| Detailed Information for Phage Riparian |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Vanessa Cadiz, Kevin Ayala-Pineda, Renzo Costa |
| Year Found | 2017 |
| Location Found | Las Vegas , NV USA |
| Finding Institution | University of Nevada Las Vegas |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 36.103961 N, 115.020223 W Map |
| Discovery Notes | The phage was discovered at the wetlands park near a pond. There were several plants and bushes near the location it was dug up. The soil was damp and conditions were near 90 degrees Celsius 9.3cm of soil was dug up. |
| Naming Notes | A riparium is a cluster of plants found along the edges of lakes, rivers, pond and streams. Since the area of phage discovery had several plants and it was next to a pond, Riparium is a perfect name. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 12, 2018 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 1158 |
| Genome length (bp) | 71199 |
| Character of genome ends | Circularly Permuted |
| GC Content | 56.0% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | R |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | University of Nevada Las Vegas |
| Annotation Status | In GenBank |
| Plaque Notes | Riparium plaques are extremely small All plaques have a dark shade on the outer circumference. |
| Morphotype | Siphoviridae |
| Number of Genes | 101 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MH926059 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
52 |
| Pitt Freezer Box Grid# |
D4 |
| Available Files |
| GenBank File for Phamerator | Download |