Gordonia phage Ruthy
Ruthy Plaque Picture
Ruthy EM Picture
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(G. terrae 3612)
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Detailed Information for Phage Ruthy
Discovery Information
Isolation HostGordonia terrae 3612
Found ByKeller Smith, Abby Walker, Austin Mullins
Year Found2017
Location FoundEast End, AR USA
Finding InstitutionOuachita Baptist University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates34.5687 N, 92.3709 W Map
Naming NotesThe name of our lab professor, Ruth.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 6, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage371
Genome length (bp)51265
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTGCCGAGGTA
GC Content66.7%
Sequencing NotesSequenced as part of a deliberately mixed sample along with Ribeye.
Fasta file available?Yes: Download fasta file
Characterization
ClusterDW
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members

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DumpsterDude

Malibo

Ruthy
Annotating InstitutionOuachita Baptist University
Annotation StatusIn GenBank
Plaque Notescloudy plaques about 2mm across
Number of Genes73
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Ruthy_1
(terminase small subunit)

Ruthy_2
(terminase large subunit)

Ruthy_3
(portal protein)

Ruthy_4
(capsid maturation protease)

Ruthy_5
(scaffolding protein)

Ruthy_6
(major capsid protein)

Ruthy_7

Ruthy_8

Ruthy_9
(head-to-tail connector complex protein)

Ruthy_10
(head-to-tail connector complex protein)

Ruthy_11
(head-to-tail connector complex protein)

Ruthy_12

Ruthy_13
(major tail protein)

Ruthy_14

Ruthy_15
(tail assembly chaperone)

Ruthy_16
(tail assembly chaperone)

Ruthy_17
(tape measure protein)

Ruthy_18
(minor tail protein)

Ruthy_19
(minor tail protein)

Ruthy_20
(minor tail protein)

Ruthy_21
(minor tail protein)

Ruthy_22
(minor tail protein)

Ruthy_23

Ruthy_24
(lysin A, L-Ala-D-Glu peptidase domain)

Ruthy_25
(lysin A, glycosyl hydrolase domain)

Ruthy_26

Ruthy_27
(holin)

Ruthy_28

Ruthy_29
(lysin B)

Ruthy_30
(minor tail protein)

Ruthy_31
(minor tail protein)

Ruthy_32
(minor tail protein)

Ruthy_33

Ruthy_34

Ruthy_35
(RelB-like antitoxin)

Ruthy_36
(RelE-like toxin)

Ruthy_37

Ruthy_38

Ruthy_39
(integrase)

Ruthy_40
(helix-turn-helix DNA-binding domain protein)

Ruthy_41
(peptidase)

Ruthy_42

Ruthy_43
(immunity repressor)

Ruthy_44
(helix-turn-helix DNA-binding domain protein)

Ruthy_45

Ruthy_46
(antirepressor)

Ruthy_47
(excise)

Ruthy_48

Ruthy_49

Ruthy_50

Ruthy_51

Ruthy_52

Ruthy_53

Ruthy_54
(exonuclease)

Ruthy_55
(ssDNA-binding protein)

Ruthy_56

Ruthy_57

Ruthy_58
(DnaQ-like DNA polymerase III subunit)

Ruthy_59

Ruthy_60

Ruthy_61

Ruthy_62
(DNA methylase)

Ruthy_63
(helix-turn-helix DNA-binding domain protein)

Ruthy_64

Ruthy_65

Ruthy_66
(methyltransferase)

Ruthy_67

Ruthy_68

Ruthy_69
(helix-turn-helix DNA-binding domain protein)

Ruthy_70
(RusA-like resolvase)

Ruthy_71
(helix-turn-helix DNA-binding domain protein)

Ruthy_72
(HNH endonuclease)

Ruthy_73
Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH536826
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 3.2x10^9 pfu/mL
Pitt Freezer Box# 48
Pitt Freezer Box Grid# F4
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload