Gordonia phage Sephiroth
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Detailed Information for Phage Sephiroth
Discovery Information
Isolation HostGordonia terrae NRRL B-16283
Found BySean Brunner (adopted)
Year Found2019
Location FoundDurham, NC USA
Finding InstitutionDurham Technical Community College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates35.975426 N, 78.880926 W Map
Discovery NotesFound in a mud area beside pond at DuKe Gardens
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 31, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage321
Genome length (bp)76058
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceATCTGCGCCCC
GC Content58.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDU
SubclusterDU1
Cluster Life CycleUnknown
Other Cluster Members
Annotating InstitutionDurham Technical Community College
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes131
Number of tRNAs6
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Sephiroth_1

Sephiroth_2

Sephiroth_3

Sephiroth_4

Sephiroth_5

Sephiroth_6
(helix-turn-helix DNA binding domain protein)

Sephiroth_7
(tyrosine integrase)

Sephiroth_8

Sephiroth_9

Sephiroth_10

Sephiroth_11

Sephiroth_12
(terminase small subunit)

Sephiroth_13
(terminase large subunit)

Sephiroth_14
(portal protein)

Sephiroth_15
(MuF-like minor capsid protein)

Sephiroth_16
(scaffolding protein)

Sephiroth_17
(major capsid protein)

Sephiroth_18
(head-to-tail adaptor)

Sephiroth_19
(head-to-tail stopper)

Sephiroth_20

Sephiroth_21
(tail terminator)

Sephiroth_22
(major tail protein)

Sephiroth_23
(tail assembly chaperone)

Sephiroth_24
(tail assembly chaperone)

Sephiroth_25

Sephiroth_26
(tape measure protein)

Sephiroth_27
(minor tail protein)

Sephiroth_28
(minor tail protein)

Sephiroth_29

Sephiroth_30
(minor tail protein)

Sephiroth_31

Sephiroth_32
(minor tail protein)

Sephiroth_33

Sephiroth_34
(lysin A, protease C39 domain)

Sephiroth_35
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

Sephiroth_36

Sephiroth_37

Sephiroth_38
(Lsr2-like DNA bridging protein)

Sephiroth_39

Sephiroth_40

Sephiroth_41

Sephiroth_42
(immunity repressor)

Sephiroth_43
(helix-turn-helix DNA binding domain protein)

Sephiroth_44

Sephiroth_45

Sephiroth_46

Sephiroth_47

Sephiroth_48

Sephiroth_49

Sephiroth_50

Sephiroth_51

Sephiroth_52
(band-7-like membrane protein)

Sephiroth_53
(MazG-like nucleotide pyrophosphohydrolase)

Sephiroth_54

Sephiroth_55

Sephiroth_56

Sephiroth_57
(exonuclease)

Sephiroth_58

Sephiroth_59
(ERF family ssDNA binding protein)

Sephiroth_60

Sephiroth_61

Sephiroth_62

Sephiroth_63

Sephiroth_64

Sephiroth_65
(WhiB family transcription factor)

Sephiroth_66
(WhiB family transcription factor)

Sephiroth_67
(helix-turn-helix DNA binding domain protein)

Sephiroth_68

Sephiroth_69

Sephiroth_70

Sephiroth_71

Sephiroth_72

Sephiroth_73
(HNH endonuclease)

Sephiroth_74

Sephiroth_75

Sephiroth_76

Sephiroth_77
(DnaB-like dsDNA helicase)

Sephiroth_78

Sephiroth_79
(ssDNA-binding protein)

Sephiroth_80

Sephiroth_81

Sephiroth_82

Sephiroth_83
(RusA-like resolvase)

Sephiroth_84

Sephiroth_85

Sephiroth_86
(polynucleotide kinase)

Sephiroth_87

Sephiroth_88
(RNA ligase)

Sephiroth_89
(phosphoribosyl pyrophosphate transferase)

Sephiroth_90
(nicotinate ribosyltransferase)

Sephiroth_91

Sephiroth_92
(nucleotidyl transferase)

Sephiroth_93
(helix-turn-helix DNA binding domain protein)

Sephiroth_94 — tRNA
(tRNA-Asn(gtt))

Sephiroth_95 — tRNA
(tRNA-?(Trp|Leu)(ccag); tRNA-?(Trp|Leu)(ccag))

Sephiroth_96 — tRNA
(tRNA-Gly(tcc))

Sephiroth_97 — tRNA
(tRNA-Lys(ctt))

Sephiroth_98 — tRNA
(tRNA-Leu(caa))

Sephiroth_99

Sephiroth_100

Sephiroth_101

Sephiroth_102

Sephiroth_103 — tRNA
(tRNA-Tyr(gta))

Sephiroth_104

Sephiroth_105

Sephiroth_106
(ThyX-like thymidylate synthase)

Sephiroth_107

Sephiroth_108

Sephiroth_109
(ribonucleotide reductase)

Sephiroth_110
(NrdH-like glutaredoxin)

Sephiroth_111

Sephiroth_112
(exonuclease)

Sephiroth_113

Sephiroth_114

Sephiroth_115

Sephiroth_116
(lysin B)

Sephiroth_117

Sephiroth_118
(AAA-ATPase)

Sephiroth_119
(glycosyltransferase)

Sephiroth_120

Sephiroth_121
(galactosyltransferase)

Sephiroth_122
(glycosyltransferase)

Sephiroth_123
(HNH endonuclease)

Sephiroth_124

Sephiroth_125

Sephiroth_126

Sephiroth_127

Sephiroth_128
(helix-turn-helix DNA binding domain protein)

Sephiroth_129

Sephiroth_130

Sephiroth_131

Sephiroth_132

Sephiroth_133

Sephiroth_134

Sephiroth_135
(AAA-ATPase)

Sephiroth_136

Sephiroth_137

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT684599
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 107
Pitt Freezer Box Grid# D10
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload