Gordonia phage Trax
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Detailed Information for Phage Trax
Discovery Information
Isolation HostGordonia terrae 3612
Found ByRyan Worthington + Andrew Fournier
Year Found2018
Location Foundorono, ME USA
Finding InstitutionUniversity of Maine, Honors College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates44.80485 N, 68.667548 W Map
Naming NotesFound next to railroad tracks
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 15, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage36
Genome length (bp)75943
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceATCTGCCCCAC
GC Content58.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDU
SubclusterDU2
Cluster Life CycleUnknown
Other Cluster Members
Annotating InstitutionUniversity of Maine, Honors College
Annotation StatusIn GenBank
Number of Genes128
Number of tRNAs7
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Trax_1

Trax_2

Trax_3

Trax_4

Trax_5

Trax_6

Trax_7

Trax_8
(tyrosine integrase)

Trax_9

Trax_10

Trax_11
(terminase small subunit)

Trax_12
(terminase large subunit)

Trax_13
(portal protein)

Trax_14
(MuF-like minor capsid protein)

Trax_15
(scaffolding protein)

Trax_16
(major capsid protein)

Trax_17
(head-to-tail adaptor)

Trax_18
(head-to-tail stopper)

Trax_19

Trax_20
(tail terminator)

Trax_21
(major tail protein)

Trax_22

Trax_23
(tail assembly chaperone)

Trax_24
(tail assembly chaperone)

Trax_25

Trax_26
(tape measure protein)

Trax_27
(minor tail protein)

Trax_28
(minor tail protein)

Trax_29
(minor tail protein)

Trax_30
(minor tail protein)

Trax_31

Trax_32
(minor tail protein)

Trax_33

Trax_34
(lysin A, protease C39 domain)

Trax_35
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

Trax_36

Trax_37

Trax_38
(Lsr2-like DNA bridging protein)

Trax_39

Trax_40
(immunity repressor)

Trax_41
(Cro protein)

Trax_42
(excise)

Trax_43

Trax_44

Trax_45

Trax_46

Trax_47
(phosphoribosyltransferase)

Trax_48

Trax_49

Trax_50

Trax_51

Trax_52

Trax_53

Trax_54
(MazG-like nucleotide pyrophosphohydrolase)

Trax_55

Trax_56

Trax_57
(Cas4 family exonuclease)

Trax_58

Trax_59
(ERF family ssDNA binding protein)

Trax_60

Trax_61
(WhiB family transcription factor)

Trax_62
(WhiB family transcription factor)

Trax_63

Trax_64

Trax_65

Trax_66

Trax_67
(DNA methylase)

Trax_68

Trax_69

Trax_70

Trax_71
(HNH endonuclease)

Trax_72

Trax_73

Trax_74
(DnaB-like dsDNA helicase)

Trax_75
(ssDNA binding protein)

Trax_76

Trax_77

Trax_78
(DNA methylase)

Trax_79
(RusA-like resolvase)

Trax_80

Trax_81
(polynucleotide kinase)

Trax_82

Trax_83
(RNA ligase)

Trax_84
(phosphoribosyl pyrophosphate transferase)

Trax_85

Trax_86
(nicotinate ribosyltransferase)

Trax_87

Trax_88
(nucleotidyltransferase)

Trax_89

Trax_90

Trax_91

Trax_92

Trax_93

Trax_94
(Ro-like RNA binding protein)

Trax_95

Trax_96
(DNA primase/polymerase)

Trax_97 — tRNA
(tRNA-His(gtg))

Trax_98 — tRNA
(tRNA-Tyr(gta))

Trax_99 — tRNA
(tRNA-Gly(tcc))

Trax_100 — tRNA
(tRNA-Lys(ctt))

Trax_101 — tRNA
(tRNA-Leu(caa))

Trax_102

Trax_103

Trax_104

Trax_105 — tRNA
(tRNA-Gln(ctg))

Trax_106 — tRNA
(tRNA-Tyr(gta))

Trax_107

Trax_108
(ThyX-like thymidylate synthase)

Trax_109

Trax_110

Trax_111

Trax_112
(ribonucleotide reductase)

Trax_113
(NrdH-like glutaredoxin)

Trax_114

Trax_115
(MRE11 double-strand break endo/exonuclease)

Trax_116

Trax_117
(lysin B)

Trax_118

Trax_119
(AAA-ATPase)

Trax_120
(NHN endonuclease)

Trax_121
(glycosyltransferase)

Trax_122

Trax_123
(glycosyltransferase)

Trax_124

Trax_125
(glycosyltransferase)

Trax_126
(HNH endonuclease)

Trax_127

Trax_128

Trax_129

Trax_130

Trax_131

Trax_132

Trax_133

Trax_134

Trax_135

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK967378
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 85
Pitt Freezer Box Grid# A8
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload