| Detailed Information for Phage Upyo | |
| Discovery Information | |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Patrick Fleming, Hannah Kline |
| Year Found | 2019 |
| Location Found | Orono, ME United States |
| Finding Institution | University of Maine, Honors College |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | Not entered |
| GPS Coordinates | 44.904992 N, 68.664329 W Map |
| Naming Notes | Two lab partners studying in the University of Maine would like to show to the science community, what is "Upyo"? |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 22, 2020 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 155 |
| Genome length (bp) | 45732 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 11 bases |
| Overhang Sequence | TTCCGCCGGTA |
| GC Content | 67.9% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | CD |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members | |
| Annotating Institution | University of Maine, Honors College |
| Annotation Status | In GenBank |
| Number of Genes | 70 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewUpyo_1 Upyo_2 Upyo_3 Upyo_4 Upyo_5 Upyo_6 Upyo_7 Upyo_8 Upyo_9 Upyo_10 Upyo_11 Upyo_12 Upyo_13 Upyo_14 Upyo_15 Upyo_16 Upyo_17 Upyo_18 Upyo_19 Upyo_20 Upyo_21 Upyo_22 Upyo_23 Upyo_24 Upyo_25 Upyo_26 Upyo_27 Upyo_28 Upyo_29 Upyo_30 Upyo_31 Upyo_32 Upyo_33 Upyo_34 Upyo_35 Upyo_36 Upyo_37 Upyo_38 Upyo_39 Upyo_40 Upyo_41 Upyo_42 Upyo_43 Upyo_44 Upyo_45 Upyo_46 Upyo_47 Upyo_48 Upyo_49 Upyo_50 Upyo_51 Upyo_52 Upyo_53 Upyo_54 Upyo_55 Upyo_56 Upyo_57 Upyo_58 Upyo_59 Upyo_60 Upyo_61 Upyo_62 Upyo_63 Upyo_64 Upyo_65 Upyo_66 Upyo_67 Upyo_68 Upyo_69 Upyo_70 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MT521997 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 109 |
| Pitt Freezer Box Grid# | G10 |
| Available Files | |
| EM Picture | Download |
| GenBank File for Phamerator | Download |