Detailed Information for Phage ZoeJ |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Former names | ZoeGene2012, ZoeGene |
Found By | Seth Pinches |
Year Found | 2012 |
Location Found | Providence, RI USA |
Finding Institution | Providence College |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | Not entered |
GPS Coordinates | 41.8441 N, 71.438 W Map |
Discovery Notes | Dense Compact soil. Soil Contained rocks and had a small amount of leaf coverage. The soil was found under a tree with small red berries. The soil itself was deep, interrupted with roots and within 10 meters of grass. |
Naming Notes | The phage was named after my newborn niece Zoe Jean. |
Mutants |
Mutants of this Phage |
|
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 17, 2013 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Ion Torrent |
Approximate Shotgun Coverage | 640 |
Genome length (bp) | 57315 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | CTCGCGGCAT |
GC Content | 68.5% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | K |
Subcluster | K2 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | Providence College |
Annotation Status | In GenBank |
Plaque Notes | The plaques were clear and oval and were approximately 4 mm in diameter |
Morphotype | Siphoviridae |
Number of Genes | 92 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | KJ510412 |
Refseq Number | NC_024147 |
Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
Archiving Info |
Archiving status |
Archived |
SEA Designator |
2012PROVzoegeneRSP |
Pitt Freezer Box# |
3 |
Pitt Freezer Box Grid# |
D7 |
Available Files |
Plaque Picture | Download |
EM Picture | Download |