The Actinobacteriophage Database

Add or modify phage thumbnail images to appear at the top of this page.

Know something about this phage that we don't? Modify its data.

Detailed Information for Phage Kinbote
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	David Dittrich
Year Found	2013
Location Found	Williamsburg, VA USA
Finding Institution	College of William & Mary
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Yes
Isolation Temperature	Not entered
GPS Coordinates	37.271389 N, 76.721944 W Map
Discovery Notes	Titer: 64.e+9 pfu/ml
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Jan 9, 2014
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina
Approximate Shotgun Coverage	2027
Genome length (bp)	53746
Character of genome ends	3' Sticky Overhang
Overhang Length	14 bases
Overhang Sequence	TAAGCCGCGCGGTA
GC Content	67.4%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	Q
Subcluster	--
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View Amochick Amymech Daegal DeepSoil15 Dewey Ein37 Evanesce Forge Gancho Giles Gravaillia Hadrien Hail HH92 Kinbote LilHazelnut Luke Luna22 OBUpride Ubuntu Webster2 Wishmaker
Annotating Institution	Unknown or unassigned
Annotation Status	In GenBank
Morphotype	Siphoviridae
Number of Genes	84
Number of tRNAs	0
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View Kinbote_1 (terminase small subunit) Kinbote_2 Kinbote_3 Kinbote_4 Kinbote_5 (terminase large subunit) Kinbote_6 (portal protein) Kinbote_7 (capsid maturation protease) Kinbote_8 (scaffolding protein) Kinbote_9 (major capsid protein) Kinbote_10 (head-to-tail connector) Kinbote_11 (head-to-tail connector) Kinbote_12 (head-to-tail connector) Kinbote_13 (head-to-tail connector) Kinbote_14 (head-to-tail connector) Kinbote_15 (major tail subunit) Kinbote_16 Kinbote_17 Kinbote_18 Kinbote_19 Kinbote_20 (tape measure protein) Kinbote_21 (distal tail protein) Kinbote_22 (minor tail protein) Kinbote_23 Kinbote_24 Kinbote_25 Kinbote_26 Kinbote_27 Kinbote_28 Kinbote_29 (integrase) Kinbote_30 (excise protein) Kinbote_31 Kinbote_32 (lysin A) Kinbote_33 (lysin B) Kinbote_34 Kinbote_35 Kinbote_36 Kinbote_37 Kinbote_38 Kinbote_39 Kinbote_40 Kinbote_41 Kinbote_42 Kinbote_43 Kinbote_44 Kinbote_45 Kinbote_46 Kinbote_47 Kinbote_48 Kinbote_49 Kinbote_50 Kinbote_51 Kinbote_52 Kinbote_53 (HTH DNA binding protein) Kinbote_54 (RecE-like protein) Kinbote_55 (RecT-like protein) Kinbote_56 Kinbote_57 Kinbote_58 Kinbote_59 Kinbote_60 Kinbote_61 Kinbote_62 Kinbote_63 (DNA polymerase) Kinbote_64 Kinbote_65 (methyltransferase) Kinbote_66 Kinbote_67 Kinbote_68 Kinbote_69 Kinbote_70 Kinbote_71 Kinbote_72 (RuvC-like protein) Kinbote_73 (WhiB) Kinbote_74 (HTH DNA-binding protein) Kinbote_75 Kinbote_76 Kinbote_77 Kinbote_78 Kinbote_79 Kinbote_80 Kinbote_81 (HNH endonuclease) Kinbote_82 Kinbote_83 Kinbote_84
Submitted Annotation in DNA Master Format	Download
Author List	Download
Annotation Cover Sheet	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	KT222940
Refseq Number	None yet
Published in Paper	Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	3
Pitt Freezer Box Grid#	G9

Click to View

Click to View