Gordonia phage Pupper
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Detailed Information for Phage Pupper
Discovery Information
Isolation HostGordonia terrae 3612
Found ByJustin Antonucci
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature3°C
GPS Coordinates40.444815 N, 79.953835 W Map
Discovery NotesFound underneath light snow in semi frozen soil.
Naming NotesPuppers are doggos and doggos are best
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 6, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage818
Genome length (bp)150830
Character of genome endsCircularly Permuted
GC Content66.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDO
Subcluster--
Cluster Life CycleLytic
Lysogeny Notesnone
Other Cluster Members

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Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesSmall clear Plaques, generally uniform in size
MorphotypeMyoviridae
Has been Phamerated?Yes
Gene List

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Pupper_1

Pupper_2

Pupper_3

Pupper_4

Pupper_5

Pupper_6

Pupper_7
(nicotinate ribosyltransferase)

Pupper_8

Pupper_9

Pupper_10

Pupper_11

Pupper_12

Pupper_13

Pupper_14

Pupper_15

Pupper_16

Pupper_17

Pupper_18

Pupper_19

Pupper_20

Pupper_21

Pupper_22

Pupper_23

Pupper_24

Pupper_25

Pupper_26

Pupper_27

Pupper_28

Pupper_29

Pupper_30

Pupper_31

Pupper_32

Pupper_33

Pupper_34

Pupper_35

Pupper_36

Pupper_37

Pupper_38

Pupper_39

Pupper_40

Pupper_41

Pupper_42

Pupper_44

Pupper_45

Pupper_46

Pupper_47

Pupper_48

Pupper_49

Pupper_50

Pupper_51

Pupper_52

Pupper_53
(WhiB family transcription factor)

Pupper_54

Pupper_55

Pupper_56

Pupper_57

Pupper_58

Pupper_59

Pupper_60

Pupper_61

Pupper_62

Pupper_63
(ThyX-like thymidylate synthase)

Pupper_64

Pupper_65

Pupper_66

Pupper_67

Pupper_68

Pupper_69

Pupper_70

Pupper_71

Pupper_72

Pupper_73

Pupper_74

Pupper_75

Pupper_76

Pupper_77
(thioredoxin)

Pupper_78

Pupper_79

Pupper_80
(histidine triad nucleotide binding protein)

Pupper_81

Pupper_82

Pupper_83

Pupper_84

Pupper_85

Pupper_86
(methyltransferase)

Pupper_87

Pupper_88
(portal protein)

Pupper_89

Pupper_90
(ThyX-like thymidylate synthase)

Pupper_91

Pupper_92
(RNA ligase)

Pupper_93

Pupper_94
(capsid maturation protease)

Pupper_95

Pupper_96
(major capsid protein)

Pupper_97

Pupper_98

Pupper_99

Pupper_100

Pupper_101

Pupper_102

Pupper_103

Pupper_104

Pupper_105

Pupper_106

Pupper_107

Pupper_108

Pupper_109

Pupper_110

Pupper_111

Pupper_112

Pupper_113
(tail sheath protein)

Pupper_114
(endonuclease)

Pupper_115

Pupper_116

Pupper_117
(tail assembly chaperone)

Pupper_118
(tail assembly chaperone)

Pupper_119
(tape measure protein)

Pupper_120

Pupper_121

Pupper_122

Pupper_123

Pupper_124

Pupper_125

Pupper_126

Pupper_127

Pupper_128

Pupper_129
(baseplate wedge protein)

Pupper_130
(baseplate wedge protein)

Pupper_131

Pupper_132

Pupper_133

Pupper_134
(helicase)

Pupper_135

Pupper_136

Pupper_137

Pupper_138

Pupper_139

Pupper_140

Pupper_141

Pupper_142

Pupper_143

Pupper_144
(aminotransferase)

Pupper_145

Pupper_146
(DnaC-like helicase loader)

Pupper_147
(DnaB-like dsDNA helicase)

Pupper_148
(DNA primase)

Pupper_149

Pupper_150
(DnaJ-like chaperonin)

Pupper_151
(ssDNA-binding protein)

Pupper_152

Pupper_153
(DnaE-like DNA polymerase III subunit alpha)

Pupper_154
(RecA-like DNA recombinase)

Pupper_155
(holliday junction resolvase)

Pupper_156
(Cas4 family exonuclease)

Pupper_157

Pupper_158

Pupper_159

Pupper_160

Pupper_161

Pupper_162

Pupper_163

Pupper_164

Pupper_165

Pupper_166

Pupper_167

Pupper_168
(HNH endonuclease)

Pupper_169

Pupper_170

Pupper_171
(lysin A, peptidase domain)

Pupper_172
(lysin A, glycosyl hydrolase domain)

Pupper_173
(holin)

Pupper_174
(terminase)

Pupper_175

Pupper_176

Pupper_177
(lysin B)

Pupper_178
(RuvC-like resolvase)

Pupper_179

Pupper_180

Pupper_181

Pupper_182

Pupper_183

Pupper_184
(helix-turn-helix DNA binding protein)

Pupper_185

Pupper_186
(HicA-like toxin)

Pupper_187

Pupper_188

Pupper_189

Pupper_190

Pupper_191

Pupper_192

Pupper_193

Pupper_194

Pupper_195

Pupper_196

Pupper_197

Pupper_198

Pupper_199

Pupper_200

Pupper_201

Pupper_202

Pupper_203

Pupper_204

Pupper_205

Pupper_206

Pupper_207

Pupper_208

Pupper_209

Pupper_210

Pupper_211

Pupper_212

Pupper_213

Pupper_214

Pupper_215

Pupper_216

Pupper_217

Pupper_218

Pupper_219

Pupper_220

Pupper_221

Pupper_222

Pupper_223

Pupper_224

Pupper_225

Pupper_226

Pupper_227
(helix-turn-helix DNA binding protein)

Pupper_228

Pupper_229

Pupper_230

Pupper_231

Pupper_232

Pupper_233

Pupper_234

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK977695
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 5x10^9 PFU/mL
Date of SEA Lysate Titering Mar 14, 2016
Pitt Freezer Box# 3
Pitt Freezer Box Grid# G1
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload