Gordonia phage Schiebs
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| Detailed Information for Phage Schiebs | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Johnathon Schiebel |
| Year Found | 2016 |
| Location Found | Cabot, PA USA |
| Finding Institution | University of Pittsburgh |
| Program | Phage Hunters Integrating Research and Education |
| From enriched soil sample? | Yes |
| Isolation Temperature | 30°C |
| GPS Coordinates | 40.79814 N, 79.761075 W Map |
| Discovery Notes | The phage soil sample was collected from 210 Star Grill Rd. in Cabot PA. Soil originated from a compost pile and was collected on March 26, 2016 at 2:50pm. Weather was cloudy and 62 degrees Fahrenheit. It had rained the day before. Soil was from about 2 inches deep in the compost pile and was moist and dark brown in color. Some plant vegetation was visible in the sample. |
| Naming Notes | My nickname |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jul 28, 2016 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 3688 |
| Genome length (bp) | 14646 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CCCGCGCCCA |
| GC Content | 70.6% |
| Sequencing Notes | at position 9395 bp approximately 20% of reads contain an A instead of consensus C at positions 12636-12637 bp or at positions 12638-12639 bp approximately 30% of reads contain a TG deletion |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | CW |
| Subcluster | CW3 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members | |
| Annotating Institution | University of Pittsburgh |
| Annotation Status | In GenBank |
| Morphotype | Siphoviridae |
| Number of Genes | 25 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewSchiebs_1 Schiebs_2 Schiebs_3 Schiebs_4 Schiebs_5 Schiebs_6 Schiebs_7 Schiebs_8 Schiebs_9 Schiebs_10 Schiebs_11 Schiebs_12 Schiebs_13 Schiebs_14 Schiebs_15 Schiebs_16 Schiebs_17 Schiebs_18 Schiebs_19 Schiebs_20 Schiebs_21 Schiebs_22 Schiebs_23 Schiebs_24 Schiebs_25 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MN234213 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 5 |
| Pitt Freezer Box Grid# | D11 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| Final DNAMaster File | Download |
| GenBank File for Phamerator | Download |