| Detailed Information for Phage Rabbitrun |
| Discovery Information |
| Isolation Host | Gordonia terrae CAG3 |
| Found By | Charles Caudill |
| Year Found | 2019 |
| Location Found | Junction City, KS USA |
| Finding Institution | Kansas State University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 23°C |
| GPS Coordinates | 39.0458 N, 96.963 W Map |
| Discovery Notes | Soil was from a pond that was dredged a year earlier. Soil was moist with some weedy plants growing in it. Sample from a 5cm depth.
Head Dimensions:61.9X 71.2
Tail length:323.8nm |
| Naming Notes | Name comes from the name of the property it was found on. Many cottontail rabbits call the property home. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 22, 2020 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 629 |
| Genome length (bp) | 76821 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 11 bases |
| Overhang Sequence | ATCTGCCTCAC |
| GC Content | 58.8% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | DU |
| Subcluster | DU2 |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
|
| Annotating Institution | Kansas State University |
| Annotation Status | In GenBank |
| Plaque Notes | 1) Type-Bulleyes
2) Diameter- 1-3mm
3) Size Consistency-varies |
| Morphotype | Siphoviridae |
| Number of Genes | 132 |
| Number of tRNAs | 6 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MT658805 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| SEA Lysate Titer |
4x10^9 |
| Pitt Freezer Box# |
109 |
| Pitt Freezer Box Grid# |
E3 |
| Available Files |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
