| Detailed Information for Phage Trine | |
| Discovery Information | |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Kerry Iles |
| Year Found | 2016 |
| Location Found | Pittsburgh, PA USA |
| Finding Institution | University of Pittsburgh |
| Program | Phage Hunters Integrating Research and Education |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 40.4447 N, 79.9522 W Map |
| Discovery Notes | Soil retrieved from the flower bed of the Music Building and Ruskin Hall parking lot |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jun 2, 2016 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 1716 |
| Genome length (bp) | 43758 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | TCCGCCGGTG |
| GC Content | 67.8% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | CD |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members | |
| Annotating Institution | University of Pittsburgh |
| Annotation Status | In GenBank |
| Plaque Notes | Clear and very small-- less than 1 mm in diameter |
| Number of Genes | 66 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewTrine_1 Trine_2 Trine_3 Trine_4 Trine_5 Trine_6 Trine_7 Trine_8 Trine_9 Trine_10 Trine_11 Trine_12 Trine_13 Trine_14 Trine_15 Trine_16 Trine_17 Trine_18 Trine_19 Trine_20 Trine_21 Trine_22 Trine_23 Trine_24 Trine_25 Trine_26 Trine_27 Trine_28 Trine_29 Trine_30 Trine_31 Trine_32 Trine_33 Trine_34 Trine_35 Trine_36 Trine_37 Trine_38 Trine_39 Trine_40 Trine_41 Trine_42 Trine_43 Trine_44 Trine_45 Trine_46 Trine_47 Trine_48 Trine_49 Trine_50 Trine_51 Trine_52 Trine_53 Trine_54 Trine_55 Trine_56 Trine_57 Trine_58 Trine_59 Trine_60 Trine_61 Trine_62 Trine_63 Trine_64 Trine_65 Trine_66 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MH271318 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 5 |
| Pitt Freezer Box Grid# | F8 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |
| Final DNAMaster File | Download |
| GenBank File for Phamerator | Download |