| Detailed Information for Phage Pumpernickel |
| Discovery Information |
| Isolation Host | Microbacterium paraoxydans NRRL B-14843 |
| Found By | Ethan Heelein |
| Year Found | 2019 |
| Location Found | River Falls, WI United States |
| Finding Institution | University of Wisconsin-River Falls |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 28°C |
| GPS Coordinates | 44.851389 N, 92.615556 W Map |
| Discovery Notes | The soil sample was collected from marshy soil near the Ames Suits Dorms on the University of Wisconsin River Falls Campus |
| Naming Notes | Was looking for a fun name that started with a P. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 24, 2020 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 358 |
| Genome length (bp) | 186095 |
| Character of genome ends | Direct Terminal Repeat |
| Direct Terminal Repeat Length | 19963 bp |
| GC Content | 56.2% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | GD |
| Subcluster | GD4 |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
|
| Annotating Institution | University of Wisconsin-River Falls |
| Annotation Status | In GenBank |
| Plaque Notes | The Overall morphology were consistently small in size, places were perfectly clear. |
| Morphotype | Siphoviridae |
| Number of Genes | 312 |
| Number of tRNAs | 41 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Minimal DNA Master File | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | OK040790 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
102 |
| Pitt Freezer Box Grid# |
G12 |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
