude_34

DumpsterDude_35

DumpsterDude_36

DumpsterDude_37
(ribbon-helix-helix DNA binding domain protein)

DumpsterDude_38
(BrnT-like toxin)

DumpsterDude_39

DumpsterDude_40
(tyrosine integrase)

DumpsterDude_41
(helix-turn-helix DNA binding domain protein)

DumpsterDude_42
(peptidase)

DumpsterDude_43

DumpsterDude_44

DumpsterDude_45
(immunity repressor)

DumpsterDude_46
(helix-turn-helix DNA binding domain protein)

DumpsterDude_47

DumpsterDude_48
(antirepressor)

DumpsterDude_49
(excise)

DumpsterDude_50

DumpsterDude_51

DumpsterDude_52

DumpsterDude_53

DumpsterDude_54

DumpsterDude_55
(RecE-like exonuclease)

DumpsterDude_56
(RecT-like ssDNA binding protein)

DumpsterDude_57

DumpsterDude_58

DumpsterDude_59

DumpsterDude_60

DumpsterDude_61

DumpsterDude_62
(HNH endonuclease)

DumpsterDude_63
(helix-turn-helix DNA binding domain protein)

DumpsterDude_64

DumpsterDude_65

DumpsterDude_66
(methyltransferase)

DumpsterDude_67

DumpsterDude_68
(RusA-like resolvase)

DumpsterDude_69

DumpsterDude_70
(HNH endonuclease)

DumpsterDude_71

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT024859
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 79
Pitt Freezer Box Grid# A11
Available Files
EM PictureDownload
GenBank File for PhameratorDownload