Detailed Information for Phage Splinter |
Discovery Information |
Isolation Host | Gordonia terrae 3612 |
Found By | Carlos Guerrero |
Year Found | 2013 |
Location Found | Pittsburgh, PA USA |
Finding Institution | University of Pittsburgh |
Program | Phage Hunters Integrating Research and Education |
From enriched soil sample? | Unknown |
Isolation Temperature | Not entered |
GPS Coordinates | 79.954301 W, 40.446910 N Map |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | May 26, 2015 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Approximate Shotgun Coverage | 3234 |
Genome length (bp) | 45858 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 12 bases |
Overhang Sequence | TCCGGGCCGGTA |
GC Content | 66.1% |
Sequencing Notes | This phage is very similar (only 2 nucleotide differences) to Vendetta. However, the sequencing data for Splinter showed that a portion of the phage population (~20%) had a 1845 bp deletion, a situation not seen in the Vendetta data. The deletion goes from positions 27142 to 28986 (inclusive) in the final sequence file. |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | CU |
Subcluster | CU1 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
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Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Number of Genes | 79 |
Number of tRNAs | 1 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
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Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | KU998238 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
4 |
Pitt Freezer Box Grid# |
E9 |
Available Files |
Final DNAMaster File | Download |